MGE detailed information
MGE type: Conjugative plasmid MGE length: 109586 bp
Accession: NZ_CP062866 Location: 1..109586 Organism: Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 Replicon: plasmid unnamed476
Accession: NZ_CP062866 Location: 1..109586 Organism: Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 Replicon: plasmid unnamed476
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP90_RS22880 () | 46..1077 | + | 1032 | WP_000907870.1 | replication initiation protein | - |
| IMP90_RS22885 () | 1773..1985 | + | 213 | WP_195706873.1 | hypothetical protein | - |
| IMP90_RS22890 () | 2100..3308 | - | 1209 | WP_000198533.1 | IS91 family transposase ISSbo1 | Transposase |
| IMP90_RS22895 () | 3289..3561 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| IMP90_RS22900 () | 3638..6052 | - | 2415 | Protein_4 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| IMP90_RS22905 () | 6056..6616 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| IMP90_RS22910 () | 6792..7142 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| IMP90_RS22915 () | 7345..8358 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| IMP90_RS22920 () | 8516..8989 | + | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| IMP90_RS22925 () | 9120..9908 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| IMP90_RS22930 () | 10110..10814 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IMP90_RS22935 () | 10867..11622 | + | 756 | Protein_11 | IS110 family transposase IS5075 | Transposase |
| IMP90_RS22940 () | 11804..11980 | - | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| IMP90_RS22945 () | 12310..13125 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| IMP90_RS22950 () | 13212..13454 | + | 243 | Protein_14 | phosphoglucosamine mutase | - |
| IMP90_RS22955 () | 13408..13659 | - | 252 | WP_001445143.1 | hypothetical protein | - |
| IMP90_RS22960 () | 13690..14826 | - | 1137 | WP_023140202.1 | IS91 family transposase ISVsa3 | Transposase |
| IMP90_RS22965 () | 15193..15462 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| IMP90_RS22970 () | 15459..15740 | + | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IMP90_RS22975 () | 15780..16628 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| IMP90_RS22980 () | 16745..17218 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| IMP90_RS22985 () | 17695..17961 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| IMP90_RS22990 () | 17961..18455 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| IMP90_RS22995 () | 18511..19113 | - | 603 | WP_000517695.1 | hypothetical protein | - |
| IMP90_RS23000 () | 19467..20813 | + | 1347 | WP_001132032.1 | hypothetical protein | - |
| IMP90_RS23005 () | 21092..22972 | + | 1881 | WP_001283341.1 | colicin 1B | - |
| IMP90_RS23010 () | 22990..23337 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| IMP90_RS23015 () | 23456..23804 | + | 349 | Protein_27 | hypothetical protein | - |
| IMP90_RS23020 () | 23824..24414 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| IMP90_RS23025 () | 24414..24671 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| IMP90_RS23030 () | 25022..26023 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| IMP90_RS23035 () | 26199..26543 | - | 345 | WP_025653526.1 | hypothetical protein | - |
| IMP90_RS23040 () | 27042..27296 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| IMP90_RS23045 () | 27341..28267 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| IMP90_RS23050 () | 28799..29212 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| IMP90_RS23055 () | 29214..29993 | + | 780 | WP_021537353.1 | site-specific integrase | - |
| IMP90_RS23060 () | 30173..30817 | + | 645 | WP_001144036.1 | ParA family protein | - |
| IMP90_RS23065 () | 30904..31212 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| IMP90_RS23070 () | 31626..32606 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| IMP90_RS23075 () | 32599..33015 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| IMP90_RS23080 () | 33017..34291 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| IMP90_RS23085 () | 34291..34728 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| IMP90_RS23090 () | 34725..34973 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| IMP90_RS23095 () | 35391..36293 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| IMP90_RS23100 () | 36290..36601 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| IMP90_RS23105 () | 36678..37361 | + | 684 | WP_000086178.1 | DNA methylase | - |
| IMP90_RS23110 () | 37362..37583 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| IMP90_RS23115 () | 37595..38029 | + | 435 | WP_000274403.1 | DUF1380 family protein | - |
| IMP90_RS23120 () | 38080..38850 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| IMP90_RS23125 () | 39391..39693 | + | 303 | WP_072132163.1 | antirestriction protein | - |
| IMP90_RS23130 () | 39740..40162 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| IMP90_RS23135 () | 40159..40350 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| IMP90_RS23140 () | 40683..40751 | - | 69 | Protein_52 | pilus protein | - |
| IMP90_RS23145 () | 40798..40999 | - | 202 | Protein_53 | hypothetical protein | - |
| IMP90_RS23150 () | 41120..41647 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| IMP90_RS23155 () | 41705..41938 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| IMP90_RS23160 () | 41997..43955 | + | 1959 | WP_021265661.1 | ParB/RepB/Spo0J family partition protein | - |
| IMP90_RS23165 () | 44010..44444 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| IMP90_RS23170 () | 44441..45160 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| IMP90_RS23175 () | 45157..45753 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| IMP90_RS23180 () | 46216..46716 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| IMP90_RS23185 () | 47445..47879 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| IMP90_RS23190 () | 47971..48237 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| IMP90_RS23195 () | 48302..49243 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| IMP90_RS23200 () | 49305..49475 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| IMP90_RS23205 () | 49506..49757 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| IMP90_RS23210 () | 49791..49988 | - | 198 | WP_001412266.1 | hypothetical protein | - |
| IMP90_RS23215 () | 50337..51185 | + | 849 | WP_025653527.1 | DUF4942 domain-containing protein | - |
| IMP90_RS23220 () | 51270..51605 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| IMP90_RS23225 () | 51839..52171 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| IMP90_RS23230 () | 52182..54881 | + | 2700 | WP_024143648.1 | Protein TraI | Relaxase |
| IMP90_RS23235 () | 54918..57209 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| IMP90_RS23240 () | 57202..58272 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| IMP90_RS23245 () | 58291..59499 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 59679..59736 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59679..59736 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59679..59736 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59679..59736 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| IMP90_RS23250 () | 59791..59943 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| IMP90_RS23255 () | 60015..60266 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| IMP90_RS23260 () | 60925..61101 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| IMP90_RS23265 () | 61493..61702 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| IMP90_RS23270 () | 61774..62424 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| IMP90_RS23275 () | 62498..64666 | - | 2169 | WP_021537350.1 | DotA/TraY family protein | - |
| IMP90_RS23280 () | 64763..65347 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| IMP90_RS23285 () | 65376..66578 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| IMP90_RS23290 () | 66545..67159 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| IMP90_RS23295 () | 67159..70203 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| IMP90_RS23300 () | 70293..71093 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| IMP90_RS23305 () | 71077..71265 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| IMP90_RS23310 () | 71329..71733 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| IMP90_RS23315 () | 71784..72311 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| IMP90_RS23320 () | 72311..73015 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| IMP90_RS23325 () | 73015..74304 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| IMP90_RS23330 () | 74307..75290 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| IMP90_RS23335 () | 75301..75993 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| IMP90_RS23340 () | 75990..76337 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| IMP90_RS23345 () | 76355..80122 | - | 3768 | WP_001141527.1 | DNA primase | - |
| IMP90_RS23350 () | 80211..80762 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| IMP90_RS23355 () | 80777..81067 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| IMP90_RS23360 () | 81064..82212 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| IMP90_RS23365 () | 82209..83027 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| IMP90_RS23370 () | 83024..83482 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| IMP90_RS23375 () | 83877..84461 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| IMP90_RS23380 () | 84521..85723 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| IMP90_RS23385 () | 85808..86632 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| IMP90_RS23390 () | 86783..87937 | - | 1155 | WP_001139957.1 | integrase | - |
| IMP90_RS23395 () | 88731..88946 | + | 216 | Protein_103 | IS1380 family transposase ISEcp1 | Transposase |
| IMP90_RS23400 () | 88963..89660 | - | 698 | Protein_104 | IS1 family transposase | - |
| IMP90_RS23405 () | 89865..90827 | + | 963 | WP_195686648.1 | IS5 family transposase ISKpn26 | Transposase |
| IMP90_RS23410 () | 91206..92081 | + | 876 | WP_013188473.1 | Beta-lactamase CTX-M-1 | ARG |
| IMP90_RS23415 () | 92128..92460 | - | 333 | WP_064754192.1 | WbuC family cupin fold metalloprotein | - |
| IMP90_RS23420 () | 92981..93178 | + | 198 | WP_032159596.1 | hypothetical protein | - |
| IMP90_RS23425 () | 93175..94599 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| IMP90_RS23430 () | 94599..95255 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| IMP90_RS23435 () | 95240..95800 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| IMP90_RS23440 () | 95810..96424 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| IMP90_RS23445 () | 96442..97539 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| IMP90_RS23450 () | 97552..99105 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| IMP90_RS23455 () | 99116..99568 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| IMP90_RS23460 () | 99555..100850 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| IMP90_RS23465 () | 100843..102525 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| IMP90_RS23470 () | 102539..102976 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| IMP90_RS23475 () | 102976..104043 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| IMP90_RS23480 () | 104667..104963 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| IMP90_RS23485 () | 105139..105393 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| IMP90_RS23490 () | 105555..106106 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| IMP90_RS23495 () | 106279..106962 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| IMP90_RS23500 () | 107216..107749 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| IMP90_RS23505 () | 108191..108478 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| IMP90_RS23510 () | 108396..108659 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA6370, TA30448 | NC_023329 | 1..104399 | 0.007 |