MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP083610 Location: 2579796..2611676 Organism: Escherichia coli strain EC2648-Vir1 Replicon: chromosome
Accession: NZ_CP083610 Location: 2579796..2611676 Organism: Escherichia coli strain EC2648-Vir1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ48_RS12420 (2575980) | 2575980..2577248 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| LAJ48_RS12425 (2577268) | 2577268..2578245 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| LAJ48_RS12430 (2578581) | 2578581..2580833 | - | 2253 | Protein_2426 | alpha-amylase family glycosyl hydrolase | - |
| LAJ48_RS12440 (2582219) | 2582219..2583592 | + | 1374 | Protein_2427 | DUF5507 domain-containing protein | - |
| LAJ48_RS23860 (2583986) | 2583986..2584165 | + | 180 | WP_087676347.1 | DNA invertase | - |
| LAJ48_RS12450 (2584320) | 2584320..2584439 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| LAJ48_RS12455 (2584504) | 2584504..2589084 | + | 4581 | WP_010723187.1 | adhesin-like autotransporter YpjA/EhaD | - |
| LAJ48_RS12460 (2589448) | 2589448..2589777 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| LAJ48_RS12465 (2589798) | 2589798..2590115 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| LAJ48_RS12470 (2590153) | 2590153..2590353 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| LAJ48_RS12475 (2590362) | 2590362..2590844 | - | 483 | WP_001407480.1 | RadC family protein | - |
| LAJ48_RS12480 (2590853) | 2590853..2591311 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| LAJ48_RS12485 (2591414) | 2591414..2591598 | - | 185 | Protein_2436 | DUF905 family protein | - |
| LAJ48_RS12490 (2592209) | 2592209..2593912 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| LAJ48_RS12495 (2594054) | 2594054..2595063 | + | 1010 | Protein_2438 | arsenic transporter | - |
| LAJ48_RS12500 (2595076) | 2595076..2595228 | + | 153 | Protein_2439 | arsenate reductase | - |
| LAJ48_RS12505 (2595615) | 2595615..2596082 | - | 468 | WP_000702495.1 | protein YfjT | - |
| LAJ48_RS12510 (2596106) | 2596106..2596549 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| LAJ48_RS12515 (2596549) | 2596549..2596785 | - | 237 | WP_001144029.1 | protein YpjK | - |
| LAJ48_RS12520 (2596826) | 2596826..2597527 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| LAJ48_RS12525 (2597744) | 2597744..2598565 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| LAJ48_RS12530 (2598657) | 2598657..2599520 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| LAJ48_RS12535 (2599875) | 2599875..2600246 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| LAJ48_RS12540 (2600239) | 2600239..2601312 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| LAJ48_RS12545 (2601454) | 2601454..2601717 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| LAJ48_RS12550 (2602077) | 2602077..2603693 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| LAJ48_RS12555 (2603690) | 2603690..2605879 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| LAJ48_RS12560 (2606057) | 2606057..2606683 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| LAJ48_RS12565 (2606836) | 2606836..2608245 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| LAJ48_RS12570 (2608374) | 2608374..2608586 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| LAJ48_RS12575 (2608630) | 2608630..2609586 | + | 957 | WP_000510827.1 | protein YfjH | - |
| LAJ48_RS12580 (2609830) | 2609830..2611071 | - | 1242 | WP_000101723.1 | integrase | - |
| LAJ48_RS12590 (2611852) | 2611852..2612334 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| LAJ48_RS12595 (2612505) | 2612505..2612942 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| LAJ48_RS12600 (2612932) | 2612932..2613222 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| LAJ48_RS12605 (2613284) | 2613284..2613625 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| LAJ48_RS12610 (2613774) | 2613774..2615435 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| LAJ48_RS12615 (2615521) | 2615521..2616399 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |