MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP072054 Location: 3996347..4028227 Organism: Escherichia coli strain K1508 Replicon: chromosome
Accession: NZ_CP072054 Location: 3996347..4028227 Organism: Escherichia coli strain K1508 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5N95_RS19215 (3992531) | 3992531..3993799 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| J5N95_RS19220 (3993819) | 3993819..3994796 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| J5N95_RS19225 (3995132) | 3995132..3997384 | - | 2253 | Protein_3795 | alpha-amylase family glycosyl hydrolase | - |
| J5N95_RS19235 (3998770) | 3998770..4000143 | + | 1374 | Protein_3796 | DUF5507 domain-containing protein | - |
| J5N95_RS19240 (4000498) | 4000498..4000716 | + | 219 | WP_071524906.1 | recombinase family protein | - |
| J5N95_RS19245 (4000871) | 4000871..4000990 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| J5N95_RS19250 (4001055) | 4001055..4005635 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| J5N95_RS19255 (4005999) | 4005999..4006328 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| J5N95_RS19260 (4006349) | 4006349..4006666 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| J5N95_RS19265 (4006704) | 4006704..4006904 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| J5N95_RS19270 (4006913) | 4006913..4007395 | - | 483 | WP_001407480.1 | RadC family protein | - |
| J5N95_RS19275 (4007404) | 4007404..4007862 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| J5N95_RS19280 (4007965) | 4007965..4008188 | - | 224 | Protein_3805 | DUF905 family protein | - |
| J5N95_RS19285 (4008760) | 4008760..4010463 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| J5N95_RS19290 (4010605) | 4010605..4011614 | + | 1010 | Protein_3807 | arsenic transporter | - |
| J5N95_RS21965 (4011627) | 4011627..4011779 | + | 153 | Protein_3808 | arsenate reductase | - |
| J5N95_RS19300 (4012166) | 4012166..4012633 | - | 468 | WP_000702495.1 | protein YfjT | - |
| J5N95_RS19305 (4012657) | 4012657..4013100 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| J5N95_RS19310 (4013100) | 4013100..4013336 | - | 237 | WP_001144029.1 | protein YpjK | - |
| J5N95_RS19315 (4013377) | 4013377..4014078 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| J5N95_RS19320 (4014295) | 4014295..4015116 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| J5N95_RS19325 (4015208) | 4015208..4016071 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| J5N95_RS19330 (4016426) | 4016426..4016797 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| J5N95_RS19335 (4016790) | 4016790..4017863 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| J5N95_RS19340 (4018005) | 4018005..4018268 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| J5N95_RS19345 (4018628) | 4018628..4020244 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| J5N95_RS19350 (4020241) | 4020241..4022430 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| J5N95_RS19355 (4022608) | 4022608..4023234 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| J5N95_RS19360 (4023387) | 4023387..4024796 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| J5N95_RS19365 (4024925) | 4024925..4025137 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| J5N95_RS19370 (4025181) | 4025181..4026137 | + | 957 | WP_000510827.1 | protein YfjH | - |
| J5N95_RS19375 (4026381) | 4026381..4027622 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| J5N95_RS19385 (4028403) | 4028403..4028885 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| J5N95_RS19390 (4029056) | 4029056..4029493 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| J5N95_RS19395 (4029483) | 4029483..4029773 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| J5N95_RS19400 (4029835) | 4029835..4030176 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| J5N95_RS19405 (4030325) | 4030325..4031986 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| J5N95_RS19410 (4032072) | 4032072..4032950 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |