MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 142772 bp
Accession: NZ_CP062254 Location: 539323..682094 Organism: Pectobacterium parmentieri strain QK-5 Replicon: chromosome
Accession: NZ_CP062254 Location: 539323..682094 Organism: Pectobacterium parmentieri strain QK-5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IG623_RS02635 () | 534370..535626 | + | 1257 | WP_103808650.1 | integrase arm-type DNA-binding domain-containing protein | - |
| IG623_RS02640 () | 535813..537462 | + | 1650 | WP_103808651.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| IG623_RS02645 () | 537467..538789 | + | 1323 | WP_103808652.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| IG623_RS02650 () | 538770..543851 | + | 5082 | WP_103808653.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| IG623_RS02655 () | 543848..544372 | + | 525 | WP_103808654.1 | hypothetical protein | - |
| IG623_RS02660 () | 544375..545541 | + | 1167 | WP_103808655.1 | DGQHR domain-containing protein | - |
| IG623_RS02665 () | 545579..545932 | - | 354 | WP_103808656.1 | DNA sulfur modification protein DndE | - |
| IG623_RS02670 () | 545932..547932 | - | 2001 | WP_103808657.1 | DNA sulfur modification protein DndD | - |
| IG623_RS02675 () | 547922..549556 | - | 1635 | WP_103808658.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| IG623_RS02680 () | 549553..550638 | - | 1086 | WP_103808659.1 | DNA sulfur modification protein DndB | - |
| IG623_RS02685 () | 550986..551531 | - | 546 | WP_103808660.1 | transcriptional regulator | - |
| IG623_RS02690 () | 551583..553037 | - | 1455 | WP_103808661.1 | Flagellin | VF |
| IG623_RS02695 () | 553299..553880 | - | 582 | WP_103808662.1 | hypothetical protein | - |
| IG623_RS02700 () | 553990..554202 | - | 213 | WP_103808663.1 | AlpA family transcriptional regulator | - |
| IG623_RS02705 () | 554290..554892 | - | 603 | WP_103808664.1 | inovirus-type Gp2 protein | - |
| IG623_RS02710 () | 555448..556380 | + | 933 | WP_103808665.1 | hypothetical protein | - |
| IG623_RS02715 () | 556475..557362 | + | 888 | WP_103808666.1 | 50S ribosome-binding GTPase | - |
| IG623_RS02720 () | 557546..557704 | + | 159 | WP_155242703.1 | hypothetical protein | - |
| IG623_RS02725 () | 557851..558684 | + | 834 | WP_103808667.1 | hypothetical protein | - |
| IG623_RS02730 () | 558742..559092 | + | 351 | WP_005974477.1 | hypothetical protein | - |
| IG623_RS02735 () | 559215..559688 | + | 474 | WP_103808668.1 | DNA repair protein RadC | - |
| IG623_RS02740 () | 559728..560063 | + | 336 | WP_103808669.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| IG623_RS02745 () | 560122..560442 | + | 321 | WP_103808670.1 | TA system toxin CbtA family protein | Toxin Detail |
| IG623_RS02750 () | 560560..561393 | + | 834 | Protein_535 | DUF4942 domain-containing protein | - |
| IG623_RS02755 () | 561503..561751 | + | 249 | WP_103808671.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| IG623_RS02760 () | 561755..562030 | + | 276 | WP_039517502.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IG623_RS02765 () | 562078..562590 | + | 513 | WP_103808672.1 | AAA family ATPase | - |
| IG623_RS02770 () | 562897..564017 | - | 1121 | Protein_539 | IS3 family transposase ISSen1 | Transposase |
| IG623_RS02775 () | 564089..565257 | + | 1169 | WP_103808047.1 | IS3 family transposase ISLad1 | Transposase |
| IG623_RS02780 () | 565232..565543 | - | 312 | WP_103808046.1 | hypothetical protein | - |
| IG623_RS02785 () | 566025..566287 | - | 263 | Protein_542 | PAAR domain-containing protein | - |
| IG623_RS02790 () | 566327..567076 | - | 750 | WP_103808045.1 | immunity 52 family protein | - |
| IG623_RS02795 () | 567693..568154 | + | 462 | WP_103808044.1 | hypothetical protein | - |
| IG623_RS02800 () | 568213..568740 | + | 528 | WP_025919504.1 | DUF4234 domain-containing protein | - |
| IG623_RS02805 () | 568989..569222 | - | 234 | WP_025919505.1 | hypothetical protein | - |
| IG623_RS02810 () | 569686..570168 | - | 483 | WP_012822239.1 | hypothetical protein | - |
| IG623_RS02815 () | 570179..570883 | - | 705 | WP_012822240.1 | hypothetical protein | - |
| IG623_RS02820 () | 570908..572443 | - | 1536 | WP_014698628.1 | hypothetical protein | VF |
| IG623_RS02825 () | 572433..573665 | - | 1233 | WP_014698629.1 | hypothetical protein | VF |
| IG623_RS02830 () | 573646..574314 | - | 669 | WP_103808043.1 | putative ABC transporter ATP-binding protein YknY | VF |
| IG623_RS02835 () | 574332..576311 | - | 1980 | WP_012822244.1 | hypothetical protein | VF |
| IG623_RS02840 () | 576321..577301 | - | 981 | WP_103808042.1 | hypothetical protein | - |
| IG623_RS02845 () | 577308..579974 | - | 2667 | WP_103808041.1 | putative virulence factor | - |
| IG623_RS02850 () | 579974..582976 | - | 3003 | WP_014698632.1 | virulence factor SrfB | - |
| IG623_RS02855 () | 582977..584332 | - | 1356 | WP_043988897.1 | hypothetical protein | - |
| IG623_RS02860 () | 584707..585936 | - | 1230 | WP_103808040.1 | VWA domain-containing protein | - |
| IG623_RS02865 () | 586349..587470 | + | 1122 | WP_103808039.1 | cupin domain-containing protein | - |
| IG623_RS02870 () | 587767..588897 | + | 1131 | WP_012822251.1 | lipase | - |
| IG623_RS02875 () | 588961..590139 | - | 1179 | WP_012822252.1 | ABC transporter permease | - |
| IG623_RS02880 () | 590133..591251 | - | 1119 | WP_103808038.1 | ABC transporter permease | - |
| IG623_RS02885 () | 591251..592249 | - | 999 | WP_012822254.1 | efflux RND transporter periplasmic adaptor subunit | - |
| IG623_RS02890 () | 592246..593661 | - | 1416 | WP_033070800.1 | TolC family protein | - |
| IG623_RS02895 () | 594227..596017 | - | 1791 | WP_103808037.1 | ABC transporter ATP-binding protein/permease | - |
| IG623_RS02900 () | 596291..597730 | - | 1440 | WP_005971181.1 | aspartate ammonia-lyase | - |
| IG623_RS02905 () | 597982..598977 | - | 996 | WP_012822257.1 | HTH-type transcriptional regulator GltR | VF |
| IG623_RS02910 () | 599631..599966 | - | 336 | WP_014698640.1 | hypothetical protein | - |
| IG623_RS02915 () | 600546..600863 | - | 318 | WP_014698641.1 | helix-turn-helix domain-containing protein | - |
| IG623_RS02920 () | 600965..601309 | - | 345 | WP_014698642.1 | hypothetical protein | - |
| IG623_RS02925 () | 601324..601593 | - | 270 | WP_012822261.1 | hypothetical protein | - |
| IG623_RS02930 () | 601754..603331 | - | 1578 | WP_103808036.1 | Transcriptional regulatory protein GlrR | VF |
| IG623_RS02935 () | 603531..604757 | + | 1227 | WP_103808088.1 | RtcB family protein | - |
| IG623_RS02940 () | 604762..605553 | + | 792 | WP_103808035.1 | nucleotidyltransferase domain-containing protein | - |
| IG623_RS02945 () | 605594..606934 | + | 1341 | WP_103808034.1 | hypothetical protein | - |
| IG623_RS02950 () | 606940..607722 | - | 783 | WP_014698646.1 | HNH endonuclease | - |
| IG623_RS02955 () | 607875..608972 | + | 1098 | WP_103808033.1 | DUF1615 domain-containing protein | - |
| IG623_RS02960 () | 609070..611019 | - | 1950 | WP_014698648.1 | Methyl-accepting chemotaxis protein II | VF |
| IG623_RS02965 () | 611370..614081 | - | 2712 | WP_103808032.1 | Magnesium-transporting ATPase, P-type 1 | VF |
| IG623_RS02970 () | 614562..616139 | - | 1578 | WP_012822271.1 | Methyl-accepting chemotaxis protein II | VF |
| IG623_RS02975 () | 616568..616882 | - | 315 | WP_012822272.1 | L-rhamnose mutarotase | - |
| IG623_RS02980 () | 616967..617791 | - | 825 | WP_103808031.1 | rhamnulose-1-phosphate aldolase | - |
| IG623_RS02985 () | 617796..619058 | - | 1263 | WP_012822274.1 | L-rhamnose isomerase | - |
| IG623_RS02990 () | 619055..620545 | - | 1491 | WP_012822275.1 | rhamnulokinase | - |
| IG623_RS02995 () | 620914..621753 | + | 840 | WP_005971146.1 | HTH-type transcriptional activator RhaS | - |
| IG623_RS03000 () | 621778..622632 | + | 855 | WP_012822276.1 | HTH-type transcriptional activator RhaR | VF |
| IG623_RS03005 () | 622690..622944 | - | 255 | WP_025919527.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| IG623_RS03010 () | 622941..623192 | - | 252 | WP_033070807.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| IG623_RS03015 () | 623267..624955 | - | 1689 | WP_025919529.1 | Glutathione import ATP-binding protein GsiA | VF |
| IG623_RS03020 () | 624952..625818 | - | 867 | WP_012822280.1 | ABC transporter permease | - |
| IG623_RS03025 () | 625811..626770 | - | 960 | WP_012822281.1 | ABC transporter permease | - |
| IG623_RS03030 () | 626748..628361 | - | 1614 | WP_103808030.1 | ABC transporter substrate-binding protein | - |
| IG623_RS03035 () | 628896..629510 | + | 615 | WP_012822283.1 | YagU family protein | - |
| IG623_RS03040 () | 629810..630274 | - | 465 | WP_033070810.1 | DUF4265 domain-containing protein | - |
| IG623_RS03045 () | 630806..631840 | - | 1035 | WP_012822285.1 | L-rhamnose/proton symporter RhaT | - |
| IG623_RS03050 () | 632168..632674 | + | 507 | WP_012822286.1 | TIGR00645 family protein | - |
| IG623_RS03055 () | 632769..633806 | + | 1038 | WP_012822287.1 | NADP-dependent oxidoreductase | - |
| IG623_RS03060 () | 633894..634021 | + | 128 | Protein_597 | AraC family transcriptional regulator | - |
| IG623_RS03065 () | 634202..634576 | - | 375 | WP_012822289.1 | hypothetical protein | - |
| IG623_RS03070 () | 634882..635370 | - | 489 | WP_033070812.1 | hypothetical protein | - |
| IG623_RS03075 () | 635367..635639 | - | 273 | WP_033070813.1 | hypothetical protein | - |
| IG623_RS03080 () | 635858..636142 | - | 285 | WP_012822291.1 | hypothetical protein | - |
| IG623_RS03085 () | 636142..636489 | - | 348 | WP_033070832.1 | hypothetical protein | - |
| IG623_RS03090 () | 636512..636708 | - | 197 | Protein_603 | RHS repeat-associated core domain-containing protein | - |
| IG623_RS03095 () | 636761..637759 | - | 999 | WP_103808029.1 | hypothetical protein | - |
| IG623_RS03100 () | 638161..638448 | - | 288 | Protein_605 | Protein RhsC | VF |
| IG623_RS03105 () | 638498..638569 | + | 72 | WP_081483335.1 | hypothetical protein | - |
| IG623_RS03110 () | 638653..638937 | - | 285 | WP_012822294.1 | hypothetical protein | - |
| IG623_RS03115 () | 639057..639590 | - | 534 | Protein_608 | RHS domain-containing protein | - |
| IG623_RS03120 () | 639658..640194 | - | 537 | WP_049825590.1 | hypothetical protein | - |
| IG623_RS03125 () | 640593..640769 | - | 177 | Protein_610 | Protein RhsC | VF |
| IG623_RS03130 () | 640818..641240 | - | 423 | WP_103808028.1 | hypothetical protein | - |
| IG623_RS03135 () | 641240..641638 | - | 399 | WP_146052167.1 | hypothetical protein | - |
| IG623_RS03140 () | 641580..642188 | - | 609 | Protein_613 | hypothetical protein | - |
| IG623_RS03145 () | 642244..642510 | - | 267 | WP_025919548.1 | type VI secretion system PAAR protein | - |
| IG623_RS03150 () | 642602..642928 | - | 327 | Protein_615 | Major exported protein | VF |
| IG623_RS03155 () | 643164..643466 | - | 303 | WP_012822301.1 | DUF2645 family protein | - |
| IG623_RS03160 () | 643480..643789 | - | 310 | Protein_617 | YjeO family protein | - |
| IG623_RS03165 () | 643843..644277 | - | 435 | WP_012822303.1 | hypothetical protein | - |
| IG623_RS03170 () | 644442..644741 | - | 300 | WP_014698666.1 | YjeO family protein | - |
| IG623_RS03175 () | 645480..646691 | - | 1212 | WP_103808026.1 | FAD-dependent 2-octaprenylphenol hydroxylase | - |
| IG623_RS03180 () | 646721..647899 | - | 1179 | WP_103808025.1 | 2-octaprenyl-6-methoxyphenyl hydroxylase | - |
| IG623_RS03185 () | 647925..649250 | - | 1326 | WP_103808024.1 | Xaa-Pro aminopeptidase | - |
| IG623_RS03190 () | 649312..649899 | - | 588 | WP_012822308.1 | YecA family protein | - |
| IG623_RS03195 () | 650092..650421 | + | 330 | WP_005971092.1 | cell division protein ZapA | - |
| IG623_RS03205 () | 650720..651361 | + | 642 | WP_033071930.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| IG623_RS03210 () | 651358..652611 | - | 1254 | WP_012822310.1 | multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR | - |
| IG623_RS03215 () | 652743..654125 | - | 1383 | WP_005971086.1 | DNA repair protein RadA | - |
| IG623_RS03220 () | 654143..655120 | - | 978 | WP_012822311.1 | phosphoserine phosphatase | - |
| IG623_RS03225 () | 655277..655969 | + | 693 | WP_014698672.1 | YtjB family periplasmic protein | - |
| IG623_RS03230 () | 656175..656486 | + | 312 | WP_012822313.1 | helix-turn-helix transcriptional regulator | - |
| IG623_RS03235 () | 656479..657693 | + | 1215 | WP_014698673.1 | Serine/threonine-protein kinase toxin HipA | VF |
| IG623_RS03240 () | 657974..659563 | + | 1590 | WP_012822315.1 | peptide chain release factor 3 | - |
| IG623_RS03245 () | 660087..660695 | + | 609 | WP_012822316.1 | molecular chaperone OsmY | - |
| IG623_RS03250 () | 660847..661008 | + | 162 | WP_003019081.1 | DUF1328 domain-containing protein | - |
| IG623_RS03255 () | 661136..661324 | + | 189 | WP_012822317.1 | stress response protein | - |
| IG623_RS03260 () | 661424..662221 | + | 798 | WP_012822318.1 | metal-dependent hydrolase | - |
| IG623_RS03265 () | 662638..663915 | + | 1278 | WP_012822319.1 | NupC/NupG family nucleoside CNT transporter | - |
| IG623_RS03270 () | 664064..664780 | + | 717 | WP_012822320.1 | Enterobactin synthase component D | VF |
| IG623_RS03275 () | 664830..666749 | - | 1920 | WP_181021263.1 | Colicin I receptor | VF |
| IG623_RS03280 () | 666920..667357 | - | 438 | WP_012822322.1 | MFS transporter | - |
| IG623_RS03285 () | 667689..668885 | + | 1197 | WP_103808023.1 | Isochorismate synthase EntC | VF |
| IG623_RS03290 () | 668882..670510 | + | 1629 | WP_103808022.1 | Enterobactin synthase component E | VF |
| IG623_RS03295 () | 670650..671435 | + | 786 | WP_103808021.1 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | VF |
| IG623_RS03300 () | 671516..673024 | - | 1509 | WP_012822327.1 | TolC family protein | - |
| IG623_RS03305 () | 673127..681589 | - | 8463 | WP_121301461.1 | putative Ig domain-containing protein | - |
| IG623_RS03310 () | 681946..682758 | - | 813 | WP_049825585.1 | tail fiber protein | - |
| IG623_RS03315 () | 683052..685157 | - | 2106 | WP_121301462.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| IG623_RS03320 () | 685154..686482 | - | 1329 | WP_033070860.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|