MGE detailed information
MGE type: Conjugative plasmid MGE length: 101266 bp
Accession: NZ_CP075064 Location: 1..101266 Organism: Escherichia coli strain EC_J_9 Replicon: plasmid pCTX_J9_3
Accession: NZ_CP075064 Location: 1..101266 Organism: Escherichia coli strain EC_J_9 Replicon: plasmid pCTX_J9_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4F96_RS24565 (1) | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| H4F96_RS24570 (1559) | 1559..1699 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| H4F96_RS24575 (1797) | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| H4F96_RS24580 (2543) | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| H4F96_RS24585 (2733) | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| H4F96_RS24590 (3383) | 3383..3798 | + | 416 | Protein_5 | IS1-like element IS1B family transposase | - |
| H4F96_RS24595 (3834) | 3834..4379 | - | 546 | Protein_6 | Tn3 family transposase TnpA_Tn3 | Transposase |
| H4F96_RS24600 (4445) | 4445..4537 | - | 93 | Protein_7 | IS6 family transposase | - |
| H4F96_RS24605 (4703) | 4703..5902 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| H4F96_RS24610 (5912) | 5912..6100 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| H4F96_RS24615 (6330) | 6330..6434 | + | 105 | WP_032409716.1 | hypothetical protein | - |
| H4F96_RS24620 (6563) | 6563..6820 | + | 258 | WP_213190807.1 | hypothetical protein | - |
| H4F96_RS24625 (6878) | 6878..7654 | - | 777 | WP_000015958.1 | site-specific integrase | - |
| H4F96_RS24630 (7651) | 7651..8394 | - | 744 | WP_004098973.1 | hypothetical protein | - |
| H4F96_RS24635 (8445) | 8445..8795 | - | 351 | WP_000493378.1 | hypothetical protein | - |
| H4F96_RS24640 (9347) | 9347..10435 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| H4F96_RS24645 (10437) | 10437..12662 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| H4F96_RS24650 (12712) | 12712..13611 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| H4F96_RS24655 (13601) | 13601..13891 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| H4F96_RS24660 (14187) | 14187..14417 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| H4F96_RS24665 (14414) | 14414..14830 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| H4F96_RS24670 (14992) | 14992..17130 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| H4F96_RS24675 (17484) | 17484..17741 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| H4F96_RS24680 (17741) | 17741..18331 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| H4F96_RS24685 (18594) | 18594..20150 | + | 1557 | WP_000818556.1 | AAA family ATPase | - |
| H4F96_RS24690 (20342) | 20342..20959 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| H4F96_RS24695 (21252) | 21252..22289 | - | 1038 | WP_044502555.1 | permease | - |
| H4F96_RS24700 (22394) | 22394..22717 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| H4F96_RS24705 (22916) | 22916..23620 | + | 705 | WP_102204227.1 | IS6-like element IS26 family transposase | - |
| H4F96_RS24710 (23626) | 23626..24354 | + | 729 | WP_152921961.1 | replication initiation protein | - |
| H4F96_RS24715 (25962) | 25962..26558 | - | 597 | WP_000583524.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| H4F96_RS24720 (26615) | 26615..26791 | - | 177 | Protein_31 | IS6 family transposase IS26 | Transposase |
| H4F96_RS24725 (26780) | 26780..27583 | + | 804 | Protein_32 | Mobilization protein A | Relaxase |
| H4F96_RS24730 (27596) | 27596..28180 | + | 585 | WP_023281055.1 | mobilization protein MobX | - |
| H4F96_RS24735 (28223) | 28223..30859 | - | 2637 | WP_023281054.1 | DEAD/DEAH box helicase family protein | - |
| H4F96_RS24740 (30864) | 30864..32912 | - | 2049 | WP_023281053.1 | site-specific DNA-methyltransferase | - |
| H4F96_RS24745 (33161) | 33161..33364 | - | 204 | WP_001567330.1 | hypothetical protein | - |
| H4F96_RS24750 (33407) | 33407..33814 | - | 408 | WP_001567331.1 | hypothetical protein | - |
| H4F96_RS24755 (33886) | 33886..34428 | - | 543 | WP_039021303.1 | hypothetical protein | - |
| H4F96_RS24760 (34412) | 34412..34861 | - | 450 | WP_039021304.1 | hypothetical protein | - |
| H4F96_RS24765 (34872) | 34872..35411 | - | 540 | WP_039021305.1 | hypothetical protein | - |
| H4F96_RS24770 (35931) | 35931..36080 | - | 150 | WP_152930637.1 | hypothetical protein | - |
| H4F96_RS24775 (36059) | 36059..36508 | - | 450 | WP_023281052.1 | helix-turn-helix domain-containing protein | - |
| H4F96_RS25890 (36516) | 36516..36842 | - | 327 | WP_157698536.1 | hypothetical protein | - |
| H4F96_RS24785 (36819) | 36819..37523 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| H4F96_RS24790 (37578) | 37578..38003 | + | 426 | Protein_45 | TetR/AcrR family transcriptional regulator | - |
| H4F96_RS24795 (38023) | 38023..38811 | + | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| H4F96_RS24800 (38811) | 38811..39329 | + | 519 | WP_014839979.1 | FidL-like protein | - |
| H4F96_RS24805 (39334) | 39334..39750 | - | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| H4F96_RS24810 (40136) | 40136..40840 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| H4F96_RS24815 (40890) | 40890..41633 | + | 744 | Protein_50 | Beta-lactamase TEM | ARG |
| H4F96_RS24820 (41892) | 41892..42368 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| H4F96_RS24825 (42415) | 42415..43290 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| H4F96_RS24830 (43712) | 43712..44416 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| H4F96_RS24835 (44482) | 44482..44547 | + | 66 | Protein_54 | IS1 family transposase | - |
| H4F96_RS24840 (45996) | 45996..46230 | + | 235 | Protein_55 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| H4F96_RS24845 (46358) | 46358..46561 | + | 204 | Protein_56 | hypothetical protein | - |
| H4F96_RS24850 (46762) | 46762..47112 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| H4F96_RS24855 (47115) | 47115..48077 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| H4F96_RS24860 (48224) | 48224..48517 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| H4F96_RS24865 (48594) | 48594..49277 | + | 684 | WP_000085883.1 | DNA methylase | - |
| H4F96_RS24870 (49278) | 49278..49499 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| H4F96_RS24875 (49513) | 49513..49947 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| H4F96_RS24880 (49998) | 49998..50774 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| H4F96_RS24885 (51192) | 51192..51617 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| H4F96_RS24890 (51664) | 51664..52086 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| H4F96_RS24895 (52083) | 52083..52274 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| H4F96_RS24900 (52488) | 52488..52643 | + | 156 | WP_159420149.1 | hypothetical protein | - |
| H4F96_RS24905 (53312) | 53312..53542 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| H4F96_RS24910 (53594) | 53594..54955 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| H4F96_RS24915 (55002) | 55002..55565 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| H4F96_RS24920 (55651) | 55651..56100 | - | 450 | Protein_71 | hypothetical protein | - |
| H4F96_RS24925 (56402) | 56402..56929 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| H4F96_RS24930 (56987) | 56987..57220 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| H4F96_RS24935 (57281) | 57281..59304 | + | 2024 | Protein_74 | ParB/RepB/Spo0J family partition protein | - |
| H4F96_RS24940 (59373) | 59373..59807 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| H4F96_RS24945 (59804) | 59804..60566 | + | 763 | Protein_76 | plasmid SOS inhibition protein A | - |
| H4F96_RS24950 (60544) | 60544..60723 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (60535) | 60535..60759 | + | 225 | NuclAT_0 | - | - |
| - (60535) | 60535..60759 | + | 225 | NuclAT_0 | - | - |
| - (60535) | 60535..60759 | + | 225 | NuclAT_0 | - | - |
| - (60535) | 60535..60759 | + | 225 | NuclAT_0 | - | - |
| H4F96_RS25895 (60745) | 60745..60894 | + | 150 | Protein_78 | plasmid maintenance protein Mok | - |
| H4F96_RS24955 (60836) | 60836..60961 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| H4F96_RS24960 (61280) | 61280..61576 | - | 297 | Protein_80 | hypothetical protein | - |
| H4F96_RS24965 (61876) | 61876..62172 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| H4F96_RS24970 (62283) | 62283..63104 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| H4F96_RS24975 (63401) | 63401..64048 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| H4F96_RS24980 (64325) | 64325..64708 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| H4F96_RS24985 (64899) | 64899..65585 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| H4F96_RS24990 (65679) | 65679..65906 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| H4F96_RS24995 (65940) | 65940..66305 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| H4F96_RS25000 (66320) | 66320..66631 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| H4F96_RS25005 (66653) | 66653..67219 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| H4F96_RS25010 (67206) | 67206..67934 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| H4F96_RS25015 (67934) | 67934..69361 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| H4F96_RS25020 (69351) | 69351..69941 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| H4F96_RS25025 (69928) | 69928..70125 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| H4F96_RS25030 (70137) | 70137..70388 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| H4F96_RS25035 (70385) | 70385..70900 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| H4F96_RS25040 (71035) | 71035..71256 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| H4F96_RS25045 (71416) | 71416..74043 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| H4F96_RS25050 (74040) | 74040..74426 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| H4F96_RS25055 (74423) | 74423..75055 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| H4F96_RS25060 (75052) | 75052..76044 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| H4F96_RS25065 (76071) | 76071..76379 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| H4F96_RS25070 (76442) | 76442..76963 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| H4F96_RS25075 (76990) | 76990..77628 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| H4F96_RS25080 (77625) | 77625..77996 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| H4F96_RS25085 (78022) | 78022..78444 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| H4F96_RS25090 (78441) | 78441..80291 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| H4F96_RS25095 (80318) | 80318..80575 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| H4F96_RS25100 (80568) | 80568..81311 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| H4F96_RS25105 (81472) | 81472..81708 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| H4F96_RS25110 (81695) | 81695..82240 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| H4F96_RS25115 (82230) | 82230..82544 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| H4F96_RS25120 (82498) | 82498..82890 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| H4F96_RS25125 (82877) | 82877..84250 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| H4F96_RS25130 (84247) | 84247..87063 | + | 2817 | WP_015059018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| H4F96_RS25135 (87096) | 87096..87617 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| H4F96_RS25140 (87642) | 87642..88373 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| H4F96_RS25145 (88576) | 88576..89313 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| H4F96_RS25150 (89364) | 89364..91607 | + | 2244 | WP_072646483.1 | type IV conjugative transfer system coupling protein TraD | - |
| H4F96_RS25155 (91607) | 91607..96877 | + | 5271 | WP_213190806.1 | Multifunctional conjugation protein TraI | Relaxase |
| H4F96_RS25160 (96897) | 96897..97643 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| H4F96_RS25165 (97698) | 97698..98258 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| H4F96_RS25170 (98390) | 98390..98590 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| H4F96_RS25175 (98976) | 98976..99575 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| H4F96_RS25180 (99652) | 99652..99969 | + | 318 | WP_153449145.1 | hypothetical protein | - |
| - (100170) | 100170..100229 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (100170) | 100170..100229 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (100170) | 100170..100229 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (100170) | 100170..100229 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| H4F96_RS25185 (100274) | 100274..100423 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| H4F96_RS25190 (100707) | 100707..100955 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|