MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP083410 Location: 1411998..1433672 Organism: Escherichia coli strain RP437 Replicon: chromosome
Accession: NZ_CP083410 Location: 1411998..1433672 Organism: Escherichia coli strain RP437 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ62_RS06940 (1407987) | 1407987..1408034 | + | 48 | WP_211180494.1 | protein YnaN | - |
| LAJ62_RS06945 (1408048) | 1408048..1409031 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| LAJ62_RS06950 (1409509) | 1409509..1410882 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| LAJ62_RS06955 (1411011) | 1411011..1411946 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LAJ62_RS06960 (1411998) | 1411998..1413233 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LAJ62_RS06965 (1413235) | 1413235..1413450 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1413554) | 1413554..1413732 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1413554) | 1413554..1413732 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1413554) | 1413554..1413732 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1413554) | 1413554..1413732 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| LAJ62_RS06970 (1413529) | 1413529..1413738 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| LAJ62_RS06975 (1413731) | 1413731..1413925 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| LAJ62_RS06980 (1413982) | 1413982..1414791 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| LAJ62_RS06985 (1414784) | 1414784..1417384 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| LAJ62_RS06990 (1417486) | 1417486..1417761 | - | 276 | WP_000632297.1 | protein RacC | - |
| LAJ62_RS06995 (1417836) | 1417836..1418006 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| LAJ62_RS07000 (1418006) | 1418006..1418227 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| LAJ62_RS07005 (1418669) | 1418669..1419157 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| LAJ62_RS07010 (1419154) | 1419154..1419309 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| LAJ62_RS22515 (1419320) | 1419320..1419454 | - | 135 | WP_000233809.1 | phage protein | - |
| LAJ62_RS07015 (1419763) | 1419763..1420239 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| LAJ62_RS07020 (1420363) | 1420363..1420659 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| LAJ62_RS07025 (1420682) | 1420682..1421104 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| LAJ62_RS07030 (1421117) | 1421117..1421974 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| LAJ62_RS07035 (1421981) | 1421981..1422727 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| LAJ62_RS07040 (1422750) | 1422750..1423202 | + | 453 | Protein_1372 | DUF1627 domain-containing protein | - |
| LAJ62_RS22520 (1423398) | 1423398..1423583 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| LAJ62_RS07050 (1423780) | 1423780..1425237 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| LAJ62_RS07055 (1425375) | 1425375..1425638 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| LAJ62_RS07060 (1425619) | 1425619..1425978 | + | 360 | WP_000091628.1 | protein YdaY | - |
| LAJ62_RS07065 (1426452) | 1426452..1427384 | + | 933 | Protein_1377 | phage tail length tape measure family protein | - |
| LAJ62_RS07070 (1427387) | 1427387..1427602 | + | 216 | Protein_1378 | Ail/Lom family outer membrane beta-barrel protein | - |
| LAJ62_RS07075 (1427744) | 1427744..1428724 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| LAJ62_RS07080 (1428794) | 1428794..1428982 | + | 189 | Protein_1380 | Ail/Lom family outer membrane beta-barrel protein | - |
| LAJ62_RS07085 (1429047) | 1429047..1432409 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LAJ62_RS07090 (1432409) | 1432409..1432984 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| LAJ62_RS07095 (1433082) | 1433082..1433672 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LAJ62_RS07100 (1433989) | 1433989..1434222 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| LAJ62_RS07105 (1434291) | 1434291..1434404 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LAJ62_RS07110 (1435183) | 1435183..1435617 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| LAJ62_RS07115 (1435758) | 1435758..1436891 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |