MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP060708 Location: 1396450..1418124 Organism: Escherichia coli strain MFDpir Replicon: chromosome
Accession: NZ_CP060708 Location: 1396450..1418124 Organism: Escherichia coli strain MFDpir Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9446_RS06830 () | 1393097..1394128 | - | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| H9446_RS06835 () | 1394282..1395298 | + | 1017 | WP_010723085.1 | IS5-like element IS5 family transposase | - |
| H9446_RS06840 () | 1395586..1396398 | - | 813 | Protein_1329 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| H9446_RS06845 () | 1396450..1397685 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| H9446_RS06850 () | 1397687..1397902 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| H9446_RS06855 () | 1397981..1398190 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1398006..1398184 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1398006..1398184 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1398006..1398184 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1398006..1398184 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| H9446_RS06860 () | 1398183..1398377 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| H9446_RS06865 () | 1398434..1399243 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| H9446_RS06870 () | 1399236..1401836 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| H9446_RS06875 () | 1401938..1402213 | - | 276 | WP_000632297.1 | protein RacC | - |
| H9446_RS06880 () | 1402288..1402458 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| H9446_RS06885 () | 1402458..1402679 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| H9446_RS06890 () | 1403121..1403609 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| H9446_RS06895 () | 1403606..1403761 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| H9446_RS06900 () | 1404215..1404691 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| H9446_RS06905 () | 1404815..1405111 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| H9446_RS06910 () | 1405134..1405556 | + | 423 | WP_000693797.1 | phage protein | - |
| H9446_RS06915 () | 1405569..1406426 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| H9446_RS06920 () | 1406433..1407179 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| H9446_RS06925 () | 1407202..1407762 | + | 561 | WP_000450663.1 | DUF1627 domain-containing protein | - |
| H9446_RS06930 () | 1407850..1408035 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| H9446_RS06935 () | 1408232..1409689 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| H9446_RS06940 () | 1409827..1410090 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| H9446_RS06945 () | 1410071..1410430 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| H9446_RS06950 () | 1410904..1411836 | + | 933 | Protein_1351 | phage tail length tape measure family protein | - |
| H9446_RS06955 () | 1411839..1412054 | + | 216 | Protein_1352 | Ail/Lom family outer membrane beta-barrel protein | - |
| H9446_RS06960 () | 1412196..1413176 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| H9446_RS06965 () | 1413246..1413434 | + | 189 | Protein_1354 | Ail/Lom family outer membrane beta-barrel protein | - |
| H9446_RS06970 () | 1413499..1416861 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| H9446_RS06975 () | 1416861..1417436 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| H9446_RS06980 () | 1417534..1418124 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| H9446_RS06985 () | 1418441..1418674 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| H9446_RS06990 () | 1418743..1418856 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| H9446_RS06995 () | 1419196..1419369 | + | 174 | WP_001157926.1 | hypothetical protein | - |
| H9446_RS07000 () | 1419635..1420069 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| H9446_RS07005 () | 1420210..1421343 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |