MGE detailed information
MGE type: Conjugative plasmid MGE length: 165427 bp
Accession: NZ_CP061188 Location: 1..165427 Organism: Escherichia coli strain LD67-1 Replicon: plasmid pLD67-1-165kb
Accession: NZ_CP061188 Location: 1..165427 Organism: Escherichia coli strain LD67-1 Replicon: plasmid pLD67-1-165kb
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IB283_RS24825 () | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| IB283_RS24830 () | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| IB283_RS24835 () | 2124..2312 | - | 189 | WP_001324033.1 | hypothetical protein | - |
| IB283_RS24840 () | 2686..3588 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| IB283_RS24845 () | 3657..4766 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| IB283_RS24850 () | 5199..6152 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| IB283_RS24855 () | 7425..7583 | - | 159 | WP_001324039.1 | integrase core domain-containing protein | - |
| IB283_RS24860 () | 7767..8966 | + | 1200 | Protein_7 | IS3 family transposase IS629 | Transposase |
| IB283_RS24865 () | 9114..9439 | - | 326 | Protein_8 | IS3 family transposase ISLad1 | Transposase |
| IB283_RS24870 () | 10420..11607 | + | 1188 | WP_188322783.1 | efflux RND transporter periplasmic adaptor subunit | - |
| IB283_RS24875 () | 11604..13544 | + | 1941 | WP_000733250.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| IB283_RS24880 () | 13548..14918 | + | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| IB283_RS24885 () | 15392..15586 | + | 195 | Protein_12 | IS200/IS605 family transposase | - |
| IB283_RS24890 () | 15715..16656 | - | 942 | WP_000974762.1 | hypothetical protein | - |
| IB283_RS24895 () | 16891..18280 | - | 1390 | Protein_14 | ISNCY family transposase ISKpn21 | Transposase |
| IB283_RS24900 () | 18590..18739 | - | 150 | Protein_15 | IS3 family transposase IS2 | Transposase |
| IB283_RS24905 () | 18917..20110 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| IB283_RS24910 () | 21352..22080 | - | 729 | Protein_17 | IS3 family transposase IS2 | Transposase |
| IB283_RS24915 () | 22142..23304 | + | 1163 | WP_088846059.1 | IS3 family transposase ISEc17 | Transposase |
| IB283_RS24920 () | 23321..23886 | - | 566 | Protein_19 | IS3 family transposase IS2 | Transposase |
| IB283_RS24925 () | 24466..24759 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| IB283_RS24930 () | 24817..24992 | - | 176 | Protein_21 | lysis protein | - |
| IB283_RS24935 () | 25570..26669 | + | 1100 | Protein_22 | IS481 family transposase ISKpn28 | Transposase |
| IB283_RS24940 () | 27905..29020 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| IB283_RS24945 () | 29160..32819 | + | 3660 | WP_001389363.1 | Multidrug efflux ATP-binding/permease protein | VF |
| IB283_RS24950 () | 32923..34152 | + | 1230 | WP_000933678.1 | Enterochelin esterase | VF |
| IB283_RS24955 () | 34237..35193 | + | 957 | WP_000271274.1 | Ferri-bacillibactin esterase BesA | VF |
| IB283_RS24960 () | 35238..37415 | - | 2178 | WP_001222185.1 | Ferric enterobactin receptor | VF |
| IB283_RS24965 () | 38281..39315 | - | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| IB283_RS24970 () | 39875..40183 | - | 309 | WP_000377483.1 | hypothetical protein | - |
| IB283_RS24975 () | 40282..40464 | - | 183 | WP_000969988.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IB283_RS24980 () | 40461..40658 | - | 198 | WP_001324224.1 | toxin-antitoxin system protein | Antitoxin Detail |
| IB283_RS24985 () | 41340..42614 | + | 1275 | WP_000489609.1 | HlyD family secretion protein | - |
| IB283_RS24990 () | 42589..44703 | + | 2115 | WP_001183604.1 | peptidase domain-containing ABC transporter | - |
| IB283_RS24995 () | 44873..45184 | - | 312 | WP_001259758.1 | colicin V | - |
| IB283_RS25000 () | 45162..45398 | - | 237 | WP_001323890.1 | colicin V immunity protein | - |
| IB283_RS25005 () | 45559..46336 | + | 778 | Protein_36 | Gfo/Idh/MocA family oxidoreductase | - |
| IB283_RS25010 () | 46338..46607 | + | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| IB283_RS25015 () | 46604..47584 | + | 981 | WP_001017346.1 | NAD(P)-binding domain-containing protein | - |
| IB283_RS25020 () | 47660..48040 | + | 381 | WP_001171523.1 | IS66 family transposase ISEc8 | Transposase |
| IB283_RS25025 () | 48037..48384 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| IB283_RS25030 () | 48434..49971 | + | 1538 | Protein_41 | IS66 family transposase ISEc8 | Transposase |
| IB283_RS25035 () | 50011..50277 | + | 267 | Protein_42 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| IB283_RS25040 () | 50264..50716 | - | 453 | WP_001553770.1 | peptide deformylase | - |
| IB283_RS25045 () | 50825..54958 | - | 4134 | WP_001080137.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| IB283_RS25050 () | 55149..55503 | - | 355 | Protein_45 | helix-turn-helix transcriptional regulator | - |
| IB283_RS25055 () | 55599..55856 | + | 258 | Protein_46 | IS3 family transposase IS911 | Transposase |
| IB283_RS25060 () | 55924..57075 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| IB283_RS25065 () | 57197..57562 | + | 366 | WP_000124098.1 | hypothetical protein | - |
| IB283_RS25070 () | 57562..58677 | + | 1116 | Protein_49 | IS91 family transposase IS91 | Transposase |
| IB283_RS25075 () | 58858..59202 | - | 345 | WP_001553768.1 | hypothetical protein | - |
| IB283_RS25080 () | 60060..61574 | - | 1515 | Protein_51 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| IB283_RS25085 () | 61640..62344 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IB283_RS25090 () | 62792..63805 | - | 1014 | WP_188322784.1 | IS91 family transposase ISAzo26 | Transposase |
| IB283_RS25095 () | 63961..64434 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| IB283_RS25100 () | 64504..65208 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IB283_RS25105 () | 65262..65576 | + | 315 | Protein_56 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| IB283_RS25110 () | 65579..68545 | + | 2967 | WP_001138070.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| IB283_RS25115 () | 68624..69628 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| IB283_RS25120 () | 69810..69986 | - | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| IB283_RS25125 () | 70316..71131 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| IB283_RS25130 () | 71192..71995 | + | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| IB283_RS25135 () | 71995..72831 | + | 837 | WP_000480972.1 | hypothetical protein | ARG |
| IB283_RS25140 () | 73062..73922 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| IB283_RS25145 () | 74105..74662 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| IB283_RS25150 () | 74826..77831 | + | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| IB283_RS25155 () | 77764..78229 | - | 466 | Protein_66 | incFII family plasmid replication initiator RepA | - |
| IB283_RS25160 () | 78222..78704 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| IB283_RS25165 () | 78697..78771 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| IB283_RS25170 () | 79003..79260 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| IB283_RS25175 () | 79544..79750 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 79737..79798 | + | 62 | NuclAT_1 | - | - |
| - () | 79737..79798 | + | 62 | NuclAT_1 | - | - |
| - () | 79737..79798 | + | 62 | NuclAT_1 | - | - |
| - () | 79737..79798 | + | 62 | NuclAT_1 | - | - |
| IB283_RS25180 () | 80054..80128 | - | 75 | Protein_71 | endonuclease | - |
| IB283_RS25185 () | 80374..80586 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| IB283_RS25190 () | 80722..81282 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| IB283_RS25195 () | 81385..82245 | - | 861 | WP_000704513.1 | putative protein YcjY | VF |
| IB283_RS25200 () | 82304..83050 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| IB283_RS25205 () | 83070..88340 | - | 5271 | WP_000986963.1 | Multifunctional conjugation protein TraI | Relaxase |
| IB283_RS25210 () | 88422..88649 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| IB283_RS25215 () | 88649..89047 | + | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| IB283_RS25220 () | 89056..91209 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| IB283_RS25225 () | 91462..92193 | - | 732 | WP_023565183.1 | complement resistance protein TraT | - |
| IB283_RS25230 () | 92225..92722 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| IB283_RS25235 () | 92738..95560 | - | 2823 | WP_001007018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| IB283_RS25240 () | 95557..96930 | - | 1374 | WP_001517790.1 | conjugal transfer protein TraH | - |
| IB283_RS25245 () | 96930..97343 | - | 414 | WP_001324104.1 | F-type conjugal transfer protein TrbF | - |
| IB283_RS25250 () | 97297..97638 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| IB283_RS25255 () | 97568..98113 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| IB283_RS25260 () | 98100..98384 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| IB283_RS25265 () | 98465..98779 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| IB283_RS25270 () | 98781..99128 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| IB283_RS25275 () | 99144..99887 | - | 744 | WP_001030377.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| IB283_RS25280 () | 99880..100137 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| IB283_RS25285 () | 100164..101972 | - | 1809 | WP_000821838.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| IB283_RS25290 () | 101969..102607 | - | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| IB283_RS25295 () | 102616..103608 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| IB283_RS25300 () | 103605..104237 | - | 633 | WP_001203717.1 | type-F conjugative transfer system protein TraW | - |
| IB283_RS25305 () | 104234..104620 | - | 387 | WP_000099691.1 | type-F conjugative transfer system protein TrbI | - |
| IB283_RS25310 () | 104617..107244 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| IB283_RS25315 () | 107404..107625 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| IB283_RS25320 () | 107760..108275 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IB283_RS25325 () | 108272..108523 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| IB283_RS25330 () | 108535..108765 | - | 231 | WP_001442573.1 | conjugal transfer protein TrbD | - |
| IB283_RS25335 () | 108719..109309 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| IB283_RS25340 () | 109299..110726 | - | 1428 | WP_000146684.1 | conjugal transfer protein TraB | - |
| IB283_RS25345 () | 110726..111430 | - | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| IB283_RS25350 () | 111441..112007 | - | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| IB283_RS25355 () | 112029..112340 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| IB283_RS25360 () | 112355..112720 | - | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| IB283_RS25365 () | 112763..112978 | - | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| IB283_RS25370 () | 113114..113761 | - | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| IB283_RS25375 () | 113953..114336 | - | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| IB283_RS25380 () | 114688..115278 | + | 591 | WP_166494936.1 | hypothetical protein | VF |
| IB283_RS25385 () | 115573..116394 | - | 822 | WP_001234475.1 | DUF945 domain-containing protein | - |
| IB283_RS25390 () | 116513..116800 | - | 288 | WP_000107546.1 | hypothetical protein | - |
| IB283_RS25395 () | 116825..117031 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| IB283_RS25400 () | 117101..117460 | + | 360 | Protein_115 | hypothetical protein | - |
| IB283_RS25405 () | 117698..117856 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 117921..118119 | - | 199 | NuclAT_0 | - | - |
| - () | 117921..118119 | - | 199 | NuclAT_0 | - | - |
| - () | 117921..118119 | - | 199 | NuclAT_0 | - | - |
| - () | 117921..118119 | - | 199 | NuclAT_0 | - | - |
| IB283_RS25410 () | 118131..118850 | - | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| IB283_RS25415 () | 118847..119281 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| IB283_RS25420 () | 119336..121294 | - | 1959 | WP_188322782.1 | ParB/RepB/Spo0J family partition protein | - |
| IB283_RS25425 () | 121360..121593 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| IB283_RS25430 () | 121650..122189 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| IB283_RS25435 () | 122507..123016 | + | 510 | WP_071600123.1 | hypothetical protein | - |
| IB283_RS25440 () | 122986..123177 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| IB283_RS25445 () | 123174..123596 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| IB283_RS25450 () | 123643..123945 | - | 303 | WP_072148062.1 | antirestriction protein | - |
| IB283_RS25455 () | 124481..125257 | - | 777 | WP_001005035.1 | hypothetical protein | - |
| IB283_RS25460 () | 125303..125857 | - | 555 | WP_077248347.1 | DUF1380 family protein | - |
| IB283_RS25465 () | 125751..125972 | - | 222 | WP_001104870.1 | hypothetical protein | - |
| IB283_RS25470 () | 125973..126656 | - | 684 | WP_000085939.1 | DNA methylase | - |
| IB283_RS25475 () | 126733..127038 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| IB283_RS25480 () | 127042..127943 | - | 902 | Protein_131 | DUF1281 domain-containing protein | - |
| IB283_RS25485 () | 128681..129652 | - | 972 | WP_000817035.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| IB283_RS25490 () | 129652..130818 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| IB283_RS25495 () | 131406..132161 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| IB283_RS25500 () | 132913..133719 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| IB283_RS25505 () | 133720..134025 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| IB283_RS25510 () | 134027..134245 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| IB283_RS25515 () | 134813..135325 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| IB283_RS25520 () | 135359..136492 | - | 1134 | WP_000545984.1 | DUF3800 domain-containing protein | - |
| IB283_RS25525 () | 136659..137432 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| IB283_RS25530 () | 137445..137945 | - | 501 | WP_000528932.1 | hypothetical protein | - |
| IB283_RS25535 () | 138210..138440 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| IB283_RS25540 () | 138437..138853 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| IB283_RS25545 () | 138898..142692 | - | 3795 | WP_001144731.1 | hypothetical protein | - |
| IB283_RS25550 () | 143073..143303 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| IB283_RS25555 () | 143300..143716 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| IB283_RS25560 () | 143791..145356 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| IB283_RS25565 () | 145341..146363 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| IB283_RS25570 () | 146617..147314 | - | 698 | Protein_149 | IS1 family transposase IS1A | Transposase |
| IB283_RS25575 () | 147694..149895 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| IB283_RS25580 () | 149977..151254 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| IB283_RS25585 () | 151251..152993 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| IB283_RS25590 () | 152993..153940 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| IB283_RS25595 () | 153941..155665 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| IB283_RS25600 () | 155801..156994 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| IB283_RS25605 () | 157374..157754 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| IB283_RS25610 () | 158095..158508 | - | 414 | Protein_157 | phosphopyruvate hydratase | - |
| IB283_RS25615 () | 158997..159854 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| IB283_RS25620 () | 159851..160708 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| IB283_RS25625 () | 160705..161532 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| IB283_RS25630 () | 161532..162446 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| IB283_RS25635 () | 162802..163499 | + | 698 | Protein_162 | IS1 family transposase IS1A | Transposase |
| IB283_RS25640 () | 163679..164192 | - | 514 | Protein_163 | DUF4113 domain-containing protein | - |
| IB283_RS25645 () | 164253..164357 | - | 105 | Protein_164 | AAA family ATPase | - |
| IB283_RS25650 () | 164359..164682 | - | 324 | Protein_165 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|