MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 107702 bp
Accession: NZ_CP081007 Location: 4057288..4164989 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Accession: NZ_CP081007 Location: 4057288..4164989 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3826_RS19390 (4052859) | 4052859..4053050 | + | 192 | Protein_3805 | DeoR family transcriptional regulator | - |
| K3826_RS19395 (4053097) | 4053097..4053273 | + | 177 | WP_001285112.1 | hypothetical protein | - |
| K3826_RS19400 (4053273) | 4053273..4053716 | + | 444 | WP_000824223.1 | lipoprotein YafY | - |
| K3826_RS19405 (4053739) | 4053739..4054206 | + | 468 | WP_001547765.1 | protein YkfB | - |
| K3826_RS19410 (4054283) | 4054283..4054522 | + | 240 | WP_000194654.1 | DUF905 family protein | - |
| K3826_RS19415 (4054620) | 4054620..4055078 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| K3826_RS19420 (4055094) | 4055094..4055570 | + | 477 | WP_000811693.1 | RadC family protein | - |
| K3826_RS19425 (4055579) | 4055579..4055800 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| K3826_RS19430 (4055819) | 4055819..4056136 | + | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | - |
| K3826_RS19435 (4056157) | 4056157..4056498 | + | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | - |
| K3826_RS19445 (4057070) | 4057070..4058323 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| K3826_RS19450 (4058335) | 4058335..4059438 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| K3826_RS19455 (4059726) | 4059726..4060781 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| K3826_RS19460 (4060820) | 4060820..4061221 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| - (4061939) | 4061939..4062019 | - | 81 | NuclAT_13 | - | - |
| - (4061939) | 4061939..4062019 | - | 81 | NuclAT_13 | - | - |
| - (4061939) | 4061939..4062019 | - | 81 | NuclAT_13 | - | - |
| - (4061939) | 4061939..4062019 | - | 81 | NuclAT_13 | - | - |
| K3826_RS19465 (4061279) | 4061279..4062523 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| K3826_RS19470 (4062615) | 4062615..4063073 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| K3826_RS19475 (4063334) | 4063334..4064791 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| K3826_RS19480 (4064848) | 4064848..4065369 | - | 522 | Protein_3822 | peptide chain release factor H | - |
| K3826_RS19485 (4065365) | 4065365..4065571 | - | 207 | Protein_3823 | RtcB family protein | - |
| K3826_RS19490 (4065889) | 4065889..4066341 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| K3826_RS19495 (4066351) | 4066351..4066749 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| K3826_RS19500 (4066752) | 4066752..4067045 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| K3826_RS19505 (4067097) | 4067097..4068152 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| K3826_RS19510 (4068223) | 4068223..4069008 | - | 786 | WP_000207552.1 | Thiazole synthase | VF |
| K3826_RS19515 (4068980) | 4068980..4070692 | + | 1713 | Protein_3829 | Sulfur carrier protein ThiS | VF |
| K3826_RS19520 (4070916) | 4070916..4071413 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| K3826_RS19525 (4071589) | 4071589..4072338 | - | 750 | WP_000056849.1 | Thiamine-phosphate synthase | VF |
| K3826_RS19530 (4072548) | 4072548..4072808 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| K3826_RS19535 (4072811) | 4072811..4073089 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| K3826_RS19540 (4073245) | 4073245..4073985 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| K3826_RS19545 (4073956) | 4073956..4074723 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| K3826_RS19550 (4074998) | 4074998..4075537 | - | 540 | WP_001096705.1 | DUF2058 domain-containing protein | - |
| K3826_RS19555 (4075639) | 4075639..4076850 | - | 1212 | WP_000107627.1 | 3-(3-hydroxy-phenyl)propionate transporter | - |
| K3826_RS19560 (4077327) | 4077327..4078340 | - | 1014 | WP_001013499.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| K3826_RS19565 (4078337) | 4078337..4079287 | - | 951 | WP_000044314.1 | acetaldehyde dehydrogenase | - |
| K3826_RS19570 (4079284) | 4079284..4080093 | - | 810 | WP_000160710.1 | 2-keto-4-pentenoate hydratase | - |
| K3826_RS19575 (4080103) | 4080103..4080969 | - | 867 | WP_000121907.1 | 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase | - |
| K3826_RS19580 (4080987) | 4080987..4081931 | - | 945 | WP_000543457.1 | 3-carboxyethylcatechol 2,3-dioxygenase | - |
| K3826_RS19585 (4081933) | 4081933..4083597 | - | 1665 | WP_001007407.1 | bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | - |
| K3826_RS19590 (4083788) | 4083788..4084621 | + | 834 | WP_001301325.1 | DNA-binding transcriptional regulator | - |
| K3826_RS19595 (4084698) | 4084698..4085780 | + | 1083 | WP_000805902.1 | DNA-binding transcriptional repressor LacI | - |
| K3826_RS19600 (4085996) | 4085996..4086388 | - | 393 | Protein_3846 | fertility inhibition protein FinO | - |
| K3826_RS19605 (4086443) | 4086443..4087189 | - | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| K3826_RS19610 (4087209) | 4087209..4092479 | - | 5271 | WP_000987005.1 | conjugative transfer relaxase/helicase TraI | - |
| K3826_RS19615 (4092561) | 4092561..4092788 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K3826_RS19620 (4092788) | 4092788..4093186 | + | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| K3826_RS19625 (4093195) | 4093195..4095348 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| K3826_RS19630 (4095601) | 4095601..4096332 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| K3826_RS19635 (4096357) | 4096357..4096878 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| K3826_RS19640 (4096911) | 4096911..4099727 | - | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| K3826_RS19645 (4099724) | 4099724..4101097 | - | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| K3826_RS19650 (4101097) | 4101097..4101477 | - | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| K3826_RS19655 (4101464) | 4101464..4101805 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| K3826_RS19660 (4101735) | 4101735..4102280 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| K3826_RS19665 (4102267) | 4102267..4102551 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| K3826_RS19670 (4102632) | 4102632..4102946 | + | 315 | WP_000415566.1 | protein ArtA | - |
| K3826_RS19675 (4102948) | 4102948..4103295 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| K3826_RS19680 (4103311) | 4103311..4104054 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| K3826_RS19685 (4104047) | 4104047..4104304 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| K3826_RS19690 (4104331) | 4104331..4106139 | - | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| K3826_RS19695 (4106136) | 4106136..4106774 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| K3826_RS19700 (4106783) | 4106783..4107775 | - | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| K3826_RS19705 (4107772) | 4107772..4108404 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| K3826_RS19710 (4108401) | 4108401..4108787 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| K3826_RS19715 (4108784) | 4108784..4111411 | - | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| K3826_RS19720 (4111571) | 4111571..4111792 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| K3826_RS19725 (4111927) | 4111927..4112442 | - | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K3826_RS19730 (4112439) | 4112439..4112690 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| K3826_RS19735 (4112702) | 4112702..4112899 | - | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| K3826_RS19740 (4112886) | 4112886..4113476 | - | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| K3826_RS19745 (4113466) | 4113466..4114893 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| K3826_RS19750 (4114893) | 4114893..4115621 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| K3826_RS19755 (4115608) | 4115608..4116174 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| K3826_RS19760 (4116196) | 4116196..4116507 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| K3826_RS19765 (4116522) | 4116522..4116887 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| K3826_RS19770 (4116920) | 4116920..4117321 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| K3826_RS19775 (4117414) | 4117414..4118103 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| K3826_RS19780 (4118290) | 4118290..4118673 | - | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| K3826_RS19785 (4119006) | 4119006..4119596 | + | 591 | WP_170919186.1 | hypothetical protein | VF |
| K3826_RS19790 (4119892) | 4119892..4120713 | - | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| K3826_RS19795 (4120832) | 4120832..4121119 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| K3826_RS19800 (4121144) | 4121144..4121350 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| K3826_RS22835 (4121420) | 4121420..4121503 | + | 84 | Protein_3887 | hypothetical protein | - |
| K3826_RS19805 (4121766) | 4121766..4121921 | + | 156 | WP_001307436.1 | protein YrhD | - |
| K3826_RS19810 (4122121) | 4122121..4122405 | + | 285 | WP_000634159.1 | YrhB family protein | - |
| K3826_RS19815 (4122443) | 4122443..4124185 | - | 1743 | WP_000595085.1 | Phage shock protein G | VF |
| K3826_RS19820 (4124305) | 4124305..4124745 | + | 441 | WP_000825996.1 | DUF2756 family protein | - |
| K3826_RS19825 (4124732) | 4124732..4125475 | - | 744 | WP_000073622.1 | glycerophosphodiester phosphodiesterase | - |
| K3826_RS19830 (4125472) | 4125472..4126542 | - | 1071 | WP_000907807.1 | Alanine racemase, biosynthetic | VF |
| K3826_RS19835 (4126544) | 4126544..4127389 | - | 846 | WP_000572177.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| K3826_RS19840 (4127386) | 4127386..4128273 | - | 888 | WP_000099286.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| K3826_RS19845 (4128371) | 4128371..4129687 | - | 1317 | WP_000803190.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| K3826_RS19850 (4130086) | 4130086..4130799 | - | 714 | WP_000416891.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| K3826_RS19855 (4130801) | 4130801..4131568 | - | 768 | WP_000082101.1 | putative protein YjbR | VF |
| K3826_RS19860 (4131565) | 4131565..4132842 | - | 1278 | WP_000803813.1 | branched chain amino acid ABC transporter permease LivM | - |
| K3826_RS19865 (4132839) | 4132839..4133765 | - | 927 | WP_001295111.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| K3826_RS19870 (4133813) | 4133813..4134922 | - | 1110 | WP_000827696.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| K3826_RS19875 (4135346) | 4135346..4135729 | + | 384 | WP_000778768.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| K3826_RS19880 (4135917) | 4135917..4137020 | - | 1104 | WP_001021996.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| K3826_RS19885 (4137291) | 4137291..4138145 | - | 855 | WP_000130217.1 | RNA polymerase sigma factor RpoH | - |
| K3826_RS19890 (4138390) | 4138390..4139448 | - | 1059 | WP_001042003.1 | permease-like cell division protein FtsX | - |
| K3826_RS19895 (4139441) | 4139441..4140109 | - | 669 | WP_000617723.1 | Sodium, potassium, lithium and rubidium/H(+) antiporter | VF |
| K3826_RS19900 (4140112) | 4140112..4141605 | - | 1494 | WP_001040654.1 | hypothetical protein | VF |
| K3826_RS19905 (4141755) | 4141755..4142351 | + | 597 | WP_000743193.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase | - |
| K3826_RS19910 (4142341) | 4142341..4142610 | + | 270 | WP_001311191.1 | DUF1145 family protein | - |
| K3826_RS19915 (4142613) | 4142613..4142972 | - | 360 | WP_000042895.1 | DUF2500 domain-containing protein | - |
| K3826_RS19920 (4143113) | 4143113..4143739 | + | 627 | WP_000964718.1 | lysoplasmalogenase | - |
| K3826_RS19925 (4143813) | 4143813..4146011 | + | 2199 | WP_000106551.1 | Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA | - |
| K3826_RS19930 (4146113) | 4146113..4146358 | - | 246 | WP_000130621.1 | sulfurtransferase TusA | - |
| K3826_RS19935 (4146579) | 4146579..4147244 | + | 666 | WP_001100469.1 | 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | - |
| K3826_RS19940 (4147317) | 4147317..4147874 | + | 558 | WP_001245295.1 | phage sensitivity protein DcrB | - |
| K3826_RS19945 (4147878) | 4147878..4149095 | - | 1218 | WP_001300943.1 | MFS transporter | - |
| K3826_RS19950 (4149227) | 4149227..4150276 | + | 1050 | WP_001300885.1 | AI-2E family transporter | - |
| K3826_RS19955 (4150331) | 4150331..4150918 | + | 588 | WP_000285774.1 | Formate-dependent nitrite reductase complex subunit NrfG | VF |
| K3826_RS19960 (4151029) | 4151029..4152603 | + | 1575 | WP_000953361.1 | nickel ABC transporter substrate-binding protein | - |
| K3826_RS19965 (4152603) | 4152603..4153547 | + | 945 | WP_000947068.1 | nickel ABC transporter permease subunit NikB | - |
| K3826_RS19970 (4153544) | 4153544..4154377 | + | 834 | WP_001008963.1 | nickel ABC transporter permease subunit NikC | - |
| K3826_RS19975 (4154377) | 4154377..4155141 | + | 765 | WP_001136229.1 | nickel import ATP-binding protein NikD | - |
| K3826_RS19980 (4155138) | 4155138..4155944 | + | 807 | WP_000173631.1 | Cation efflux system protein CusC | VF |
| K3826_RS19985 (4155950) | 4155950..4156351 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| K3826_RS19990 (4156819) | 4156819..4157079 | - | 261 | Protein_3925 | transposase | - |
| K3826_RS19995 (4157146) | 4157146..4157930 | + | 785 | Protein_3926 | IS3 family transposase ISEc52 | Transposase |
| K3826_RS20000 (4158013) | 4158013..4158270 | + | 258 | WP_000177057.1 | hypothetical protein | - |
| K3826_RS20005 (4158827) | 4158827..4159594 | - | 768 | WP_000175457.1 | D-allulose-6-phosphate 3-epimerase | VF |
| K3826_RS20010 (4159595) | 4159595..4160551 | - | 957 | WP_000684852.1 | D-allose transport system permease protein AlsC | VF |
| K3826_RS20015 (4160548) | 4160548..4161546 | - | 999 | WP_000125187.1 | Ribose import ATP-binding protein RbsA | VF |
| K3826_RS20020 (4161543) | 4161543..4162445 | - | 903 | WP_000879155.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| K3826_RS20025 (4162490) | 4162490..4164814 | - | 2325 | WP_000188283.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| K3826_RS20030 (4164901) | 4164901..4165854 | - | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| K3826_RS20035 (4165851) | 4165851..4166372 | - | 522 | WP_001283626.1 | RNA polymerase sigma factor FecI | - |
| K3826_RS20040 (4166509) | 4166509..4166577 | + | 69 | WP_211180522.1 | protein YkiE | - |
| K3826_RS20045 (4166664) | 4166664..4167361 | + | 698 | Protein_3936 | IS1-like element IS1F family transposase | - |
| K3826_RS20050 (4167475) | 4167475..4168461 | - | 987 | WP_000373366.1 | sugar-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|