MGE detailed information
MGE type: Conjugative plasmid MGE length: 117341 bp
Accession: NZ_CP075853 Location: 1..117341 Organism: Escherichia coli strain S19-651 Replicon: plasmid pS19_651-a
Accession: NZ_CP075853 Location: 1..117341 Organism: Escherichia coli strain S19-651 Replicon: plasmid pS19_651-a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY28_RS25155 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| JFY28_RS25160 (1263) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| JFY28_RS25165 (2124) | 2124..2294 | - | 171 | WP_064764404.1 | hypothetical protein | - |
| JFY28_RS25170 (2319) | 2319..2445 | + | 127 | Protein_3 | epoxyqueuosine reductase QueH | - |
| JFY28_RS25175 (3610) | 3610..3948 | - | 339 | Protein_4 | IS66 family transposase ISEc8 | Transposase |
| JFY28_RS25180 (3998) | 3998..4345 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| JFY28_RS25185 (4342) | 4342..4722 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| JFY28_RS25190 (4939) | 4939..5138 | + | 200 | Protein_7 | IS3 family transposase IS3H | Transposase |
| JFY28_RS25195 (5137) | 5137..5274 | - | 138 | Protein_8 | transposase | - |
| JFY28_RS25200 (5363) | 5363..5560 | - | 198 | WP_032331365.1 | hypothetical protein | - |
| JFY28_RS25205 (5780) | 5780..5965 | + | 186 | Protein_10 | hypothetical protein | - |
| JFY28_RS25210 (5983) | 5983..6330 | - | 348 | WP_015387384.1 | DUF6404 family protein | - |
| JFY28_RS25215 (6632) | 6632..7114 | - | 483 | WP_032331368.1 | hypothetical protein | - |
| JFY28_RS25220 (7231) | 7231..7920 | - | 690 | Protein_13 | 3'-5' exonuclease | - |
| JFY28_RS25225 (8081) | 8081..8305 | - | 225 | WP_050439874.1 | hypothetical protein | - |
| JFY28_RS25230 (8557) | 8557..8886 | + | 330 | WP_032331369.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JFY28_RS25235 (8867) | 8867..9148 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| JFY28_RS25240 (9163) | 9163..9489 | + | 327 | WP_032331371.1 | DNA-binding protein | - |
| JFY28_RS25250 (9779) | 9779..10177 | + | 399 | Protein_18 | IS66 family transposase ISEc23 | Transposase |
| JFY28_RS25260 (11640) | 11640..11843 | + | 204 | Protein_20 | hypothetical protein | - |
| JFY28_RS25265 (12501) | 12501..13678 | - | 1178 | Protein_21 | IS91 family transposase ISEc37 | Transposase |
| JFY28_RS25270 (13678) | 13678..14043 | - | 366 | WP_109538519.1 | transposase | - |
| JFY28_RS25275 (14343) | 14343..14732 | - | 390 | WP_032331473.1 | cytochrome b562 | - |
| JFY28_RS25280 (14776) | 14776..16983 | - | 2208 | WP_032331474.1 | Catalase-peroxidase | VF |
| JFY28_RS25285 (17196) | 17196..17890 | - | 695 | Protein_25 | IS1 family transposase | - |
| JFY28_RS25290 (17926) | 17926..18195 | - | 270 | WP_032331475.1 | type II toxin-antitoxin system antitoxin YacA | - |
| JFY28_RS25295 (18381) | 18381..19418 | - | 1038 | WP_032331477.1 | DNA-binding protein | - |
| JFY28_RS25300 (19768) | 19768..20565 | - | 798 | WP_217077972.1 | IS21 family transposase IS21 | Transposase |
| JFY28_RS25305 (20565) | 20565..21737 | - | 1173 | WP_000952373.1 | IS21 family transposase IS21 | Transposase |
| JFY28_RS26810 (22564) | 22564..23313 | + | 750 | WP_001336444.1 | polymer-forming cytoskeletal protein | - |
| JFY28_RS25315 (23999) | 23999..24559 | - | 561 | WP_234276711.1 | Serine protease EspP | VF |
| JFY28_RS25320 (24674) | 24674..24817 | + | 144 | Protein_32 | IS3 family transposase IS911 | Transposase |
| JFY28_RS25325 (24904) | 24904..26132 | + | 1229 | WP_109538545.1 | IS3 family transposase IS2 | Transposase |
| JFY28_RS25330 (26142) | 26142..26261 | + | 120 | Protein_34 | IS3 family transposase | - |
| JFY28_RS25335 (26319) | 26319..26975 | + | 657 | Protein_35 | IS30 family transposase IS30D | Transposase |
| JFY28_RS25340 (26977) | 26977..27812 | + | 836 | Protein_36 | IS91 family transposase ISEc37 | Transposase |
| JFY28_RS25345 (27845) | 27845..30730 | - | 2886 | WP_001138082.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| JFY28_RS25350 (30856) | 30856..31470 | + | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| JFY28_RS25355 (31751) | 31751..33328 | - | 1578 | WP_001323889.1 | Aerotaxis receptor | VF |
| JFY28_RS25360 (33638) | 33638..34198 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| JFY28_RS25365 (34202) | 34202..37168 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| JFY28_RS25370 (37186) | 37186..38309 | + | 1124 | WP_201789284.1 | IS3 family transposase IS1133 | Transposase |
| JFY28_RS25375 (38416) | 38416..39219 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| JFY28_RS25380 (39219) | 39219..40055 | + | 837 | WP_041124075.1 | hypothetical protein | ARG |
| JFY28_RS25385 (40162) | 40162..40341 | + | 180 | Protein_45 | IS91 family transposase ISEc37 | Transposase |
| JFY28_RS25390 (40527) | 40527..41048 | + | 522 | Protein_46 | IS3 family transposase ISSd1 | Transposase |
| JFY28_RS25395 (41092) | 41092..41301 | - | 210 | Protein_47 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JFY28_RS25400 (41301) | 41301..41585 | - | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | - |
| JFY28_RS25405 (42496) | 42496..43329 | - | 834 | WP_175109978.1 | incFII family plasmid replication initiator RepA | - |
| JFY28_RS25410 (43322) | 43322..43804 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| JFY28_RS26815 (43797) | 43797..43844 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| JFY28_RS26820 (43835) | 43835..44086 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| JFY28_RS25420 (44103) | 44103..44360 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| JFY28_RS25425 (44644) | 44644..44793 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (44837) | 44837..44898 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44837) | 44837..44898 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44837) | 44837..44898 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44837) | 44837..44898 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| JFY28_RS25430 (45154) | 45154..45228 | - | 75 | Protein_55 | endonuclease | - |
| JFY28_RS25435 (45474) | 45474..45686 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| JFY28_RS25440 (45822) | 45822..46382 | - | 561 | WP_025670714.1 | fertility inhibition protein FinO | - |
| JFY28_RS25445 (46485) | 46485..47345 | - | 861 | WP_000704513.1 | putative protein YcjY | VF |
| JFY28_RS25450 (47404) | 47404..48150 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| JFY28_RS25455 (48170) | 48170..53437 | - | 5268 | WP_025670715.1 | Multifunctional conjugation protein TraI | Relaxase |
| JFY28_RS25460 (53519) | 53519..53746 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JFY28_RS25465 (53746) | 53746..54144 | + | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| JFY28_RS25470 (54153) | 54153..56306 | - | 2154 | WP_032330953.1 | type IV conjugative transfer system coupling protein TraD | - |
| JFY28_RS25475 (56559) | 56559..57269 | - | 711 | WP_231793510.1 | conjugal transfer complement resistance protein TraT | - |
| JFY28_RS25480 (57304) | 57304..57813 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| JFY28_RS25485 (57810) | 57810..60635 | - | 2826 | WP_025670717.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| JFY28_RS25490 (60632) | 60632..62005 | - | 1374 | WP_000944319.1 | conjugal transfer pilus assembly protein TraH | - |
| JFY28_RS26825 (61992) | 61992..62384 | - | 393 | Protein_68 | F-type conjugal transfer protein TrbF | - |
| JFY28_RS25495 (62371) | 62371..62712 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| JFY28_RS25500 (62642) | 62642..63187 | - | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JFY28_RS25505 (63174) | 63174..63458 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JFY28_RS25510 (63539) | 63539..63814 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| JFY28_RS25515 (63816) | 63816..64163 | - | 348 | WP_001287907.1 | conjugal transfer protein TrbA | - |
| JFY28_RS25520 (64179) | 64179..64922 | - | 744 | WP_025670718.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JFY28_RS25525 (64915) | 64915..65172 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| JFY28_RS25530 (65199) | 65199..67007 | - | 1809 | WP_025670719.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JFY28_RS25535 (67004) | 67004..67642 | - | 639 | WP_000777703.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JFY28_RS25540 (67651) | 67651..68643 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| JFY28_RS25545 (68640) | 68640..69272 | - | 633 | WP_025670720.1 | type-F conjugative transfer system protein TraW | - |
| JFY28_RS25550 (69269) | 69269..69655 | - | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| JFY28_RS25555 (69652) | 69652..72279 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| JFY28_RS25560 (72439) | 72439..72660 | - | 222 | WP_032330955.1 | conjugal transfer protein TraR | - |
| JFY28_RS25565 (72795) | 72795..73311 | - | 517 | Protein_83 | type IV conjugative transfer system lipoprotein TraV | - |
| JFY28_RS25570 (73308) | 73308..73559 | - | 252 | WP_001038351.1 | conjugal transfer protein TrbG | - |
| JFY28_RS25575 (73571) | 73571..73768 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| JFY28_RS25580 (73755) | 73755..74345 | - | 591 | WP_000002787.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JFY28_RS25585 (74335) | 74335..75762 | - | 1428 | WP_025670721.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JFY28_RS25590 (75762) | 75762..76490 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JFY28_RS25595 (76477) | 76477..77043 | - | 567 | WP_001563715.1 | type IV conjugative transfer system protein TraE | - |
| JFY28_RS25600 (77065) | 77065..77376 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| JFY28_RS25605 (77391) | 77391..77756 | - | 366 | WP_000340276.1 | type IV conjugative transfer system pilin TraA | - |
| JFY28_RS25610 (77790) | 77790..78017 | - | 228 | WP_001442099.1 | conjugal transfer relaxosome protein TraY | - |
| JFY28_RS25615 (78111) | 78111..78797 | - | 687 | WP_000332490.1 | PAS domain-containing protein | - |
| JFY28_RS25620 (78987) | 78987..79370 | - | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JFY28_RS25625 (79692) | 79692..80294 | + | 603 | Protein_95 | hypothetical protein | VF |
| JFY28_RS25630 (80590) | 80590..81411 | - | 822 | WP_001234468.1 | DUF932 domain-containing protein | - |
| JFY28_RS25635 (81530) | 81530..81817 | - | 288 | WP_000107520.1 | hypothetical protein | - |
| JFY28_RS25640 (82118) | 82118..82415 | + | 298 | Protein_98 | hypothetical protein | - |
| JFY28_RS25645 (82716) | 82716..82838 | - | 123 | WP_223195199.1 | Hok/Gef family protein | Toxin Detail |
| JFY28_RS26830 (82783) | 82783..82896 | - | 114 | Protein_100 | DUF5431 family protein | - |
| - (82930) | 82930..83141 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (82930) | 82930..83141 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (82930) | 82930..83141 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (82930) | 82930..83141 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| JFY28_RS25650 (83086) | 83086..83872 | - | 787 | Protein_101 | plasmid SOS inhibition protein A | - |
| JFY28_RS25655 (83869) | 83869..84303 | - | 435 | WP_000845922.1 | conjugation system SOS inhibitor PsiB | - |
| JFY28_RS25660 (84358) | 84358..86316 | - | 1959 | WP_025670724.1 | ParB/RepB/Spo0J family partition protein | - |
| JFY28_RS25665 (86380) | 86380..86613 | - | 234 | WP_001553739.1 | DUF905 family protein | - |
| JFY28_RS25670 (86671) | 86671..87210 | - | 540 | WP_025670725.1 | single-stranded DNA-binding protein | - |
| JFY28_RS25675 (87236) | 87236..87442 | - | 207 | WP_000547969.1 | hypothetical protein | - |
| JFY28_RS25680 (87512) | 87512..87937 | + | 426 | WP_071791129.1 | hypothetical protein | - |
| JFY28_RS25685 (88023) | 88023..88586 | - | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| JFY28_RS25690 (88634) | 88634..89995 | - | 1362 | WP_000170680.1 | DUF3560 domain-containing protein | - |
| JFY28_RS25695 (90047) | 90047..90277 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| JFY28_RS26835 (90794) | 90794..91047 | + | 254 | Protein_111 | hypothetical protein | - |
| JFY28_RS25705 (91271) | 91271..91453 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| JFY28_RS25710 (91453) | 91453..91914 | - | 462 | WP_050439867.1 | DUF1380 family protein | - |
| JFY28_RS25715 (91914) | 91914..92339 | - | 426 | WP_001198922.1 | antirestriction protein | - |
| JFY28_RS25720 (92741) | 92741..93712 | + | 972 | WP_198798520.1 | IS110 family transposase ISEc32 | Transposase |
| JFY28_RS25725 (93973) | 93973..94185 | - | 213 | WP_000092896.1 | hypothetical protein | - |
| JFY28_RS25730 (94198) | 94198..94773 | - | 576 | WP_000343071.1 | hypothetical protein | - |
| JFY28_RS25735 (94842) | 94842..95189 | - | 348 | WP_001350917.1 | hypothetical protein | - |
| JFY28_RS26840 (95186) | 95186..95355 | - | 170 | Protein_119 | hypothetical protein | - |
| JFY28_RS25740 (95949) | 95949..96920 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| JFY28_RS25745 (96920) | 96920..98086 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| JFY28_RS25755 (99611) | 99611..101812 | - | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| JFY28_RS25760 (101838) | 101838..103171 | - | 1334 | Protein_124 | L-lysine N6-monooxygenase | VF |
| JFY28_RS25765 (103168) | 103168..104910 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| JFY28_RS25770 (104910) | 104910..105857 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| JFY28_RS25775 (105858) | 105858..107582 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| JFY28_RS25780 (107718) | 107718..108911 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| JFY28_RS25785 (109291) | 109291..109671 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| JFY28_RS25790 (110012) | 110012..110425 | - | 414 | Protein_130 | phosphopyruvate hydratase | - |
| JFY28_RS25795 (110423) | 110423..110680 | + | 258 | Protein_131 | transposase | - |
| JFY28_RS25800 (110914) | 110914..111771 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| JFY28_RS25805 (111768) | 111768..112625 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| JFY28_RS25810 (112622) | 112622..113449 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| JFY28_RS25815 (113449) | 113449..114363 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| JFY28_RS25820 (114719) | 114719..115416 | + | 698 | WP_223230354.1 | IS1 family transposase IS1S | Transposase |
| JFY28_RS25825 (115596) | 115596..116109 | - | 514 | Protein_137 | DUF4113 domain-containing protein | - |
| JFY28_RS25830 (116170) | 116170..116274 | - | 105 | Protein_138 | AAA family ATPase | - |
| JFY28_RS25835 (116276) | 116276..116599 | - | 324 | Protein_139 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|