MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP077969 Location: 1329478..1351152 Organism: Escherichia coli strain JM83 Replicon: chromosome
Accession: NZ_CP077969 Location: 1329478..1351152 Organism: Escherichia coli strain JM83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTJ86_RS06490 (1325467) | 1325467..1325514 | + | 48 | WP_211180494.1 | protein YnaN | - |
| KTJ86_RS06495 (1325528) | 1325528..1326511 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| KTJ86_RS06500 (1326989) | 1326989..1328362 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| KTJ86_RS06505 (1328491) | 1328491..1329426 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| KTJ86_RS06510 (1329478) | 1329478..1330713 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| KTJ86_RS06515 (1330715) | 1330715..1330930 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1331034) | 1331034..1331212 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1331034) | 1331034..1331212 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1331034) | 1331034..1331212 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1331034) | 1331034..1331212 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| KTJ86_RS06520 (1331009) | 1331009..1331218 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| KTJ86_RS06525 (1331211) | 1331211..1331405 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| KTJ86_RS06530 (1331462) | 1331462..1332271 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| KTJ86_RS06535 (1332264) | 1332264..1334864 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| KTJ86_RS06540 (1334966) | 1334966..1335241 | - | 276 | WP_000632297.1 | protein RacC | - |
| KTJ86_RS06545 (1335316) | 1335316..1335486 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| KTJ86_RS06550 (1335486) | 1335486..1335707 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| KTJ86_RS06555 (1336149) | 1336149..1336637 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| KTJ86_RS06560 (1336634) | 1336634..1336789 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| KTJ86_RS22015 (1336800) | 1336800..1336934 | - | 135 | WP_000233809.1 | phage protein | - |
| KTJ86_RS06565 (1337243) | 1337243..1337719 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| KTJ86_RS06570 (1337843) | 1337843..1338139 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| KTJ86_RS06575 (1338162) | 1338162..1338584 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| KTJ86_RS06580 (1338597) | 1338597..1339454 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| KTJ86_RS06585 (1339461) | 1339461..1340207 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| KTJ86_RS06590 (1340230) | 1340230..1340682 | + | 453 | Protein_1284 | DUF1627 domain-containing protein | - |
| KTJ86_RS06595 (1340878) | 1340878..1341063 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| KTJ86_RS06600 (1341260) | 1341260..1342717 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| KTJ86_RS06605 (1342855) | 1342855..1343118 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| KTJ86_RS06610 (1343099) | 1343099..1343458 | + | 360 | WP_000091628.1 | protein YdaY | - |
| KTJ86_RS06615 (1343932) | 1343932..1344864 | + | 933 | Protein_1289 | phage tail length tape measure family protein | - |
| KTJ86_RS06620 (1344867) | 1344867..1345082 | + | 216 | Protein_1290 | Ail/Lom family outer membrane beta-barrel protein | - |
| KTJ86_RS06625 (1345224) | 1345224..1346204 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| KTJ86_RS06630 (1346274) | 1346274..1346462 | + | 189 | Protein_1292 | Ail/Lom family outer membrane beta-barrel protein | - |
| KTJ86_RS06635 (1346527) | 1346527..1349889 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| KTJ86_RS06640 (1349889) | 1349889..1350464 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| KTJ86_RS06645 (1350562) | 1350562..1351152 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KTJ86_RS06650 (1351469) | 1351469..1351702 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| KTJ86_RS06655 (1351771) | 1351771..1351884 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KTJ86_RS06660 (1352663) | 1352663..1353097 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| KTJ86_RS06665 (1353238) | 1353238..1354371 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |