MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 108781 bp
Accession: NZ_CP065407 Location: 1..108781 Organism: Diaphorobacter sp. JS3051 Replicon: plasmid pDCB1
Accession: NZ_CP065407 Location: 1..108781 Organism: Diaphorobacter sp. JS3051 Replicon: plasmid pDCB1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3K84_RS20635 () | 874..1038 | - | 165 | WP_196996187.1 | DNA gyrase inhibitor YacG | - |
| I3K84_RS20640 () | 1134..4049 | + | 2916 | WP_003049965.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| I3K84_RS20645 () | 4194..4430 | - | 237 | Protein_3 | TIGR02281 family clan AA aspartic protease | - |
| I3K84_RS20650 () | 4427..4828 | - | 402 | WP_017510473.1 | DUF1294 domain-containing protein | - |
| I3K84_RS20655 () | 4825..5589 | - | 765 | WP_196996209.1 | hypothetical protein | - |
| I3K84_RS20660 () | 5633..6469 | - | 837 | WP_196996188.1 | retroviral-like aspartic protease family protein | - |
| I3K84_RS20665 () | 6479..7534 | - | 1056 | WP_196996189.1 | hypothetical protein | VF |
| I3K84_RS20670 () | 7538..7813 | - | 276 | WP_063599687.1 | HU family DNA-binding protein | - |
| I3K84_RS20675 () | 7829..7972 | - | 144 | WP_196996190.1 | hypothetical protein | - |
| I3K84_RS20680 () | 7969..8493 | - | 525 | WP_063599688.1 | hypothetical protein | - |
| I3K84_RS20685 () | 8490..9701 | - | 1212 | WP_063599689.1 | DUF1173 domain-containing protein | - |
| I3K84_RS20690 () | 9713..10168 | - | 456 | WP_063599690.1 | hypothetical protein | - |
| I3K84_RS20695 () | 10186..11868 | - | 1683 | WP_063599691.1 | zeta toxin family protein | - |
| I3K84_RS20700 () | 11886..12146 | - | 261 | WP_011798679.1 | hypothetical protein | - |
| I3K84_RS20705 () | 12160..12621 | - | 462 | WP_063599692.1 | hypothetical protein | - |
| I3K84_RS20710 () | 12655..13743 | - | 1089 | WP_063599693.1 | Adenosine monophosphate-protein transferase VbhT | VF |
| I3K84_RS20715 () | 13740..13967 | - | 228 | WP_063599694.1 | antitoxin VbhA family protein | - |
| I3K84_RS20720 () | 13980..14225 | - | 246 | WP_063599695.1 | hypothetical protein | - |
| I3K84_RS20725 () | 14351..14722 | - | 372 | WP_196996191.1 | hypothetical protein | - |
| I3K84_RS20730 () | 14746..15270 | - | 525 | WP_027477962.1 | Dna2/Cas4 domain-containing protein | - |
| I3K84_RS20735 () | 15267..15680 | - | 414 | WP_027477961.1 | hypothetical protein | - |
| I3K84_RS20740 () | 15677..15895 | - | 219 | WP_063599696.1 | hypothetical protein | - |
| I3K84_RS20745 () | 15899..16159 | - | 261 | WP_063599697.1 | hypothetical protein | - |
| I3K84_RS20750 () | 16167..16892 | - | 726 | WP_063599698.1 | M48 family metalloprotease | - |
| I3K84_RS20755 () | 16968..17297 | - | 330 | WP_196996192.1 | hypothetical protein | - |
| I3K84_RS20760 () | 17381..17635 | + | 255 | WP_063599699.1 | hypothetical protein | - |
| I3K84_RS20765 () | 17653..17937 | + | 285 | WP_081256094.1 | hypothetical protein | - |
| I3K84_RS20770 () | 17962..21009 | - | 3048 | WP_196996193.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| I3K84_RS20775 () | 21021..22427 | - | 1407 | WP_009242099.1 | conjugal transfer protein TraH | - |
| I3K84_RS20780 () | 22438..23262 | - | 825 | WP_196996194.1 | conjugal transfer protein TraF | - |
| I3K84_RS20785 () | 23267..23629 | - | 363 | WP_009242097.1 | hypothetical protein | - |
| I3K84_RS20790 () | 23626..24882 | - | 1257 | WP_196996210.1 | conjugal transfer protein TraN | - |
| I3K84_RS20795 () | 24879..25952 | - | 1074 | WP_196996195.1 | conjugative transfer aggregate stability protein | - |
| I3K84_RS20800 () | 25949..26725 | - | 777 | WP_196996196.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| I3K84_RS20805 () | 26725..27726 | - | 1002 | WP_196996197.1 | TraU family protein | - |
| I3K84_RS20810 () | 27723..28361 | - | 639 | WP_196996198.1 | type-F conjugative transfer system protein TraW | - |
| I3K84_RS20815 () | 28348..28824 | - | 477 | WP_009242091.1 | S26 family signal peptidase | - |
| I3K84_RS20820 () | 28824..29249 | - | 426 | WP_196996199.1 | hypothetical protein | - |
| I3K84_RS20825 () | 29242..31863 | - | 2622 | WP_196996200.1 | type IV secretion system protein TraC | - |
| I3K84_RS20830 () | 31901..32551 | - | 651 | WP_196996201.1 | type IV conjugative transfer system lipoprotein TraV | - |
| I3K84_RS20835 () | 32548..32697 | - | 150 | WP_009242087.1 | hypothetical protein | - |
| I3K84_RS20840 () | 32694..33443 | - | 750 | WP_009242086.1 | DsbC family protein | - |
| I3K84_RS20845 () | 33436..34785 | - | 1350 | WP_009242085.1 | TraB/VirB10 family protein | - |
| I3K84_RS20850 () | 34778..35515 | - | 738 | WP_009277744.1 | type-F conjugative transfer system secretin TraK | - |
| I3K84_RS20855 () | 35451..36044 | - | 594 | WP_009242083.1 | type IV conjugative transfer system protein TraE | - |
| I3K84_RS20860 () | 36059..36352 | - | 294 | WP_009242082.1 | type IV conjugative transfer system protein TraL | - |
| I3K84_RS20865 () | 36368..36700 | - | 333 | WP_196996202.1 | conjugal transfer protein TrbC | - |
| I3K84_RS20870 () | 36795..37178 | - | 384 | WP_009242080.1 | hypothetical protein | - |
| I3K84_RS20875 () | 37180..37680 | - | 501 | WP_009242079.1 | hypothetical protein | VF |
| I3K84_RS20880 () | 38164..38823 | + | 660 | WP_009242078.1 | response regulator transcription factor | - |
| I3K84_RS20885 () | 38792..39760 | - | 969 | WP_196996203.1 | histidine kinase | - |
| I3K84_RS20890 () | 39769..40044 | - | 276 | WP_009242076.1 | YunC family protein | - |
| I3K84_RS20895 () | 40077..40931 | - | 855 | WP_009242075.1 | PAS domain-containing protein | - |
| I3K84_RS20900 () | 41022..41234 | - | 213 | WP_009242074.1 | hypothetical protein | - |
| I3K84_RS20905 () | 41376..44261 | - | 2886 | WP_196996204.1 | Multifunctional conjugation protein TraI | Relaxase |
| I3K84_RS20910 () | 44258..44713 | - | 456 | WP_009242072.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| I3K84_RS20915 () | 44725..46722 | - | 1998 | WP_009242071.1 | type IV secretion system DNA-binding domain-containing protein | - |
| I3K84_RS20920 () | 46724..47101 | - | 378 | WP_196996205.1 | hypothetical protein | - |
| I3K84_RS20925 () | 47414..47734 | + | 321 | WP_013723342.1 | hypothetical protein | - |
| I3K84_RS20930 () | 48327..48548 | + | 222 | WP_009242067.1 | hypothetical protein | - |
| I3K84_RS20935 () | 49184..49801 | - | 618 | WP_009242066.1 | recombinase family protein | - |
| I3K84_RS20940 () | 49809..50045 | - | 237 | WP_009242065.1 | hypothetical protein | - |
| I3K84_RS20945 () | 50058..50384 | - | 327 | WP_013723340.1 | hypothetical protein | - |
| I3K84_RS20950 () | 50399..50728 | - | 330 | WP_013723339.1 | hypothetical protein | - |
| I3K84_RS20955 () | 50901..51395 | - | 495 | WP_196996206.1 | DNA repair protein RadC | - |
| I3K84_RS20960 () | 51950..52168 | - | 219 | WP_009242061.1 | hypothetical protein | - |
| I3K84_RS20965 () | 52212..52661 | - | 450 | WP_029309670.1 | hypothetical protein | - |
| I3K84_RS20970 () | 52675..53142 | - | 468 | WP_196996207.1 | stable inheritance protein KleA | - |
| I3K84_RS20975 () | 53196..55172 | - | 1977 | WP_196996208.1 | DUF3560 domain-containing protein | - |
| I3K84_RS20980 () | 56274..56504 | - | 231 | WP_143717923.1 | hypothetical protein | - |
| I3K84_RS20985 () | 56612..56920 | - | 309 | WP_009242150.1 | hypothetical protein | - |
| I3K84_RS20990 () | 56990..57817 | - | 828 | WP_013723334.1 | DUF945 domain-containing protein | - |
| I3K84_RS20995 () | 57906..58343 | - | 438 | WP_143717925.1 | single-stranded DNA-binding protein | - |
| I3K84_RS21000 () | 59114..59845 | - | 732 | WP_143717924.1 | hypothetical protein | - |
| I3K84_RS21005 () | 59865..60482 | - | 618 | WP_013723328.1 | phospholipase D family protein | - |
| I3K84_RS21010 () | 60505..61419 | - | 915 | WP_009242154.1 | DNA cytosine methyltransferase | - |
| I3K84_RS21015 () | 61424..61645 | - | 222 | WP_143717920.1 | hypothetical protein | - |
| I3K84_RS21020 () | 61855..62355 | - | 501 | WP_196996149.1 | hypothetical protein | - |
| I3K84_RS21025 () | 62352..63389 | - | 1038 | WP_196996150.1 | DNA-binding protein | - |
| I3K84_RS21030 () | 63356..64036 | - | 681 | WP_148262999.1 | hypothetical protein | - |
| I3K84_RS21035 () | 64893..65855 | - | 963 | WP_013723326.1 | replication initiator protein A | - |
| I3K84_RS21040 () | 65969..66280 | - | 312 | WP_004637272.1 | putative addiction module antidote protein | - |
| I3K84_RS21045 () | 66518..66919 | - | 402 | WP_196996151.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| I3K84_RS21050 () | 66922..67218 | - | 297 | WP_196996152.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| I3K84_RS21055 () | 67494..68529 | + | 1036 | Protein_85 | hypothetical protein | Relaxase |
| I3K84_RS21060 () | 68560..69774 | + | 1215 | WP_196996211.1 | GIY-YIG nuclease family protein | - |
| I3K84_RS21065 () | 69880..72459 | + | 2580 | WP_196996153.1 | putative signaling protein | VF |
| I3K84_RS21070 () | 72604..72966 | - | 363 | Protein_88 | hypothetical protein | - |
| I3K84_RS21075 () | 72963..73289 | - | 327 | WP_196996154.1 | hypothetical protein | - |
| I3K84_RS21080 () | 73313..73708 | - | 396 | WP_196996155.1 | hypothetical protein | - |
| I3K84_RS21085 () | 73705..74064 | - | 360 | WP_196996156.1 | transposase | - |
| I3K84_RS21090 () | 74079..74414 | - | 336 | WP_196996157.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| I3K84_RS21095 () | 74395..74772 | - | 378 | WP_196996158.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| I3K84_RS21100 () | 74964..75554 | + | 591 | WP_196996159.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| I3K84_RS21105 () | 75559..78519 | + | 2961 | WP_196996160.1 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| I3K84_RS21110 () | 78539..78772 | - | 234 | Protein_96 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| I3K84_RS21115 () | 78840..79220 | - | 381 | WP_004637276.1 | hypothetical protein | - |
| I3K84_RS21120 () | 79301..80593 | - | 1293 | WP_013723325.1 | ParB/RepB/Spo0J family partition protein | - |
| I3K84_RS21125 () | 80606..81388 | - | 783 | WP_196996161.1 | AAA family ATPase | - |
| I3K84_RS21130 () | 81417..81836 | - | 420 | WP_011798667.1 | hypothetical protein | - |
| I3K84_RS21135 () | 81992..82978 | - | 987 | WP_196996162.1 | toprim domain-containing protein | - |
| I3K84_RS21140 () | 82982..83359 | - | 378 | WP_196996163.1 | hypothetical protein | - |
| I3K84_RS21145 () | 83370..83642 | - | 273 | WP_196996164.1 | hypothetical protein | - |
| I3K84_RS21150 () | 84038..84859 | - | 822 | WP_008903250.1 | IS21 family transposase ISAisp6 | Transposase |
| I3K84_RS21155 () | 84849..86381 | - | 1533 | WP_011804189.1 | IS21 family transposase ISAisp6 | Transposase |
| I3K84_RS21160 () | 86476..86718 | - | 243 | WP_196996165.1 | DUF2281 domain-containing protein | - |
| I3K84_RS21165 () | 86843..87361 | + | 519 | WP_196996166.1 | transcription/translation regulatory transformer protein RfaH | - |
| I3K84_RS21170 () | 87496..87816 | - | 321 | WP_196996167.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| I3K84_RS21175 () | 87818..88174 | - | 357 | WP_196996168.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| I3K84_RS21180 () | 88467..89657 | - | 1191 | WP_196996169.1 | glycosyltransferase family 4 protein | - |
| I3K84_RS21185 () | 89668..90804 | - | 1137 | WP_196996170.1 | UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase | VF |
| I3K84_RS21190 () | 90813..91940 | - | 1128 | WP_196996171.1 | UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase | VF |
| I3K84_RS21195 () | 91945..92991 | - | 1047 | WP_196996172.1 | UDP-glucose 4-epimerase | VF |
| I3K84_RS21200 () | 92998..94305 | - | 1308 | WP_196996173.1 | hypothetical protein | - |
| I3K84_RS21205 () | 94366..95013 | - | 648 | WP_196996174.1 | hypothetical protein | - |
| I3K84_RS21210 () | 95450..96802 | - | 1353 | WP_196996175.1 | hypothetical protein | - |
| I3K84_RS21215 () | 96940..97443 | - | 504 | WP_196996176.1 | IS1595 family transposase ISPa72 | Transposase |
| I3K84_RS21220 () | 97736..98728 | - | 993 | WP_196996177.1 | IS5 family transposase ISPsp3 | Transposase |
| I3K84_RS21225 () | 98882..100246 | - | 1365 | WP_196996178.1 | oligosaccharide flippase family protein | - |
| I3K84_RS21230 () | 100259..101350 | - | 1092 | WP_196996179.1 | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | VF |
| I3K84_RS21235 () | 101351..101935 | - | 585 | WP_196996180.1 | UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase | VF |
| I3K84_RS21240 () | 101937..102995 | - | 1059 | WP_196996181.1 | Myo-inositol 2-dehydrogenase | VF |
| I3K84_RS21245 () | 103020..104399 | - | 1380 | WP_196996182.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | VF |
| I3K84_RS21250 () | 104493..106754 | - | 2262 | WP_196996183.1 | Putative tyrosine-protein kinase in cps region | VF |
| I3K84_RS21255 () | 106770..107204 | - | 435 | WP_196996184.1 | Low molecular weight protein-tyrosine-phosphatase Wzb | VF |
| I3K84_RS21260 () | 107201..108346 | - | 1146 | WP_196996185.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|