MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP068281 Location: 2654102..2675776 Organism: Escherichia coli strain CY706 Replicon: chromosome
Accession: NZ_CP068281 Location: 2654102..2675776 Organism: Escherichia coli strain CY706 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW04_RS12930 (2650091) | 2650091..2650138 | + | 48 | WP_211180494.1 | protein YnaN | - |
| JJW04_RS12935 (2650152) | 2650152..2651135 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| JJW04_RS12940 (2651613) | 2651613..2652986 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| JJW04_RS12945 (2653115) | 2653115..2654050 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| JJW04_RS12950 (2654102) | 2654102..2655337 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| JJW04_RS12955 (2655339) | 2655339..2655554 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (2655658) | 2655658..2655836 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2655658) | 2655658..2655836 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2655658) | 2655658..2655836 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2655658) | 2655658..2655836 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| JJW04_RS12960 (2655633) | 2655633..2655842 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| JJW04_RS12965 (2655835) | 2655835..2656029 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| JJW04_RS12970 (2656086) | 2656086..2656895 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| JJW04_RS12975 (2656888) | 2656888..2659488 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| JJW04_RS12980 (2659590) | 2659590..2659865 | - | 276 | WP_000632297.1 | protein RacC | - |
| JJW04_RS12985 (2659940) | 2659940..2660110 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| JJW04_RS12990 (2660110) | 2660110..2660331 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| JJW04_RS12995 (2660773) | 2660773..2661261 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| JJW04_RS13000 (2661258) | 2661258..2661413 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| JJW04_RS23225 (2661424) | 2661424..2661558 | - | 135 | WP_000233809.1 | phage protein | - |
| JJW04_RS13005 (2661867) | 2661867..2662343 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| JJW04_RS13010 (2662467) | 2662467..2662763 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| JJW04_RS13015 (2662786) | 2662786..2663208 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| JJW04_RS13020 (2663221) | 2663221..2664078 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| JJW04_RS13025 (2664085) | 2664085..2664831 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| JJW04_RS13030 (2664854) | 2664854..2665306 | + | 453 | Protein_2540 | DUF1627 domain-containing protein | - |
| JJW04_RS13035 (2665502) | 2665502..2665687 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| JJW04_RS13040 (2665884) | 2665884..2667341 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| JJW04_RS13045 (2667479) | 2667479..2667742 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| JJW04_RS13050 (2667723) | 2667723..2668082 | + | 360 | WP_000091628.1 | protein YdaY | - |
| JJW04_RS13055 (2668556) | 2668556..2669488 | + | 933 | Protein_2545 | phage tail length tape measure family protein | - |
| JJW04_RS13060 (2669491) | 2669491..2669706 | + | 216 | Protein_2546 | Ail/Lom family outer membrane beta-barrel protein | - |
| JJW04_RS13065 (2669848) | 2669848..2670828 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| JJW04_RS13070 (2670898) | 2670898..2671086 | + | 189 | Protein_2548 | Ail/Lom family outer membrane beta-barrel protein | - |
| JJW04_RS13075 (2671151) | 2671151..2674513 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JJW04_RS13080 (2674513) | 2674513..2675088 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| JJW04_RS13085 (2675186) | 2675186..2675776 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JJW04_RS13090 (2676093) | 2676093..2676326 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| JJW04_RS13095 (2676395) | 2676395..2676508 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JJW04_RS13100 (2677287) | 2677287..2677721 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| JJW04_RS13105 (2677862) | 2677862..2678995 | - | 1134 | WP_000837921.1 | porin OmpN | - |
| JJW04_RS13110 (2679129) | 2679129..2680109 | + | 981 | WP_000019403.1 | IS5-like element IS5 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |