MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 142771 bp
Accession: NZ_CP065036 Location: 107012..249782 Organism: Pectobacterium parmentieri strain PB20 Replicon: chromosome
Accession: NZ_CP065036 Location: 107012..249782 Organism: Pectobacterium parmentieri strain PB20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PB20LOC_RS00575 () | 102059..103315 | + | 1257 | WP_103808650.1 | integrase arm-type DNA-binding domain-containing protein | - |
| PB20LOC_RS00580 () | 103502..105151 | + | 1650 | WP_103808651.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| PB20LOC_RS00585 () | 105156..106478 | + | 1323 | WP_103808652.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| PB20LOC_RS00590 () | 106459..111540 | + | 5082 | WP_103808653.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| PB20LOC_RS00595 () | 111537..112061 | + | 525 | WP_103808654.1 | hypothetical protein | - |
| PB20LOC_RS00600 () | 112064..113230 | + | 1167 | WP_103808655.1 | DGQHR domain-containing protein | - |
| PB20LOC_RS00605 () | 113268..113621 | - | 354 | WP_103808656.1 | DNA sulfur modification protein DndE | - |
| PB20LOC_RS00610 () | 113621..115621 | - | 2001 | WP_103808657.1 | DNA sulfur modification protein DndD | - |
| PB20LOC_RS00615 () | 115611..117245 | - | 1635 | WP_103808658.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| PB20LOC_RS00620 () | 117242..118327 | - | 1086 | WP_103808659.1 | DNA sulfur modification protein DndB | - |
| PB20LOC_RS00625 () | 118675..119220 | - | 546 | WP_103808660.1 | transcriptional regulator | - |
| PB20LOC_RS00630 () | 119272..120726 | - | 1455 | WP_103808661.1 | 30S ribosomal protein S3 | VF |
| PB20LOC_RS00635 () | 120988..121569 | - | 582 | WP_103808662.1 | hypothetical protein | - |
| PB20LOC_RS00640 () | 121679..121891 | - | 213 | WP_103808663.1 | AlpA family transcriptional regulator | - |
| PB20LOC_RS00645 () | 121979..122581 | - | 603 | WP_103808664.1 | inovirus-type Gp2 protein | - |
| PB20LOC_RS00650 () | 123137..124069 | + | 933 | WP_103808665.1 | hypothetical protein | - |
| PB20LOC_RS00655 () | 124164..125051 | + | 888 | WP_103808666.1 | 50S ribosome-binding GTPase | - |
| PB20LOC_RS00660 () | 125235..125393 | + | 159 | WP_155242703.1 | hypothetical protein | - |
| PB20LOC_RS00665 () | 125540..126373 | + | 834 | WP_103808667.1 | hypothetical protein | - |
| PB20LOC_RS00670 () | 126431..126781 | + | 351 | WP_005974477.1 | hypothetical protein | - |
| PB20LOC_RS00675 () | 126904..127377 | + | 474 | WP_103808668.1 | DNA repair protein RadC | - |
| PB20LOC_RS00680 () | 127417..127752 | + | 336 | WP_103808669.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PB20LOC_RS00685 () | 127811..128131 | + | 321 | WP_103808670.1 | TA system toxin CbtA family protein | Toxin Detail |
| PB20LOC_RS00690 () | 128249..129082 | + | 834 | Protein_136 | DUF4942 domain-containing protein | - |
| PB20LOC_RS00695 () | 129192..129440 | + | 249 | WP_103808671.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| PB20LOC_RS00700 () | 129444..129719 | + | 276 | WP_039517502.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PB20LOC_RS00705 () | 129767..130279 | + | 513 | WP_103808672.1 | AAA family ATPase | - |
| PB20LOC_RS00710 () | 130586..131706 | - | 1121 | Protein_140 | IS3 family transposase ISSen1 | Transposase |
| PB20LOC_RS00715 () | 131778..132946 | + | 1169 | WP_103808047.1 | IS3 family transposase ISLad1 | Transposase |
| PB20LOC_RS00720 () | 132921..133232 | - | 312 | WP_103808046.1 | hypothetical protein | - |
| PB20LOC_RS00725 () | 133714..133976 | - | 263 | Protein_143 | PAAR domain-containing protein | - |
| PB20LOC_RS00730 () | 134016..134765 | - | 750 | WP_103808045.1 | immunity 52 family protein | - |
| PB20LOC_RS00735 () | 135382..135843 | + | 462 | WP_103808044.1 | hypothetical protein | - |
| PB20LOC_RS00740 () | 135902..136429 | + | 528 | WP_025919504.1 | DUF4234 domain-containing protein | - |
| PB20LOC_RS00745 () | 136678..136911 | - | 234 | WP_025919505.1 | hypothetical protein | - |
| PB20LOC_RS00750 () | 137375..137857 | - | 483 | WP_012822239.1 | hypothetical protein | - |
| PB20LOC_RS00755 () | 137868..138572 | - | 705 | WP_012822240.1 | hypothetical protein | - |
| PB20LOC_RS00760 () | 138597..140132 | - | 1536 | WP_014698628.1 | Germination-specific N-acetylmuramoyl-L-alanine amidase | VF |
| PB20LOC_RS00765 () | 140122..141354 | - | 1233 | WP_014698629.1 | Iron-sulfur cluster carrier protein | VF |
| PB20LOC_RS00770 () | 141335..142003 | - | 669 | WP_103808043.1 | Spore germination protein GerD | VF |
| PB20LOC_RS00775 () | 142021..144000 | - | 1980 | WP_012822244.1 | hypothetical protein | VF |
| PB20LOC_RS00780 () | 144010..144990 | - | 981 | WP_103808042.1 | hypothetical protein | - |
| PB20LOC_RS00785 () | 144997..147663 | - | 2667 | WP_103808041.1 | putative virulence factor | - |
| PB20LOC_RS00790 () | 147663..150665 | - | 3003 | WP_014698632.1 | virulence factor SrfB | - |
| PB20LOC_RS00795 () | 150666..152021 | - | 1356 | WP_043988897.1 | hypothetical protein | - |
| PB20LOC_RS00800 () | 152396..153625 | - | 1230 | WP_103808040.1 | VWA domain-containing protein | - |
| PB20LOC_RS00805 () | 154038..155159 | + | 1122 | WP_103808039.1 | cupin domain-containing protein | - |
| PB20LOC_RS00810 () | 155456..156586 | + | 1131 | WP_012822251.1 | lipase | - |
| PB20LOC_RS00815 () | 156650..157828 | - | 1179 | WP_012822252.1 | ABC transporter permease | - |
| PB20LOC_RS00820 () | 157822..158940 | - | 1119 | WP_103808038.1 | ABC transporter permease | - |
| PB20LOC_RS00825 () | 158940..159938 | - | 999 | WP_012822254.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PB20LOC_RS00830 () | 159935..161350 | - | 1416 | WP_033070800.1 | TolC family protein | - |
| PB20LOC_RS00835 () | 161916..163706 | - | 1791 | WP_103808037.1 | ABC transporter ATP-binding protein/permease | - |
| PB20LOC_RS00840 () | 163980..165419 | - | 1440 | WP_005971181.1 | aspartate ammonia-lyase | - |
| PB20LOC_RS00845 () | 165671..166666 | - | 996 | WP_012822257.1 | 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating | VF |
| PB20LOC_RS00850 () | 167320..167655 | - | 336 | WP_014698640.1 | hypothetical protein | - |
| PB20LOC_RS00855 () | 168235..168552 | - | 318 | WP_014698641.1 | helix-turn-helix domain-containing protein | - |
| PB20LOC_RS00860 () | 168654..168998 | - | 345 | WP_014698642.1 | hypothetical protein | - |
| PB20LOC_RS00865 () | 169013..169282 | - | 270 | WP_012822261.1 | hypothetical protein | - |
| PB20LOC_RS00870 () | 169443..171020 | - | 1578 | WP_103808036.1 | ECF RNA polymerase sigma factor SigH | VF |
| PB20LOC_RS00875 () | 171220..172446 | + | 1227 | WP_103808088.1 | RtcB family protein | - |
| PB20LOC_RS00880 () | 172451..173242 | + | 792 | WP_103808035.1 | nucleotidyltransferase domain-containing protein | - |
| PB20LOC_RS00885 () | 173283..174623 | + | 1341 | WP_103808034.1 | hypothetical protein | - |
| PB20LOC_RS00890 () | 174629..175411 | - | 783 | WP_014698646.1 | HNH endonuclease | - |
| PB20LOC_RS00895 () | 175564..176661 | + | 1098 | WP_103808033.1 | DUF1615 domain-containing protein | - |
| PB20LOC_RS00900 () | 176759..178708 | - | 1950 | WP_014698648.1 | D-methionine-binding lipoprotein MetQ | VF |
| PB20LOC_RS00905 () | 179059..181770 | - | 2712 | WP_103808032.1 | Alcohol dehydrogenase | VF |
| PB20LOC_RS00910 () | 182251..183828 | - | 1578 | WP_012822271.1 | hypothetical protein | VF |
| PB20LOC_RS00915 () | 184257..184571 | - | 315 | WP_012822272.1 | L-rhamnose mutarotase | - |
| PB20LOC_RS00920 () | 184656..185480 | - | 825 | WP_103808031.1 | rhamnulose-1-phosphate aldolase | - |
| PB20LOC_RS00925 () | 185485..186747 | - | 1263 | WP_012822274.1 | L-rhamnose isomerase | - |
| PB20LOC_RS00930 () | 186744..188234 | - | 1491 | WP_012822275.1 | rhamnulokinase | - |
| PB20LOC_RS00935 () | 188603..189442 | + | 840 | WP_005971146.1 | HTH-type transcriptional activator RhaS | - |
| PB20LOC_RS00940 () | 189467..190321 | + | 855 | WP_012822276.1 | hypothetical protein | VF |
| PB20LOC_RS00945 () | 190379..190633 | - | 255 | WP_025919527.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| PB20LOC_RS00950 () | 190630..190881 | - | 252 | WP_033070807.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| PB20LOC_RS00955 () | 190956..192644 | - | 1689 | WP_025919529.1 | Dipeptide transport system permease protein DppC | VF |
| PB20LOC_RS00960 () | 192641..193507 | - | 867 | WP_012822280.1 | ABC transporter permease | - |
| PB20LOC_RS00965 () | 193500..194459 | - | 960 | WP_012822281.1 | ABC transporter permease | - |
| PB20LOC_RS00970 () | 194437..196050 | - | 1614 | WP_103808030.1 | ABC transporter substrate-binding protein | - |
| PB20LOC_RS00975 () | 196585..197199 | + | 615 | WP_012822283.1 | YagU family protein | - |
| PB20LOC_RS00980 () | 197499..197963 | - | 465 | WP_033070810.1 | DUF4265 domain-containing protein | - |
| PB20LOC_RS00985 () | 198495..199529 | - | 1035 | WP_012822285.1 | L-rhamnose/proton symporter RhaT | - |
| PB20LOC_RS00990 () | 199857..200363 | + | 507 | WP_012822286.1 | TIGR00645 family protein | - |
| PB20LOC_RS00995 () | 200458..201495 | + | 1038 | WP_012822287.1 | NADP-dependent oxidoreductase | - |
| PB20LOC_RS01000 () | 201583..201710 | + | 128 | Protein_198 | AraC family transcriptional regulator | - |
| PB20LOC_RS01005 () | 201891..202265 | - | 375 | WP_012822289.1 | hypothetical protein | - |
| PB20LOC_RS01010 () | 202571..203059 | - | 489 | WP_033070812.1 | hypothetical protein | - |
| PB20LOC_RS01015 () | 203056..203328 | - | 273 | WP_033070813.1 | hypothetical protein | - |
| PB20LOC_RS01020 () | 203547..203831 | - | 285 | WP_012822291.1 | hypothetical protein | - |
| PB20LOC_RS01025 () | 203831..204178 | - | 348 | WP_033070832.1 | hypothetical protein | - |
| PB20LOC_RS01030 () | 204201..204397 | - | 197 | Protein_204 | RHS repeat-associated core domain-containing protein | - |
| PB20LOC_RS01035 () | 204450..205448 | - | 999 | WP_103808029.1 | hypothetical protein | - |
| PB20LOC_RS01040 () | 205850..206137 | - | 288 | Protein_206 | Molybdenum transport system permease protein ModB | VF |
| PB20LOC_RS01045 () | 206187..206258 | + | 72 | WP_081483335.1 | hypothetical protein | - |
| PB20LOC_RS01050 () | 206342..206611 | - | 270 | WP_103808087.1 | hypothetical protein | - |
| PB20LOC_RS01055 () | 206746..207279 | - | 534 | Protein_209 | RHS domain-containing protein | - |
| PB20LOC_RS01060 () | 207347..207883 | - | 537 | WP_049825590.1 | hypothetical protein | - |
| PB20LOC_RS01065 () | 208282..208458 | - | 177 | Protein_211 | hypothetical protein | VF |
| PB20LOC_RS01070 () | 208507..208929 | - | 423 | WP_103808028.1 | hypothetical protein | - |
| PB20LOC_RS01075 () | 208929..209381 | - | 453 | WP_025919546.1 | hypothetical protein | - |
| PB20LOC_RS01080 () | 209269..209877 | - | 609 | Protein_214 | hypothetical protein | - |
| PB20LOC_RS01085 () | 209933..210199 | - | 267 | WP_025919548.1 | type VI secretion system PAAR protein | - |
| PB20LOC_RS01090 () | 210291..210617 | - | 327 | Protein_216 | hypothetical protein | VF |
| PB20LOC_RS01095 () | 210853..211155 | - | 303 | WP_012822301.1 | DUF2645 family protein | - |
| PB20LOC_RS01100 () | 211169..211477 | - | 309 | WP_025919551.1 | YjeO family protein | - |
| PB20LOC_RS01105 () | 211531..211965 | - | 435 | WP_012822303.1 | hypothetical protein | - |
| PB20LOC_RS01110 () | 212130..212429 | - | 300 | WP_014698666.1 | YjeO family protein | - |
| PB20LOC_RS01115 () | 213168..214379 | - | 1212 | WP_103808026.1 | FAD-dependent 2-octaprenylphenol hydroxylase | - |
| PB20LOC_RS01120 () | 214409..215587 | - | 1179 | WP_103808025.1 | 2-octaprenyl-6-methoxyphenyl hydroxylase | - |
| PB20LOC_RS01125 () | 215613..216938 | - | 1326 | WP_103808024.1 | Xaa-Pro aminopeptidase | - |
| PB20LOC_RS01130 () | 217000..217587 | - | 588 | WP_012822308.1 | YecA family protein | - |
| PB20LOC_RS01135 () | 217780..218109 | + | 330 | WP_005971092.1 | cell division protein ZapA | - |
| PB20LOC_RS01145 () | 218408..219049 | + | 642 | WP_033071930.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| PB20LOC_RS01150 () | 219046..220299 | - | 1254 | WP_012822310.1 | multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR | - |
| PB20LOC_RS01155 () | 220431..221813 | - | 1383 | WP_005971086.1 | DNA repair protein RadA | - |
| PB20LOC_RS01160 () | 221831..222808 | - | 978 | WP_012822311.1 | phosphoserine phosphatase | - |
| PB20LOC_RS01165 () | 222965..223657 | + | 693 | WP_014698672.1 | YtjB family periplasmic protein | - |
| PB20LOC_RS01170 () | 223863..224174 | + | 312 | WP_012822313.1 | helix-turn-helix transcriptional regulator | - |
| PB20LOC_RS01175 () | 224167..225381 | + | 1215 | WP_014698673.1 | hypothetical protein | VF |
| PB20LOC_RS01180 () | 225662..227251 | + | 1590 | WP_012822315.1 | peptide chain release factor 3 | - |
| PB20LOC_RS01185 () | 227775..228383 | + | 609 | WP_012822316.1 | molecular chaperone OsmY | - |
| PB20LOC_RS01190 () | 228535..228696 | + | 162 | WP_003019081.1 | DUF1328 domain-containing protein | - |
| PB20LOC_RS01195 () | 228824..229012 | + | 189 | WP_012822317.1 | stress response protein | - |
| PB20LOC_RS01200 () | 229112..229909 | + | 798 | WP_012822318.1 | metal-dependent hydrolase | - |
| PB20LOC_RS01205 () | 230326..231603 | + | 1278 | WP_012822319.1 | NupC/NupG family nucleoside CNT transporter | - |
| PB20LOC_RS01210 () | 231752..232468 | + | 717 | WP_012822320.1 | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YwtE | VF |
| PB20LOC_RS01215 () | 232518..234437 | - | 1920 | WP_181021263.1 | hypothetical protein | VF |
| PB20LOC_RS01220 () | 234608..235045 | - | 438 | WP_012822322.1 | MFS transporter | - |
| PB20LOC_RS01225 () | 235377..236573 | + | 1197 | WP_103808023.1 | hypothetical protein | VF |
| PB20LOC_RS01230 () | 236570..238198 | + | 1629 | WP_103808022.1 | 4-hydroxyphenylpyruvate dioxygenase | VF |
| PB20LOC_RS01235 () | 238338..239123 | + | 786 | WP_103808021.1 | Homogentisate 1,2-dioxygenase | VF |
| PB20LOC_RS01240 () | 239204..240712 | - | 1509 | WP_012822327.1 | TolC family protein | - |
| PB20LOC_RS01245 () | 240815..249277 | - | 8463 | WP_196398871.1 | putative Ig domain-containing protein | - |
| PB20LOC_RS01250 () | 249634..250446 | - | 813 | WP_049825585.1 | tail fiber protein | - |
| PB20LOC_RS01255 () | 250720..252825 | - | 2106 | WP_103807832.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| PB20LOC_RS01260 () | 252822..254150 | - | 1329 | WP_014698685.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|