MGE detailed information
MGE type: Prophage MGE length: 8693 bp
Accession: NZ_CP075116 Location: 315626..324318 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Accession: NZ_CP075116 Location: 315626..324318 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO40_RS01420 (311430) | 311430..312533 | + | 1104 | WP_001676601.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| CCO40_RS01425 (312617) | 312617..312751 | - | 135 | WP_001517957.1 | hypothetical protein | - |
| CCO40_RS01430 (312729) | 312729..313112 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| CCO40_RS01435 (313534) | 313534..314643 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| CCO40_RS01440 (314703) | 314703..315629 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| CCO40_RS01445 (315626) | 315626..316903 | + | 1278 | WP_000803764.1 | branched chain amino acid ABC transporter permease LivM | - |
| CCO40_RS01450 (316900) | 316900..317667 | + | 768 | WP_000082083.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| CCO40_RS01455 (317669) | 317669..318382 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| CCO40_RS01460 (318513) | 318513..318734 | + | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CCO40_RS01465 (318731) | 318731..319099 | + | 369 | WP_001536192.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CCO40_RS01470 (319359) | 319359..320675 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| CCO40_RS01475 (320780) | 320780..321667 | + | 888 | WP_000094074.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| CCO40_RS01480 (321664) | 321664..322509 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| CCO40_RS01485 (322511) | 322511..323581 | + | 1071 | WP_094889149.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| CCO40_RS01490 (323578) | 323578..324318 | + | 741 | WP_000073542.1 | glycerophosphodiester phosphodiesterase | - |
| CCO40_RS01495 (324331) | 324331..324747 | - | 417 | WP_000826041.1 | DUF2756 family protein | - |
| CCO40_RS01500 (324873) | 324873..326615 | + | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| CCO40_RS01505 (326660) | 326660..327694 | - | 1035 | WP_000675708.1 | phosphotriesterase | - |
| CCO40_RS01510 (327691) | 327691..328662 | - | 972 | WP_001038949.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.01 |