MGE detailed information
MGE type: Conjugative plasmid MGE length: 67408 bp
Accession: NZ_CP068284 Location: 1..67408 Organism: Escherichia coli strain CY598 Replicon: plasmid pCY598
Accession: NZ_CP068284 Location: 1..67408 Organism: Escherichia coli strain CY598 Replicon: plasmid pCY598
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS22870 (1328) | 1328..2083 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| JI738_RS22875 (2857) | 2857..3663 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| JI738_RS22880 (3664) | 3664..3969 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| JI738_RS22885 (3971) | 3971..4189 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| JI738_RS22890 (4769) | 4769..5857 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| JI738_RS22895 (5859) | 5859..8084 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| JI738_RS22900 (8134) | 8134..9033 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| JI738_RS22905 (9023) | 9023..9313 | - | 291 | WP_000538310.1 | hypothetical protein | - |
| JI738_RS22910 (9540) | 9540..12215 | + | 2676 | WP_000233113.1 | hypothetical protein | - |
| JI738_RS22915 (12407) | 12407..12553 | - | 147 | Protein_10 | 3'-5' exonuclease | - |
| JI738_RS22920 (12808) | 12808..12977 | - | 170 | Protein_11 | resolvase | - |
| JI738_RS22925 (12973) | 12973..13857 | - | 885 | WP_001345827.1 | hypothetical protein | - |
| JI738_RS22930 (14791) | 14791..15648 | - | 858 | WP_000774301.1 | incFII family plasmid replication initiator RepA | - |
| JI738_RS22935 (15641) | 15641..16123 | - | 483 | WP_001443034.1 | hypothetical protein | - |
| JI738_RS22940 (16116) | 16116..16190 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| JI738_RS22945 (16424) | 16424..16681 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| JI738_RS22950 (16965) | 16965..17114 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (17158) | 17158..17219 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (17158) | 17158..17219 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (17158) | 17158..17219 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (17158) | 17158..17219 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| JI738_RS22955 (17515) | 17515..17826 | + | 312 | WP_000802277.1 | hypothetical protein | - |
| JI738_RS22960 (18007) | 18007..18093 | - | 87 | Protein_19 | endonuclease | - |
| JI738_RS22965 (18291) | 18291..18479 | - | 189 | WP_001345829.1 | hypothetical protein | - |
| JI738_RS22970 (18614) | 18614..19174 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| JI738_RS22975 (19229) | 19229..19975 | - | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| JI738_RS22980 (19995) | 19995..25265 | - | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| JI738_RS22985 (25347) | 25347..25574 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JI738_RS22990 (25574) | 25574..25972 | + | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JI738_RS22995 (25981) | 25981..28134 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| JI738_RS23000 (28387) | 28387..29118 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| JI738_RS23005 (29143) | 29143..29664 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| JI738_RS23010 (29697) | 29697..32513 | - | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| JI738_RS23015 (32510) | 32510..33883 | - | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| JI738_RS23020 (33883) | 33883..34263 | - | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| JI738_RS23025 (34250) | 34250..34591 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| JI738_RS23030 (34521) | 34521..35066 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JI738_RS23035 (35053) | 35053..35337 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JI738_RS23040 (35418) | 35418..35732 | + | 315 | WP_000415566.1 | protein ArtA | - |
| JI738_RS23045 (35734) | 35734..36081 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| JI738_RS23050 (36097) | 36097..36840 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JI738_RS23055 (36833) | 36833..37090 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| JI738_RS23060 (37117) | 37117..38925 | - | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JI738_RS23065 (38922) | 38922..39560 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JI738_RS23070 (39569) | 39569..40561 | - | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| JI738_RS23075 (40558) | 40558..41190 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| JI738_RS23080 (41187) | 41187..41573 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| JI738_RS23085 (41570) | 41570..44197 | - | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| JI738_RS23090 (44357) | 44357..44578 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| JI738_RS23095 (44713) | 44713..45228 | - | 516 | WP_000809843.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JI738_RS23100 (45225) | 45225..45476 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| JI738_RS23105 (45488) | 45488..45685 | - | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| JI738_RS23110 (45672) | 45672..46262 | - | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JI738_RS23115 (46252) | 46252..47679 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JI738_RS23120 (47679) | 47679..48407 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JI738_RS23125 (48394) | 48394..48960 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| JI738_RS23130 (48982) | 48982..49293 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| JI738_RS23135 (49308) | 49308..49673 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| JI738_RS23140 (49706) | 49706..50107 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| JI738_RS23145 (50200) | 50200..50889 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| JI738_RS23150 (51076) | 51076..51459 | - | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JI738_RS23155 (51792) | 51792..52382 | + | 591 | WP_001375132.1 | hypothetical protein | VF |
| JI738_RS23160 (52678) | 52678..53499 | - | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| JI738_RS23165 (53618) | 53618..53905 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| JI738_RS23170 (53930) | 53930..54136 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| JI738_RS23175 (54206) | 54206..54502 | + | 297 | Protein_62 | hypothetical protein | - |
| JI738_RS23180 (54803) | 54803..54928 | - | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JI738_RS23410 (54870) | 54870..55019 | - | 150 | Protein_64 | DUF5431 family protein | - |
| - (55026) | 55026..55224 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (55026) | 55026..55224 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (55026) | 55026..55224 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (55026) | 55026..55224 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| JI738_RS23185 (55193) | 55193..55955 | - | 763 | Protein_65 | plasmid SOS inhibition protein A | - |
| JI738_RS23190 (55952) | 55952..56386 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| JI738_RS23195 (56441) | 56441..58399 | - | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| JI738_RS23200 (58465) | 58465..58698 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| JI738_RS23205 (58755) | 58755..59294 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| JI738_RS23210 (60100) | 60100..60291 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| JI738_RS23215 (60288) | 60288..60710 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| JI738_RS23220 (60757) | 60757..61182 | - | 426 | WP_001198920.1 | antirestriction protein | - |
| JI738_RS23225 (61596) | 61596..62372 | - | 777 | WP_001005032.1 | hypothetical protein | - |
| JI738_RS23230 (62418) | 62418..62972 | - | 555 | WP_001358893.1 | DUF1380 family protein | - |
| JI738_RS23235 (62866) | 62866..63087 | - | 222 | WP_001104904.1 | hypothetical protein | - |
| JI738_RS23240 (63088) | 63088..63771 | - | 684 | WP_000085939.1 | DNA methylase | - |
| JI738_RS23245 (63848) | 63848..64153 | - | 306 | WP_010892536.1 | hypothetical protein | - |
| JI738_RS23250 (64157) | 64157..65058 | - | 902 | Protein_78 | DUF1281 domain-containing protein | - |
| JI738_RS23255 (66011) | 66011..66982 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|