MGE detailed information
MGE type: Conjugative plasmid MGE length: 77652 bp
Accession: NZ_CP076263 Location: 1..77652 Organism: Escherichia coli strain 0-4 Replicon: plasmid p04IncF
Accession: NZ_CP076263 Location: 1..77652 Organism: Escherichia coli strain 0-4 Replicon: plasmid p04IncF
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A18_RS24405 (2608) | 2608..2877 | + | 270 | WP_000976359.1 | hypothetical protein | - |
| A7A18_RS24410 (3052) | 3052..3328 | - | 277 | Protein_2 | transposase | - |
| A7A18_RS24415 (3736) | 3736..4572 | - | 837 | WP_021534617.1 | Right origin-binding protein | VF |
| A7A18_RS24420 (4887) | 4887..5918 | - | 1032 | Protein_4 | IS3 family transposase | - |
| A7A18_RS24425 (6319) | 6319..7333 | + | 1015 | Protein_5 | integrase core domain-containing protein | - |
| A7A18_RS24435 (8134) | 8134..9081 | + | 948 | WP_001253824.1 | DMT family transporter | - |
| A7A18_RS24440 (9422) | 9422..9577 | + | 156 | Protein_7 | IS110 family transposase | - |
| A7A18_RS24445 (9973) | 9973..10224 | - | 252 | WP_001315600.1 | HTH domain-containing protein | - |
| A7A18_RS24450 (11574) | 11574..12431 | - | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| A7A18_RS24455 (12424) | 12424..12498 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| A7A18_RS24460 (12547) | 12547..12672 | + | 126 | WP_071590472.1 | replication protein RepA | - |
| A7A18_RS24465 (12745) | 12745..12993 | - | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| A7A18_RS24470 (13277) | 13277..13426 | - | 150 | WP_001300273.1 | Hok/Gef family protein | Toxin Detail |
| - (13470) | 13470..13531 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (13470) | 13470..13531 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (13470) | 13470..13531 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (13470) | 13470..13531 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| A7A18_RS24475 (14191) | 14191..14652 | - | 462 | WP_000760077.1 | thermonuclease family protein | - |
| A7A18_RS24480 (15395) | 15395..15598 | - | 204 | WP_001327131.1 | hypothetical protein | - |
| A7A18_RS24485 (15753) | 15753..16310 | - | 558 | WP_000139319.1 | fertility inhibition protein FinO | - |
| A7A18_RS24490 (16413) | 16413..17273 | - | 861 | WP_000704512.1 | putative protein YcjY | VF |
| A7A18_RS24495 (17332) | 17332..18078 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| A7A18_RS24500 (18098) | 18098..23369 | - | 5272 | Protein_19 | Multifunctional conjugation protein TraI | Relaxase |
| A7A18_RS24505 (23451) | 23451..23678 | + | 228 | WP_000450521.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| A7A18_RS24510 (23678) | 23678..24076 | + | 399 | WP_000911317.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| A7A18_RS24515 (24085) | 24085..26238 | - | 2154 | WP_021534620.1 | type IV conjugative transfer system coupling protein TraD | - |
| A7A18_RS24520 (26491) | 26491..27201 | - | 711 | WP_042032882.1 | conjugal transfer complement resistance protein TraT | - |
| A7A18_RS24525 (27247) | 27247..27768 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| A7A18_RS24530 (27801) | 27801..30617 | - | 2817 | WP_001007052.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| A7A18_RS24535 (30614) | 30614..31987 | - | 1374 | WP_000944319.1 | conjugal transfer pilus assembly protein TraH | - |
| A7A18_RS24540 (31974) | 31974..32366 | - | 393 | WP_001208952.1 | F-type conjugal transfer protein TrbF | - |
| A7A18_RS24545 (32353) | 32353..32694 | - | 342 | WP_001406994.1 | P-type conjugative transfer protein TrbJ | - |
| A7A18_RS24550 (32624) | 32624..33169 | - | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A7A18_RS24555 (33156) | 33156..33440 | - | 285 | WP_000624103.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| A7A18_RS24560 (33521) | 33521..33796 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| A7A18_RS24565 (33798) | 33798..34145 | - | 348 | WP_021534621.1 | conjugal transfer protein TrbA | - |
| A7A18_RS24570 (34161) | 34161..34904 | - | 744 | WP_122999181.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| A7A18_RS24575 (34897) | 34897..35154 | - | 258 | WP_000864346.1 | conjugal transfer protein TrbE | - |
| A7A18_RS24580 (35181) | 35181..36989 | - | 1809 | WP_000821074.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| A7A18_RS24585 (36986) | 36986..37624 | - | 639 | WP_001406992.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| A7A18_RS24590 (37633) | 37633..38625 | - | 993 | WP_000830186.1 | conjugal transfer pilus assembly protein TraU | - |
| A7A18_RS24595 (38622) | 38622..39254 | - | 633 | WP_001203716.1 | type-F conjugative transfer system protein TraW | - |
| A7A18_RS24600 (39251) | 39251..39637 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| A7A18_RS24605 (39634) | 39634..42261 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| A7A18_RS24610 (42421) | 42421..42642 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| A7A18_RS24615 (42777) | 42777..43292 | - | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| A7A18_RS24620 (43289) | 43289..43540 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| A7A18_RS24625 (43552) | 43552..43749 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| A7A18_RS24630 (43736) | 43736..44326 | - | 591 | WP_000002791.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| A7A18_RS24635 (44316) | 44316..45743 | - | 1428 | WP_000146689.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| A7A18_RS24640 (45743) | 45743..46471 | - | 729 | WP_021534622.1 | type-F conjugative transfer system secretin TraK | - |
| A7A18_RS24645 (46458) | 46458..47024 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| A7A18_RS24650 (47046) | 47046..47357 | - | 312 | WP_000012110.1 | type IV conjugative transfer system protein TraL | - |
| A7A18_RS24655 (47372) | 47372..47736 | - | 365 | Protein_50 | type IV conjugative transfer system pilin TraA | - |
| A7A18_RS24660 (47770) | 47770..47997 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| A7A18_RS24665 (48091) | 48091..48777 | - | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| A7A18_RS24670 (48967) | 48967..49350 | - | 384 | WP_000124980.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| A7A18_RS24675 (49684) | 49684..50286 | + | 603 | WP_000243717.1 | hypothetical protein | VF |
| A7A18_RS24680 (50581) | 50581..51402 | - | 822 | WP_001234477.1 | DUF932 domain-containing protein | - |
| A7A18_RS24685 (51519) | 51519..51806 | - | 288 | WP_000107547.1 | hypothetical protein | - |
| A7A18_RS24690 (52106) | 52106..52412 | + | 307 | Protein_57 | hypothetical protein | - |
| A7A18_RS24695 (52705) | 52705..52824 | - | 120 | WP_229484968.1 | Hok/Gef family protein | Toxin Detail |
| A7A18_RS24700 (52772) | 52772..52924 | - | 153 | Protein_59 | FlmC family protein | - |
| - (52912) | 52912..53128 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - (52912) | 52912..53128 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - (52912) | 52912..53128 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - (52912) | 52912..53128 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| A7A18_RS24705 (53097) | 53097..53859 | - | 763 | Protein_60 | plasmid SOS inhibition protein A | - |
| A7A18_RS24710 (53856) | 53856..54263 | - | 408 | WP_001261250.1 | conjugation system SOS inhibitor PsiB | - |
| A7A18_RS24715 (54424) | 54424..54603 | + | 180 | WP_000618107.1 | hypothetical protein | - |
| A7A18_RS24720 (54687) | 54687..55079 | - | 393 | WP_000272016.1 | plasmid partitioning/stability family protein | - |
| A7A18_RS24725 (55083) | 55083..56057 | - | 975 | WP_021534625.1 | plasmid segregation protein ParM | - |
| A7A18_RS24730 (56296) | 56296..56670 | - | 375 | WP_000752650.1 | hypothetical protein | - |
| A7A18_RS24735 (56670) | 56670..57302 | - | 633 | WP_000312330.1 | ParA family protein | - |
| A7A18_RS24740 (58150) | 58150..58905 | - | 756 | WP_000807693.1 | replication initiation protein RepE | - |
| A7A18_RS24745 (59462) | 59462..60112 | - | 651 | Protein_68 | site-specific integrase | - |
| A7A18_RS24750 (60161) | 60161..60524 | + | 364 | Protein_69 | zinc ribbon domain-containing protein | - |
| A7A18_RS24755 (60538) | 60538..60606 | - | 69 | WP_211180522.1 | protein YkiE | - |
| A7A18_RS24760 (60743) | 60743..61264 | + | 522 | WP_001283623.1 | putative RNA polymerase sigma factor FecI | VF |
| A7A18_RS24765 (61261) | 61261..62214 | + | 954 | WP_001068902.1 | ferric citrate uptake sigma factor regulator FecR | - |
| A7A18_RS24770 (62301) | 62301..64625 | + | 2325 | WP_021534628.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| A7A18_RS24775 (64670) | 64670..64757 | + | 88 | Protein_74 | hypothetical protein | - |
| A7A18_RS24780 (64828) | 64828..65100 | + | 273 | WP_000019163.1 | hypothetical protein | - |
| A7A18_RS24785 (65081) | 65081..65731 | + | 651 | Protein_76 | IS91 family transposase ISSbo1 | Transposase |
| A7A18_RS24790 (65790) | 65790..66007 | - | 218 | Protein_77 | transposase | - |
| A7A18_RS24795 (66008) | 66008..66538 | - | 531 | WP_000348884.1 | GNAT family N-acetyltransferase | Toxin Detail |
| A7A18_RS24800 (66542) | 66542..66811 | - | 270 | WP_001275013.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| A7A18_RS24805 (67699) | 67699..68688 | + | 990 | WP_024201093.1 | RepB family plasmid replication initiator protein | - |
| A7A18_RS24810 (68971) | 68971..69711 | - | 741 | WP_021534629.1 | tyrosine-type recombinase/integrase | - |
| A7A18_RS24815 (69832) | 69832..69966 | - | 135 | Protein_82 | serine/threonine protein kinase | - |
| A7A18_RS24820 (70463) | 70463..71962 | - | 1500 | WP_001263872.1 | alpha/beta hydrolase | - |
| A7A18_RS24825 (72055) | 72055..73002 | - | 948 | WP_001407138.1 | Outer membrane protease OmpP | VF |
| A7A18_RS24830 (74255) | 74255..75475 | + | 1221 | WP_000040078.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|