MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP072054 Location: 1300529..1322203 Organism: Escherichia coli strain K1508 Replicon: chromosome
Accession: NZ_CP072054 Location: 1300529..1322203 Organism: Escherichia coli strain K1508 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5N95_RS21795 (1296518) | 1296518..1296565 | + | 48 | WP_211180494.1 | protein YnaN | - |
| J5N95_RS06325 (1296579) | 1296579..1297562 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| J5N95_RS22025 (1297837) | 1297837..1298010 | + | 174 | WP_001296046.1 | protein YnaL | - |
| J5N95_RS06330 (1298040) | 1298040..1299413 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| J5N95_RS06335 (1299542) | 1299542..1300477 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| J5N95_RS06340 (1300529) | 1300529..1301764 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| J5N95_RS06345 (1301766) | 1301766..1301981 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1302085) | 1302085..1302263 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1302085) | 1302085..1302263 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1302085) | 1302085..1302263 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1302085) | 1302085..1302263 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| J5N95_RS06350 (1302060) | 1302060..1302269 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| J5N95_RS06355 (1302262) | 1302262..1302456 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| J5N95_RS06360 (1302513) | 1302513..1303322 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| J5N95_RS06365 (1303315) | 1303315..1305915 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| J5N95_RS06370 (1306017) | 1306017..1306292 | - | 276 | WP_000632297.1 | protein RacC | - |
| J5N95_RS06375 (1306367) | 1306367..1306537 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| J5N95_RS06380 (1306537) | 1306537..1306758 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| J5N95_RS06385 (1307200) | 1307200..1307688 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| J5N95_RS06390 (1307685) | 1307685..1307840 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| J5N95_RS22030 (1307851) | 1307851..1307985 | - | 135 | WP_000233809.1 | phage protein | - |
| J5N95_RS06395 (1308294) | 1308294..1308770 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| J5N95_RS06400 (1308894) | 1308894..1309190 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| J5N95_RS06405 (1309213) | 1309213..1309635 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| J5N95_RS06410 (1309648) | 1309648..1310505 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| J5N95_RS06415 (1310512) | 1310512..1311258 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| J5N95_RS06420 (1311281) | 1311281..1311733 | + | 453 | Protein_1260 | DUF1627 domain-containing protein | - |
| J5N95_RS06425 (1311929) | 1311929..1312114 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| J5N95_RS06430 (1312311) | 1312311..1313768 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| J5N95_RS06435 (1313906) | 1313906..1314169 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| J5N95_RS06440 (1314150) | 1314150..1314509 | + | 360 | WP_000091628.1 | protein YdaY | - |
| J5N95_RS06445 (1314983) | 1314983..1315915 | + | 933 | Protein_1265 | phage tail length tape measure family protein | - |
| J5N95_RS06450 (1315918) | 1315918..1316133 | + | 216 | Protein_1266 | Ail/Lom family outer membrane beta-barrel protein | - |
| J5N95_RS06455 (1316275) | 1316275..1317255 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| J5N95_RS06460 (1317325) | 1317325..1317513 | + | 189 | Protein_1268 | Ail/Lom family outer membrane beta-barrel protein | - |
| J5N95_RS06465 (1317578) | 1317578..1320940 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| J5N95_RS06470 (1320940) | 1320940..1321515 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| J5N95_RS06475 (1321613) | 1321613..1322203 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| J5N95_RS06480 (1322520) | 1322520..1322753 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| J5N95_RS06485 (1322822) | 1322822..1322935 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| J5N95_RS06490 (1323714) | 1323714..1324148 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| J5N95_RS06495 (1324289) | 1324289..1325422 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |