MGE detailed information
MGE type: Mobilizable plasmid MGE length: 61228 bp
Accession: NZ_CP079893 Location: 1..61228 Organism: Escherichia fergusonii strain 5zf15-2-1 Replicon: plasmid p5ZF15-2-1
Accession: NZ_CP079893 Location: 1..61228 Organism: Escherichia fergusonii strain 5zf15-2-1 Replicon: plasmid p5ZF15-2-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYD87_RS24900 (KYD87_24775) | 1..1029 | + | 1029 | WP_001175213.1 | plasmid replication initiator RepA | - |
| KYD87_RS24905 | 1730..1920 | + | 191 | Protein_1 | hypothetical protein | - |
| KYD87_RS24910 | 2570..2722 | + | 153 | Protein_2 | FlmC family protein | - |
| KYD87_RS24915 (KYD87_24780) | 2670..2789 | + | 120 | WP_241215590.1 | Hok/Gef family protein | - |
| KYD87_RS24920 (KYD87_24785) | 2939..3535 | + | 597 | WP_000125165.1 | ProQ/FINO family protein | - |
| KYD87_RS24925 (KYD87_24790) | 3553..3837 | - | 285 | WP_001162371.1 | hypothetical protein | - |
| KYD87_RS24930 (KYD87_24795) | 3911..4576 | - | 666 | WP_000532148.1 | division plane positioning ATPase MipZ | - |
| KYD87_RS24935 (KYD87_24800) | 5165..5494 | + | 330 | WP_000855119.1 | hypothetical protein | - |
| KYD87_RS24940 (KYD87_24805) | 5898..6413 | + | 516 | WP_001025393.1 | J domain-containing protein | - |
| KYD87_RS24945 (KYD87_24810) | 6517..7059 | + | 543 | WP_001083904.1 | hypothetical protein | - |
| KYD87_RS24950 (KYD87_24815) | 7056..7310 | + | 255 | WP_001230709.1 | hypothetical protein | Toxin Detail |
| KYD87_RS24955 (KYD87_24820) | 7307..7549 | + | 243 | WP_000151456.1 | hypothetical protein | Antitoxin Detail |
| KYD87_RS24960 (KYD87_24825) | 7770..7988 | + | 219 | WP_154101533.1 | hypothetical protein | - |
| KYD87_RS24965 (KYD87_24830) | 8120..8413 | + | 294 | WP_000673428.1 | hypothetical protein | - |
| KYD87_RS24970 (KYD87_24835) | 8907..9155 | + | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| KYD87_RS24975 (KYD87_24840) | 9152..9499 | + | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| KYD87_RS24980 | 9587..10030 | - | 444 | WP_023223351.1 | hypothetical protein | - |
| KYD87_RS24985 (KYD87_24850) | 10271..10570 | + | 300 | WP_034169410.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| KYD87_RS24990 (KYD87_24855) | 10830..11156 | - | 327 | WP_000206697.1 | hypothetical protein | - |
| KYD87_RS24995 (KYD87_24860) | 11158..11481 | - | 324 | WP_223666488.1 | hypothetical protein | - |
| KYD87_RS25000 | 11458..11598 | - | 141 | Protein_20 | hypothetical protein | - |
| KYD87_RS25005 (KYD87_24865) | 11618..12325 | - | 708 | WP_000108794.1 | hypothetical protein | - |
| KYD87_RS25010 (KYD87_24870) | 12327..13079 | - | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
| KYD87_RS25015 (KYD87_24875) | 13097..13498 | - | 402 | WP_021575837.1 | hypothetical protein | - |
| KYD87_RS25020 (KYD87_24880) | 13867..14208 | + | 342 | WP_000730722.1 | hypothetical protein | Relaxase |
| KYD87_RS25025 (KYD87_24885) | 14205..18518 | + | 4314 | WP_034169409.1 | hypothetical protein | - |
| KYD87_RS25030 (KYD87_24890) | 18739..20364 | + | 1626 | WP_049589868.1 | putative phosphatidylethanolamine transferase Mcr-1 | VF |
| KYD87_RS25035 (KYD87_24895) | 20436..21182 | + | 747 | WP_063101822.1 | PAP2 family protein | - |
| KYD87_RS25040 (KYD87_24900) | 21163..21603 | - | 441 | WP_000666084.1 | hypothetical protein | - |
| KYD87_RS25045 (KYD87_24905) | 21949..22155 | - | 207 | WP_000850854.1 | hemolysin expression modulator Hha | - |
| KYD87_RS25050 (KYD87_24910) | 22224..24389 | - | 2166 | WP_063078686.1 | type IA DNA topoisomerase | - |
| KYD87_RS25055 (KYD87_24915) | 24394..24969 | - | 576 | WP_001303470.1 | hypothetical protein | - |
| KYD87_RS25060 (KYD87_24920) | 25139..26815 | - | 1677 | WP_000289347.1 | PcfJ domain-containing protein | - |
| KYD87_RS25065 (KYD87_24925) | 26910..27442 | - | 533 | Protein_33 | thermonuclease family protein | - |
| KYD87_RS25070 (KYD87_24930) | 27472..28125 | - | 654 | WP_170855322.1 | hypothetical protein | - |
| KYD87_RS25075 (KYD87_24935) | 28137..29261 | - | 1125 | WP_000486716.1 | site-specific integrase | - |
| KYD87_RS25080 (KYD87_24940) | 30175..31419 | - | 1245 | WP_000750517.1 | hypothetical protein | VF |
| KYD87_RS25085 (KYD87_24945) | 31432..32067 | - | 636 | WP_000934977.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| KYD87_RS25090 (KYD87_24950) | 32071..32553 | - | 483 | WP_001258095.1 | hypothetical protein | VF |
| KYD87_RS25095 (KYD87_24955) | 32619..33176 | - | 558 | WP_000095048.1 | type 4 pilus major pilin | - |
| KYD87_RS25100 (KYD87_24960) | 33221..34330 | - | 1110 | WP_000974903.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| KYD87_RS25105 (KYD87_24965) | 34321..35859 | - | 1539 | WP_000466225.1 | Type II secretion system protein E | VF |
| KYD87_RS25110 (KYD87_24970) | 35884..36378 | - | 495 | WP_000912553.1 | hypothetical protein | VF |
| KYD87_RS25115 (KYD87_24975) | 36362..37672 | - | 1311 | WP_001454111.1 | type 4b pilus protein PilO2 | - |
| KYD87_RS25120 (KYD87_24980) | 37723..39366 | - | 1644 | WP_001035592.1 | Outer membrane lipoprotein BfpB | VF |
| KYD87_RS25125 (KYD87_24985) | 39359..39901 | - | 543 | WP_001220544.1 | sigma 54-interacting transcriptional regulator | - |
| KYD87_RS25130 (KYD87_24990) | 39948..41906 | - | 1959 | WP_015059539.1 | type IV secretory system conjugative DNA transfer family protein | - |
| KYD87_RS25135 (KYD87_24995) | 41922..42977 | - | 1056 | WP_001059977.1 | Type IV secretion system protein VirB11 | VF |
| KYD87_RS25140 (KYD87_25000) | 42996..44135 | - | 1140 | WP_171264649.1 | Type IV secretion system protein virB10 | VF |
| KYD87_RS25145 (KYD87_25005) | 44125..44895 | - | 771 | WP_000979242.1 | Type IV secretion system protein PtlF | VF |
| KYD87_RS25150 (KYD87_25010) | 44892..45626 | - | 735 | WP_000432282.1 | Type IV secretion system protein virB8 | VF |
| KYD87_RS25155 (KYD87_25015) | 45792..48149 | - | 2358 | WP_000548955.1 | VirB4 family type IV secretion system protein | - |
| KYD87_RS25160 (KYD87_25020) | 48155..48475 | - | 321 | WP_000362080.1 | VirB3 family type IV secretion system protein | - |
| KYD87_RS25165 | 48546..48836 | - | 291 | WP_000865479.1 | conjugal transfer protein | - |
| KYD87_RS25170 (KYD87_25030) | 48836..49420 | - | 585 | WP_001177113.1 | Type IV secretion system protein virB1 | VF |
| KYD87_RS25175 (KYD87_25035) | 49441..49839 | - | 399 | WP_001153665.1 | hypothetical protein | - |
| KYD87_RS25180 (KYD87_25040) | 49958..50395 | - | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
| KYD87_RS25185 (KYD87_25045) | 50401..51636 | - | 1236 | WP_015059538.1 | hypothetical protein | VF |
| KYD87_RS25190 (KYD87_25050) | 51639..51938 | - | 300 | WP_000835764.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| KYD87_RS25195 (KYD87_25055) | 52006..52287 | - | 282 | WP_000638823.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| KYD87_RS25200 (KYD87_25060) | 52277..52528 | - | 252 | WP_000121741.1 | hypothetical protein | Antitoxin Detail |
| KYD87_RS25205 (KYD87_25065) | 52628..53263 | - | 636 | WP_015059536.1 | hypothetical protein | - |
| KYD87_RS25210 (KYD87_25070) | 53311..54102 | + | 792 | WP_023154636.1 | DUF5710 domain-containing protein | - |
| KYD87_RS25215 (KYD87_25075) | 54357..54581 | - | 225 | WP_000713561.1 | EexN family lipoprotein | - |
| KYD87_RS25220 (KYD87_25080) | 54590..55234 | - | 645 | WP_001310442.1 | hypothetical protein | VF |
| KYD87_RS25225 (KYD87_25085) | 55240..56235 | - | 996 | WP_001028541.1 | hypothetical protein | VF |
| KYD87_RS25230 (KYD87_25090) | 56239..56496 | - | 258 | WP_000739144.1 | hypothetical protein | - |
| KYD87_RS25235 (KYD87_25095) | 56493..56795 | - | 303 | WP_001360345.1 | hypothetical protein | - |
| KYD87_RS25240 (KYD87_25100) | 57066..57278 | - | 213 | WP_039022940.1 | hypothetical protein | - |
| KYD87_RS25245 (KYD87_25105) | 57289..57459 | - | 171 | WP_000550720.1 | hypothetical protein | - |
| KYD87_RS25250 (KYD87_25110) | 57463..57906 | - | 444 | WP_072037179.1 | NfeD family protein | - |
| KYD87_RS25255 (KYD87_25115) | 58280..59233 | - | 954 | WP_072109880.1 | SPFH domain-containing protein | - |
| KYD87_RS25260 (KYD87_25120) | 59260..59436 | - | 177 | WP_000753050.1 | hypothetical protein | - |
| KYD87_RS25265 (KYD87_25125) | 59429..59644 | - | 216 | WP_001127357.1 | DUF1187 family protein | - |
| KYD87_RS25270 (KYD87_25130) | 59637..60089 | - | 453 | WP_223666486.1 | CaiF/GrlA family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|