MGE detailed information
MGE type: Genomic_island MGE length: 20176 bp
Accession: NZ_CP080620 Location: 4267651..4287826 Organism: Escherichia coli strain TOP10 Replicon: chromosome
Accession: NZ_CP080620 Location: 4267651..4287826 Organism: Escherichia coli strain TOP10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3F56_RS20435 (4262791) | 4262791..4263594 | + | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| K3F56_RS20440 (4263591) | 4263591..4264505 | - | 915 | WP_000648572.1 | DNA-binding transcriptional regulator YafC | - |
| K3F56_RS20445 (4264746) | 4264746..4265546 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| K3F56_RS20450 (4265577) | 4265577..4266173 | + | 597 | Protein_4025 | methyltransferase domain-containing protein | - |
| K3F56_RS20455 (4266221) | 4266221..4267579 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| K3F56_RS20460 (4267651) | 4267651..4268406 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| K3F56_RS20465 (4268440) | 4268440..4269162 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| K3F56_RS20470 (4269159) | 4269159..4269626 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| K3F56_RS20475 (4269691) | 4269691..4270422 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| K3F56_RS20485 (4270959) | 4270959..4271744 | + | 786 | WP_001086141.1 | lipoprotein | - |
| K3F56_RS20490 (4271881) | 4271881..4272360 | - | 480 | WP_001236645.1 | protein YkfM | - |
| K3F56_RS20495 (4272370) | 4272370..4272726 | - | 357 | Protein_4033 | hypothetical protein | - |
| K3F56_RS20500 (4272724) | 4272724..4273002 | + | 279 | Protein_4034 | ISAs1 family transposase | - |
| K3F56_RS20505 (4273043) | 4273043..4273813 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| K3F56_RS20510 (4273994) | 4273994..4274440 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| K3F56_RS20515 (4274483) | 4274483..4276927 | - | 2445 | WP_000973083.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| K3F56_RS20520 (4277167) | 4277167..4277745 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| K3F56_RS20525 (4277951) | 4277951..4278718 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| K3F56_RS20530 (4278689) | 4278689..4279429 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| K3F56_RS20535 (4279585) | 4279585..4279863 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| K3F56_RS20540 (4279866) | 4279866..4280126 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| K3F56_RS20545 (4280336) | 4280336..4281085 | + | 750 | WP_000056849.1 | hypothetical protein | VF |
| K3F56_RS20550 (4281261) | 4281261..4281758 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| K3F56_RS20555 (4281982) | 4281982..4283694 | - | 1713 | Protein_4045 | hypothetical protein | VF |
| K3F56_RS20560 (4283666) | 4283666..4284451 | + | 786 | WP_000207552.1 | hypothetical protein | VF |
| K3F56_RS20565 (4284522) | 4284522..4285577 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| K3F56_RS20570 (4285629) | 4285629..4285922 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| K3F56_RS20575 (4285925) | 4285925..4286323 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| K3F56_RS20580 (4286333) | 4286333..4286785 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| K3F56_RS20585 (4287103) | 4287103..4287309 | + | 207 | Protein_4051 | RtcB family protein | - |
| K3F56_RS20590 (4287305) | 4287305..4287826 | + | 522 | Protein_4052 | peptide chain release factor H | - |
| K3F56_RS20595 (4287883) | 4287883..4289340 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| K3F56_RS20600 (4289601) | 4289601..4290059 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (4290655) | 4290655..4290735 | + | 81 | NuclAT_12 | - | - |
| - (4290655) | 4290655..4290735 | + | 81 | NuclAT_12 | - | - |
| - (4290655) | 4290655..4290735 | + | 81 | NuclAT_12 | - | - |
| - (4290655) | 4290655..4290735 | + | 81 | NuclAT_12 | - | - |
| K3F56_RS20605 (4290151) | 4290151..4291395 | + | 1245 | WP_000189532.1 | esterase FrsA | - |
| K3F56_RS20610 (4291453) | 4291453..4291755 | + | 303 | Protein_4056 | sigma factor-binding protein Crl | - |
| K3F56_RS20615 (4291768) | 4291768..4291893 | - | 126 | Protein_4057 | IS4 family transposase | - |
| K3F56_RS20620 (4291964) | 4291964..4292116 | - | 153 | WP_000956455.1 | type I toxin-antitoxin system toxin HokE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA28996, TA28997 | NC_020518 | 223678..243064 | 0.001 |