MGE detailed information
MGE type: Conjugative plasmid MGE length: 116466 bp
Accession: NZ_CP061207 Location: 1..116466 Organism: Escherichia coli strain DA61218 Replicon: plasmid pDA61218-116
Accession: NZ_CP061207 Location: 1..116466 Organism: Escherichia coli strain DA61218 Replicon: plasmid pDA61218-116
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICI53_RS24255 () | 1..861 | - | 861 | WP_001620095.1 | Beta-lactamase SHV-1 | ARG |
| ICI53_RS24260 () | 1159..1419 | + | 261 | WP_001620096.1 | hypothetical protein | - |
| ICI53_RS24265 () | 1506..1952 | + | 447 | Protein_2 | AAA family ATPase | - |
| ICI53_RS24270 () | 2018..2722 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ICI53_RS24275 () | 2775..3479 | + | 705 | Protein_4 | IS21 family transposase IS1326 | Transposase |
| ICI53_RS24280 () | 3466..4251 | + | 786 | WP_000983249.1 | IS21 family transposase IS1326 | Transposase |
| ICI53_RS24285 () | 4427..4927 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| ICI53_RS24290 () | 5055..5894 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| ICI53_RS24295 () | 5888..6235 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| ICI53_RS24300 () | 6399..7190 | - | 792 | WP_001206316.1 | Streptomycin 3''-adenylyltransferase | ARG |
| ICI53_RS24305 () | 7339..8352 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| ICI53_RS24310 () | 8555..8905 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| ICI53_RS24315 () | 9036..9320 | + | 285 | Protein_12 | recombinase family protein | - |
| ICI53_RS24320 () | 9322..9666 | + | 345 | Protein_13 | MerR family DNA-binding protein | - |
| ICI53_RS24325 () | 9773..10470 | - | 698 | Protein_14 | IS1 family transposase IS1R | Transposase |
| ICI53_RS24330 () | 10499..11809 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| ICI53_RS24335 () | 12094..12495 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| ICI53_RS24340 () | 12428..12685 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| ICI53_RS24345 () | 12778..13431 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| ICI53_RS24350 () | 13529..13669 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| ICI53_RS24355 () | 14370..15227 | - | 858 | WP_001537577.1 | incFII family plasmid replication initiator RepA | - |
| ICI53_RS24360 () | 15220..15294 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| ICI53_RS24365 () | 15528..15785 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| ICI53_RS24370 () | 16070..16219 | - | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 16267..16323 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 16267..16323 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 16267..16323 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 16267..16323 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| ICI53_RS24375 () | 16418..16855 | - | 438 | WP_000872609.1 | hypothetical protein | - |
| ICI53_RS24380 () | 17008..17391 | - | 384 | WP_001109264.1 | hypothetical protein | - |
| ICI53_RS24385 () | 17494..17955 | - | 462 | WP_000760080.1 | thermonuclease family protein | - |
| ICI53_RS24390 () | 18708..18911 | - | 204 | WP_001336517.1 | hypothetical protein | - |
| ICI53_RS24395 () | 19063..19620 | - | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| ICI53_RS24400 () | 19675..20421 | - | 747 | WP_000205709.1 | conjugal transfer pilus acetylase TraX | - |
| ICI53_RS24405 () | 20441..25711 | - | 5271 | WP_001545323.1 | Multifunctional conjugation protein TraI | Relaxase |
| ICI53_RS24410 () | 25711..27981 | - | 2271 | WP_152071730.1 | Coupling protein TraD | VF |
| ICI53_RS24415 () | 28032..28769 | - | 738 | WP_000199901.1 | hypothetical protein | - |
| ICI53_RS24420 () | 28972..29703 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| ICI53_RS24425 () | 29735..30232 | - | 498 | WP_000605862.1 | entry exclusion protein | - |
| ICI53_RS24430 () | 30251..33070 | - | 2820 | WP_001537571.1 | conjugal transfer mating pair stabilization protein TraG | - |
| ICI53_RS24435 () | 33067..34440 | - | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| ICI53_RS24440 () | 34427..34852 | - | 426 | WP_001336804.1 | F-type conjugal transfer protein TrbF | - |
| ICI53_RS24445 () | 34773..35147 | - | 375 | WP_071589688.1 | P-type conjugative transfer protein TrbJ | - |
| ICI53_RS24450 () | 35077..35622 | - | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ICI53_RS24455 () | 35609..35893 | - | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ICI53_RS24460 () | 35974..36234 | + | 261 | WP_000736412.1 | hypothetical protein | - |
| ICI53_RS24465 () | 36290..36631 | - | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| ICI53_RS24470 () | 36645..37388 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ICI53_RS24475 () | 37381..37638 | - | 258 | WP_000864310.1 | conjugal transfer protein TrbE | - |
| ICI53_RS24480 () | 37665..39515 | - | 1851 | WP_000826177.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ICI53_RS24485 () | 39512..39934 | - | 423 | WP_001229309.1 | HNH endonuclease | - |
| ICI53_RS24490 () | 39959..40330 | - | 372 | WP_000174465.1 | hypothetical protein | - |
| ICI53_RS24495 () | 40327..40965 | - | 639 | WP_000087539.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ICI53_RS24500 () | 40992..41510 | - | 519 | WP_000009088.1 | hypothetical protein | - |
| ICI53_RS24505 () | 41573..41881 | - | 309 | WP_000412445.1 | hypothetical protein | - |
| ICI53_RS24510 () | 41908..42900 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| ICI53_RS24515 () | 42897..43529 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| ICI53_RS24520 () | 43526..43912 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| ICI53_RS24525 () | 43909..46539 | - | 2631 | WP_000069771.1 | type IV secretion system protein TraC | - |
| ICI53_RS24530 () | 47204..47677 | - | 474 | WP_000549566.1 | hypothetical protein | - |
| ICI53_RS24535 () | 47670..48083 | - | 414 | WP_000549574.1 | hypothetical protein | - |
| ICI53_RS24540 () | 48076..48297 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| ICI53_RS24545 () | 48432..48947 | - | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ICI53_RS24550 () | 48947..49297 | - | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| ICI53_RS24555 () | 49251..49838 | - | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| ICI53_RS24560 () | 49807..51258 | - | 1452 | WP_000146663.1 | conjugal transfer protein TraB | - |
| ICI53_RS24565 () | 51258..51986 | - | 729 | WP_001230767.1 | type-F conjugative transfer system secretin TraK | - |
| ICI53_RS24570 () | 51973..52539 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| ICI53_RS24575 () | 52561..52872 | - | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| ICI53_RS24580 () | 52887..53246 | - | 360 | WP_001099001.1 | type IV conjugative transfer system pilin TraA | - |
| ICI53_RS24585 () | 53279..53674 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| ICI53_RS24590 () | 53773..54462 | - | 690 | WP_000283387.1 | conjugal transfer transcriptional regulator TraJ | - |
| ICI53_RS24595 () | 54649..55032 | - | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| ICI53_RS24600 () | 55353..55955 | + | 603 | Protein_69 | hypothetical protein | VF |
| ICI53_RS24605 () | 56252..57073 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| ICI53_RS24610 () | 57183..57479 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| ICI53_RS24615 () | 57871..58075 | + | 205 | Protein_72 | pilus protein | - |
| ICI53_RS24620 () | 58376..58534 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 58578..58802 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 58578..58802 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 58578..58802 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 58578..58802 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| ICI53_RS24625 () | 58614..58793 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| ICI53_RS24630 () | 58814..59533 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| ICI53_RS24635 () | 59530..59964 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| ICI53_RS24640 () | 60033..61997 | - | 1965 | WP_001537566.1 | ParB/RepB/Spo0J family partition protein | - |
| ICI53_RS24645 () | 62058..62291 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| ICI53_RS24650 () | 62349..62876 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| ICI53_RS24655 () | 63178..63621 | + | 444 | WP_024187997.1 | hypothetical protein | - |
| ICI53_RS24660 () | 63707..64270 | - | 564 | WP_001309257.1 | class I SAM-dependent methyltransferase | - |
| ICI53_RS24665 () | 64317..65678 | - | 1362 | WP_001537564.1 | DUF3560 domain-containing protein | - |
| ICI53_RS24670 () | 65730..65960 | - | 231 | WP_001537563.1 | hypothetical protein | - |
| ICI53_RS24675 () | 66641..66949 | + | 309 | WP_050576143.1 | hypothetical protein | - |
| ICI53_RS24680 () | 66928..67119 | - | 192 | WP_001027049.1 | hypothetical protein | - |
| ICI53_RS24685 () | 67119..67538 | - | 420 | WP_000271761.1 | DUF1380 family protein | - |
| ICI53_RS24690 () | 67585..67887 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| ICI53_RS24695 () | 68424..69194 | - | 771 | WP_001044390.1 | hypothetical protein | - |
| ICI53_RS24700 () | 69239..69673 | - | 435 | WP_000274451.1 | DUF1380 family protein | - |
| ICI53_RS24705 () | 69687..69908 | - | 222 | WP_001104892.1 | hypothetical protein | - |
| ICI53_RS24710 () | 69909..70592 | - | 684 | WP_000086171.1 | DNA methylase | - |
| ICI53_RS24715 () | 70668..70979 | - | 312 | WP_001309256.1 | hypothetical protein | - |
| ICI53_RS24720 () | 71043..71402 | - | 360 | WP_001336695.1 | DUF1281 domain-containing protein | - |
| ICI53_RS24725 () | 71409..71552 | - | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| ICI53_RS24730 () | 71719..72495 | - | 777 | Protein_95 | hypothetical protein | - |
| ICI53_RS24735 () | 72729..73691 | - | 963 | WP_000756328.1 | ParB/RepB/Spo0J family partition protein | - |
| ICI53_RS24740 () | 73688..74893 | - | 1206 | WP_000817635.1 | Plasmid partition protein A | VF |
| ICI53_RS24745 () | 75651..75902 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| ICI53_RS24750 () | 75899..76186 | + | 288 | WP_001270422.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ICI53_RS24755 () | 76188..76599 | + | 412 | Protein_100 | DDE-type integrase/transposase/recombinase | - |
| ICI53_RS24760 () | 77243..78220 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| ICI53_RS24765 () | 78463..79203 | - | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| ICI53_RS24770 () | 79324..79512 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| ICI53_RS24775 () | 79879..81048 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| ICI53_RS24780 () | 81274..81449 | - | 176 | Protein_105 | IS3 family transposase | - |
| ICI53_RS24785 () | 81895..82167 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| ICI53_RS24790 () | 82692..83128 | - | 437 | Protein_107 | IS3 family transposase IS2 | Transposase |
| ICI53_RS24795 () | 83218..83697 | - | 480 | Protein_108 | IS3 family transposase IS629 | Transposase |
| ICI53_RS24800 () | 83781..85289 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| ICI53_RS24805 () | 85962..86701 | - | 740 | Protein_110 | IS3 family transposase IS629 | Transposase |
| ICI53_RS24810 () | 86803..87063 | + | 261 | WP_000371883.1 | hypothetical protein | - |
| ICI53_RS24815 () | 87060..87569 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| ICI53_RS24820 () | 87589..87936 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| ICI53_RS24825 () | 88065..88283 | + | 219 | WP_001336934.1 | hypothetical protein | - |
| ICI53_RS24830 () | 89853..90539 | + | 687 | Protein_115 | replication initiation protein | - |
| ICI53_RS24835 () | 90871..91746 | + | 876 | WP_001537591.1 | ChaN family lipoprotein | - |
| ICI53_RS24840 () | 91754..92530 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| ICI53_RS24845 () | 92699..94960 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| ICI53_RS24850 () | 95029..96204 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| ICI53_RS24855 () | 96727..97032 | - | 306 | Protein_120 | IS91 family transposase ISSbo1 | Transposase |
| ICI53_RS24860 () | 97058..97635 | + | 578 | Protein_121 | IS3 family transposase IS629 | Transposase |
| ICI53_RS24865 () | 97526..98281 | - | 756 | WP_000065240.1 | IS21 family transposase ISEc10 | Transposase |
| ICI53_RS24870 () | 98278..99777 | - | 1500 | WP_000143800.1 | IS21 family transposase ISEc10 | Transposase |
| ICI53_RS24875 () | 99863..100213 | + | 351 | Protein_124 | IS3 family transposase IS629 | Transposase |
| ICI53_RS24880 () | 100886..102394 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| ICI53_RS24885 () | 102484..102957 | + | 474 | Protein_126 | IS3 family transposase IS629 | Transposase |
| ICI53_RS24890 () | 102960..103529 | - | 570 | WP_001336919.1 | Serine protease EspC | VF |
| ICI53_RS24895 () | 103631..104610 | + | 980 | Protein_128 | IS5 family transposase ISKpn26 | Transposase |
| ICI53_RS24900 () | 104760..105392 | - | 633 | Protein_129 | histidine-type phosphatase | - |
| ICI53_RS24905 () | 105514..105999 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| ICI53_RS24910 () | 106024..106509 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| ICI53_RS24915 () | 106496..107191 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| ICI53_RS24920 () | 107196..108326 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| ICI53_RS24925 () | 108316..109599 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| ICI53_RS24930 () | 109602..110981 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| ICI53_RS24935 () | 111085..111612 | - | 528 | WP_000178050.1 | iron transporter | - |
| ICI53_RS24940 () | 111653..113539 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| ICI53_RS24945 () | 113886..114701 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| ICI53_RS24950 () | 115034..115738 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ICI53_RS24955 () | 115790..116446 | + | 657 | Protein_140 | DeoR/GlpR transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|