MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 64981 bp
Accession: NZ_CP064837 Location: 1..64981 Organism: Lactococcus lactis subsp. lactis strain DRC3 Replicon: plasmid pDRC3B
Accession: NZ_CP064837 Location: 1..64981 Organism: Lactococcus lactis subsp. lactis strain DRC3 Replicon: plasmid pDRC3B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLDRC3_RS12665 (LLDRC3_pB01) | 1..1197 | + | 1197 | WP_012477784.1 | replication initiator protein A | - |
| LLDRC3_RS12670 | 1252..1401 | - | 150 | WP_209599541.1 | hypothetical protein | - |
| LLDRC3_RS12675 (LLDRC3_pB02) | 1501..1704 | + | 204 | WP_181409260.1 | hypothetical protein | - |
| LLDRC3_RS12680 (LLDRC3_pB03) | 1970..3487 | - | 1518 | WP_012477783.1 | hypothetical protein | Relaxase |
| LLDRC3_RS12685 (LLDRC3_pB04) | 3490..3861 | - | 372 | WP_012477782.1 | hypothetical protein | Relaxase |
| LLDRC3_RS12690 (LLDRC3_pB05) | 4070..4384 | - | 315 | WP_012477781.1 | hypothetical protein | - |
| LLDRC3_RS12695 (LLDRC3_pB06) | 4381..5457 | - | 1077 | WP_012477780.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| LLDRC3_RS12700 (LLDRC3_pB07) | 5557..6798 | - | 1242 | WP_012477779.1 | hypothetical protein | - |
| LLDRC3_RS12705 (LLDRC3_pB08) | 6902..7129 | - | 228 | WP_012477778.1 | hypothetical protein | - |
| LLDRC3_RS12710 (LLDRC3_pB09) | 7126..7473 | - | 348 | WP_218976155.1 | thioredoxin | - |
| LLDRC3_RS12715 (LLDRC3_pB10) | 7454..8044 | - | 591 | WP_012477776.1 | hypothetical protein | - |
| LLDRC3_RS12720 (LLDRC3_pB11) | 8034..9338 | - | 1305 | WP_209599542.1 | CHAP domain-containing protein | - |
| LLDRC3_RS12725 (LLDRC3_pB12) | 9896..12208 | - | 2313 | WP_245189793.1 | conjugation protein TraE | - |
| LLDRC3_RS12730 (LLDRC3_pB13) | 12225..12593 | - | 369 | WP_012477772.1 | PrgI family protein | - |
| LLDRC3_RS12735 (LLDRC3_pB14) | 12596..13336 | - | 741 | WP_012477771.1 | hypothetical protein | - |
| LLDRC3_RS12740 (LLDRC3_pB15) | 13362..13775 | - | 414 | WP_012477770.1 | hypothetical protein | - |
| LLDRC3_RS12745 (LLDRC3_pB16) | 13873..14148 | - | 276 | WP_012477769.1 | hypothetical protein | - |
| LLDRC3_RS12750 (LLDRC3_pB17) | 14163..15998 | - | 1836 | WP_012477768.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LLDRC3_RS12755 (LLDRC3_pB18) | 16013..16504 | - | 492 | WP_012477767.1 | hypothetical protein | - |
| LLDRC3_RS12760 (LLDRC3_pB19) | 16501..16902 | - | 402 | WP_143468759.1 | hypothetical protein | - |
| LLDRC3_RS12765 (LLDRC3_pB20) | 16999..17277 | - | 279 | WP_012477765.1 | hypothetical protein | - |
| LLDRC3_RS12770 (LLDRC3_pB21) | 17597..17814 | - | 218 | Protein_21 | transposase | - |
| LLDRC3_RS13600 | 17813..17899 | + | 87 | Protein_22 | bacteriocin | - |
| LLDRC3_RS12775 (LLDRC3_pB22) | 18030..18230 | + | 201 | WP_003132324.1 | cold shock domain-containing protein | - |
| LLDRC3_RS12780 (LLDRC3_pB23) | 18507..18707 | + | 201 | WP_011669084.1 | cold-shock protein | - |
| LLDRC3_RS12785 | 18958..19092 | - | 135 | Protein_25 | helix-turn-helix domain-containing protein | - |
| LLDRC3_RS12790 (LLDRC3_pB24) | 19313..19672 | + | 360 | WP_003726380.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LLDRC3_RS12795 (LLDRC3_pB25) | 19669..21786 | + | 2118 | WP_012477764.1 | heavy metal translocating P-type ATPase | - |
| LLDRC3_RS12800 (LLDRC3_pB26) | 21880..22521 | - | 642 | WP_238834589.1 | IS6 family transposase IS1297 | Transposase |
| LLDRC3_RS12805 (LLDRC3_pB27) | 22557..23237 | - | 681 | WP_012477762.1 | zinc-ribbon domain-containing protein | - |
| LLDRC3_RS13605 (LLDRC3_pB28) | 23454..24317 | - | 864 | WP_012477761.1 | hypothetical protein | - |
| LLDRC3_RS12815 (LLDRC3_pB29) | 24327..25184 | - | 858 | WP_012477760.1 | zinc ribbon domain-containing protein | - |
| LLDRC3_RS12820 (LLDRC3_pB30) | 25396..26304 | + | 909 | WP_012477759.1 | WYL domain-containing protein | - |
| LLDRC3_RS12825 (LLDRC3_pB31) | 26294..27514 | + | 1221 | WP_012477758.1 | hypothetical protein | - |
| LLDRC3_RS12830 (LLDRC3_pB32) | 27523..28983 | + | 1461 | WP_012477757.1 | Elongation factor Tu | VF |
| LLDRC3_RS12835 | 29758..29898 | - | 141 | WP_003132136.1 | hypothetical protein | - |
| LLDRC3_RS12840 (LLDRC3_pB33) | 30109..30954 | - | 846 | WP_012477756.1 | aldo/keto reductase | - |
| LLDRC3_RS12845 (LLDRC3_pB34) | 31096..31604 | - | 509 | Protein_37 | type I restriction endonuclease | - |
| LLDRC3_RS12850 (LLDRC3_pB35) | 31787..32200 | + | 414 | WP_012477755.1 | IS3 family transposase IS1223 | Transposase |
| LLDRC3_RS12855 (LLDRC3_pB36) | 32301..34568 | - | 2268 | WP_012477754.1 | excinuclease ABC subunit UvrA | - |
| LLDRC3_RS12860 (LLDRC3_pB37) | 34777..35019 | + | 243 | WP_012477753.1 | IS3 family transposase ISRgn1 | Transposase |
| LLDRC3_RS12865 (LLDRC3_pB38) | 35432..35869 | + | 438 | WP_012477752.1 | IS3 family transposase IS1520 | Transposase |
| LLDRC3_RS12870 (LLDRC3_pB39) | 36116..36619 | - | 504 | WP_012477751.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| LLDRC3_RS12875 (LLDRC3_pB40) | 36890..37471 | + | 582 | WP_012477750.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LLDRC3_RS12880 (LLDRC3_pB41) | 37824..38687 | + | 864 | WP_012477749.1 | AbiEi | Antitoxin Detail |
| LLDRC3_RS12885 (LLDRC3_pB42) | 38684..39580 | + | 897 | WP_012477748.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| LLDRC3_RS12890 (LLDRC3_pB43) | 39744..40769 | - | 1026 | WP_012477747.1 | recombinase RecA | - |
| LLDRC3_RS12895 (LLDRC3_pB44) | 40782..41177 | - | 396 | WP_181409264.1 | hypothetical protein | - |
| LLDRC3_RS12900 (LLDRC3_pB45) | 41174..42640 | - | 1467 | WP_012477746.1 | Y-family DNA polymerase | - |
| LLDRC3_RS12905 (LLDRC3_pB46) | 42922..43950 | + | 1029 | WP_012477745.1 | Abi family protein | - |
| LLDRC3_RS12910 (LLDRC3_pB47) | 44618..45472 | + | 855 | WP_012477743.1 | hypothetical protein | - |
| LLDRC3_RS12915 (LLDRC3_pB48) | 45611..45949 | + | 339 | WP_012477742.1 | bacteriocin immunity protein | - |
| LLDRC3_RS12920 (LLDRC3_pB50) | 46312..46911 | + | 600 | WP_012477741.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| LLDRC3_RS12925 (LLDRC3_pB51) | 46919..47488 | + | 570 | WP_012477740.1 | hypothetical protein | - |
| LLDRC3_RS12930 (LLDRC3_pB52) | 47650..50190 | - | 2541 | WP_012477739.1 | ATP-binding protein | - |
| LLDRC3_RS12935 (LLDRC3_pB53) | 50237..51520 | - | 1284 | WP_012477738.1 | DUF2130 domain-containing protein | - |
| LLDRC3_RS12940 (LLDRC3_pB54) | 51925..53058 | + | 1134 | WP_012477737.1 | hypothetical protein | - |
| LLDRC3_RS12945 (LLDRC3_pB55) | 53159..53839 | - | 681 | WP_209599539.1 | IS6 family transposase IS1297 | Transposase |
| LLDRC3_RS12950 (LLDRC3_pB56) | 54441..55838 | + | 1398 | WP_012477735.1 | DNA cytosine methyltransferase | - |
| LLDRC3_RS12955 (LLDRC3_pB57) | 55849..56988 | + | 1140 | WP_012477734.1 | DNA cytosine methyltransferase | - |
| LLDRC3_RS12960 (LLDRC3_pB58) | 57001..58758 | + | 1758 | WP_012477733.1 | AAA family ATPase | - |
| LLDRC3_RS12965 (LLDRC3_pB59) | 58770..60014 | + | 1245 | WP_012477732.1 | LlaJI family restriction endonuclease | - |
| LLDRC3_RS12970 | 60019..60195 | - | 177 | Protein_62 | IS982 family transposase | - |
| LLDRC3_RS12975 (LLDRC3_pB60) | 60358..61314 | + | 957 | WP_209599540.1 | S41 family peptidase | - |
| LLDRC3_RS12980 (LLDRC3_pB61) | 61383..62051 | - | 669 | WP_012477730.1 | type II CAAX endopeptidase family protein | - |
| LLDRC3_RS12985 (LLDRC3_pB63) | 62679..63134 | - | 456 | Protein_65 | IS3 family transposase IS981 | Transposase |
| LLDRC3_RS12990 (LLDRC3_pB64) | 63384..63683 | - | 300 | WP_012477786.1 | hypothetical protein | - |
| LLDRC3_RS12995 (LLDRC3_pB65) | 63702..64550 | - | 849 | WP_012477785.1 | ParA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Lactococcus lactis | Non-Mobilizable plasmid | TA6320, TA22930 | NC_010901 | 1..64980 | 0 |