MGE detailed information
MGE type: Integron MGE length: 48515 bp
Accession: NZ_CP060088 Location: 2004357..2052871 Organism: Vibrio parahaemolyticus strain TJA114 Replicon: chromosome
Accession: NZ_CP060088 Location: 2004357..2052871 Organism: Vibrio parahaemolyticus strain TJA114 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5404_RS16965 () | 2000066..2000990 | - | 925 | Protein_1729 | IS1595 family transposase | - |
| H5404_RS16970 () | 2001488..2001982 | - | 495 | WP_129147797.1 | hypothetical protein | - |
| H5404_RS16975 () | 2001986..2002423 | - | 438 | Protein_1731 | hypothetical protein | - |
| H5404_RS16980 () | 2002678..2003057 | + | 380 | Protein_1732 | IS30 family transposase | - |
| H5404_RS16985 () | 2003435..2003608 | + | 174 | WP_164977343.1 | hypothetical protein | - |
| H5404_RS16990 () | 2003811..2004152 | - | 342 | WP_140219843.1 | hypothetical protein | - |
| H5404_RS16995 () | 2004370..2004459 | - | 90 | WP_079858491.1 | DUF3265 domain-containing protein | - |
| H5404_RS17000 () | 2005451..2005573 | - | 123 | WP_086026910.1 | DUF3265 domain-containing protein | - |
| H5404_RS17005 () | 2005570..2006018 | - | 449 | Protein_1737 | GNAT family N-acetyltransferase | - |
| H5404_RS17010 () | 2006068..2006919 | - | 852 | WP_153645302.1 | IS3 family transposase ISDpr3 | Transposase |
| H5404_RS17015 () | 2007003..2007224 | - | 222 | Protein_1739 | IS3 family transposase ISNisp1 | Transposase |
| H5404_RS17020 () | 2007272..2007397 | - | 126 | WP_140220212.1 | DUF3265 domain-containing protein | - |
| H5404_RS17025 () | 2007474..2007758 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| H5404_RS17030 () | 2007755..2008033 | + | 279 | WP_140220214.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H5404_RS17035 () | 2008062..2008151 | - | 90 | WP_080259156.1 | DUF3265 domain-containing protein | - |
| H5404_RS17040 () | 2008182..2008649 | - | 468 | WP_140220216.1 | hypothetical protein | - |
| H5404_RS17045 () | 2008797..2009303 | - | 507 | WP_140202106.1 | hypothetical protein | - |
| H5404_RS17050 () | 2009332..2009424 | - | 93 | WP_005526637.1 | DUF3265 domain-containing protein | - |
| H5404_RS17055 () | 2009463..2010110 | - | 648 | WP_140220218.1 | PH domain-containing protein | - |
| H5404_RS17060 () | 2010760..2011206 | - | 447 | WP_029817141.1 | Mycothiol acetyltransferase | VF |
| H5404_RS25860 () | 2011233..2011325 | - | 93 | WP_140203955.1 | DUF3265 domain-containing protein | - |
| H5404_RS17070 () | 2011348..2011800 | - | 453 | WP_031780762.1 | hypothetical protein | - |
| H5404_RS17075 () | 2011875..2011991 | - | 117 | WP_079379638.1 | DUF3265 domain-containing protein | - |
| H5404_RS17080 () | 2012004..2012696 | - | 693 | WP_140220224.1 | hypothetical protein | - |
| H5404_RS17085 () | 2012737..2012853 | - | 117 | WP_185215516.1 | DUF3265 domain-containing protein | - |
| H5404_RS17090 () | 2012892..2013404 | + | 513 | WP_153645271.1 | hypothetical protein | - |
| H5404_RS17095 () | 2013535..2014032 | - | 498 | WP_140166733.1 | DinB family protein | - |
| H5404_RS17100 () | 2014210..2015151 | - | 942 | WP_140220243.1 | DUF1848 domain-containing protein | - |
| H5404_RS17105 () | 2015153..2016004 | - | 852 | WP_140220245.1 | hypothetical protein | - |
| H5404_RS17110 () | 2016128..2016649 | - | 522 | WP_140220257.1 | GNAT family N-acetyltransferase | - |
| H5404_RS17115 () | 2016696..2016848 | - | 153 | WP_079858454.1 | DUF3265 domain-containing protein | - |
| H5404_RS17120 () | 2016802..2017293 | - | 492 | WP_080607099.1 | hypothetical protein | - |
| H5404_RS17125 () | 2017343..2018194 | - | 852 | WP_153645302.1 | IS3 family transposase ISDpr3 | Transposase |
| H5404_RS17130 () | 2018278..2018499 | - | 222 | Protein_1762 | IS3 family transposase ISNisp1 | Transposase |
| H5404_RS17135 () | 2018704..2018991 | - | 288 | WP_039485476.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H5404_RS17140 () | 2018988..2019269 | - | 282 | WP_000086647.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| H5404_RS17145 () | 2019459..2019833 | - | 375 | WP_140220247.1 | hypothetical protein | - |
| H5404_RS17150 () | 2019876..2019968 | - | 93 | WP_171359308.1 | DUF3265 domain-containing protein | - |
| H5404_RS17155 () | 2020423..2020500 | - | 78 | WP_074534512.1 | DUF3265 domain-containing protein | - |
| H5404_RS17160 () | 2020534..2020950 | - | 417 | WP_031849395.1 | VOC family protein | - |
| H5404_RS17165 () | 2021016..2021867 | - | 852 | WP_153645302.1 | IS3 family transposase ISDpr3 | Transposase |
| H5404_RS17170 () | 2021951..2022172 | - | 222 | Protein_1770 | IS3 family transposase ISNisp1 | Transposase |
| H5404_RS17175 () | 2022378..2023190 | - | 813 | WP_023623438.1 | hypothetical protein | - |
| H5404_RS17180 () | 2023700..2023792 | - | 93 | WP_080281584.1 | DUF3265 domain-containing protein | - |
| H5404_RS17185 () | 2023807..2024121 | - | 315 | WP_140220237.1 | hypothetical protein | - |
| H5404_RS17190 () | 2024438..2024527 | - | 90 | WP_080372495.1 | DUF3265 domain-containing protein | - |
| H5404_RS17195 () | 2025154..2025582 | - | 429 | WP_197972206.1 | hypothetical protein | - |
| H5404_RS17200 () | 2025611..2025700 | - | 90 | WP_140064799.1 | DUF3265 domain-containing protein | - |
| H5404_RS17205 () | 2025731..2026084 | - | 354 | WP_140220232.1 | hypothetical protein | - |
| H5404_RS17210 () | 2026124..2026252 | - | 129 | WP_103197551.1 | DUF3265 domain-containing protein | - |
| H5404_RS17215 () | 2026243..2026554 | - | 312 | WP_140220230.1 | antibiotic biosynthesis monooxygenase | - |
| H5404_RS17220 () | 2026591..2026668 | - | 78 | WP_140220235.1 | DUF3265 domain-containing protein | - |
| H5404_RS17225 () | 2026795..2027037 | + | 243 | WP_023585842.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| H5404_RS17230 () | 2027044..2027340 | + | 297 | WP_140220228.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H5404_RS17235 () | 2027955..2028047 | - | 93 | WP_079880610.1 | DUF3265 domain-containing protein | - |
| H5404_RS17240 () | 2028070..2029722 | - | 1653 | WP_185215354.1 | TIGR04141 family sporadically distributed protein | - |
| H5404_RS17245 () | 2030014..2030319 | - | 306 | WP_140220241.1 | NIPSNAP family protein | - |
| H5404_RS17250 () | 2030373..2030486 | - | 114 | WP_021448828.1 | DUF3265 domain-containing protein | - |
| H5404_RS17255 () | 2030492..2031118 | - | 627 | WP_140220239.1 | LysE family translocator | - |
| H5404_RS17260 () | 2031267..2031788 | - | 522 | WP_140220257.1 | GNAT family N-acetyltransferase | - |
| H5404_RS17265 () | 2031835..2031924 | - | 90 | WP_079866497.1 | DUF3265 domain-containing protein | - |
| H5404_RS17270 () | 2032041..2033009 | + | 969 | WP_140220249.1 | IS30 family transposase ISVa6 | Transposase |
| H5404_RS17275 () | 2033083..2033595 | + | 513 | WP_153645252.1 | hypothetical protein | - |
| H5404_RS17280 () | 2034258..2034749 | - | 492 | WP_140220174.1 | hypothetical protein | - |
| H5404_RS17285 () | 2034742..2035044 | - | 303 | WP_140220176.1 | hypothetical protein | - |
| H5404_RS17290 () | 2035135..2035227 | - | 93 | WP_005494807.1 | DUF3265 domain-containing protein | - |
| H5404_RS17295 () | 2035242..2035508 | - | 267 | WP_140220178.1 | hypothetical protein | - |
| H5404_RS17300 () | 2035586..2035930 | - | 345 | WP_140220180.1 | hypothetical protein | - |
| H5404_RS17305 () | 2035963..2036112 | - | 150 | WP_140220182.1 | DUF3265 domain-containing protein | - |
| H5404_RS17310 () | 2036069..2036452 | - | 384 | WP_140220184.1 | HNH endonuclease | - |
| H5404_RS17315 () | 2036496..2036573 | - | 78 | WP_140220198.1 | DUF3265 domain-containing protein | - |
| H5404_RS25865 () | 2037041..2037130 | - | 90 | Protein_1800 | DUF3265 domain-containing protein | - |
| H5404_RS17325 () | 2037649..2037741 | - | 93 | WP_072829069.1 | DUF3265 domain-containing protein | - |
| H5404_RS17330 () | 2037756..2038121 | - | 366 | WP_140220186.1 | hypothetical protein | - |
| H5404_RS17335 () | 2038103..2038582 | - | 480 | WP_025537003.1 | type VI secretion system amidase effector protein Tae4 | - |
| H5404_RS17340 () | 2038723..2038824 | - | 102 | WP_080358283.1 | DUF3265 domain-containing protein | - |
| H5404_RS17345 () | 2039306..2039665 | - | 360 | WP_140220188.1 | VOC family protein | - |
| H5404_RS17350 () | 2039828..2040223 | - | 396 | WP_140220190.1 | DUF3465 domain-containing protein | - |
| H5404_RS17355 () | 2040410..2040961 | - | 552 | WP_140220192.1 | hypothetical protein | - |
| H5404_RS17360 () | 2041193..2041798 | - | 606 | WP_140220200.1 | hypothetical protein | - |
| H5404_RS17365 () | 2041944..2042351 | - | 408 | WP_140220194.1 | OsmC family protein | - |
| H5404_RS17370 () | 2042541..2043371 | - | 831 | WP_140220196.1 | hypothetical protein | - |
| H5404_RS17375 () | 2043531..2043959 | - | 429 | WP_140115085.1 | hypothetical protein | - |
| H5404_RS17380 () | 2044669..2045568 | - | 900 | WP_138922582.1 | hypothetical protein | - |
| H5404_RS17385 () | 2046277..2046870 | - | 594 | WP_140218798.1 | hypothetical protein | - |
| H5404_RS17390 () | 2047031..2047390 | - | 360 | WP_140218796.1 | Ypar14, super integron cassette | - |
| H5404_RS17395 () | 2047384..2047530 | - | 147 | WP_140218802.1 | DUF3265 domain-containing protein | - |
| H5404_RS17400 () | 2047546..2048031 | - | 486 | Protein_1816 | hypothetical protein | - |
| H5404_RS17405 () | 2048109..2048612 | - | 504 | WP_025630536.1 | hypothetical protein | - |
| H5404_RS17410 () | 2049779..2049997 | - | 219 | WP_140218794.1 | hypothetical protein | - |
| H5404_RS17415 () | 2050249..2050554 | - | 306 | WP_017191351.1 | hypothetical protein | - |
| H5404_RS17420 () | 2050554..2050940 | - | 387 | WP_029791167.1 | type II toxin-antitoxin system YafO family toxin | - |
| H5404_RS17425 () | 2050959..2051102 | - | 144 | WP_155397170.1 | hypothetical protein | - |
| H5404_RS17430 () | 2051154..2051246 | - | 93 | WP_170890800.1 | DUF3265 domain-containing protein | - |
| H5404_RS17435 () | 2051909..2052871 | + | 963 | WP_029830726.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| H5404_RS17440 () | 2052922..2053395 | - | 474 | WP_005458833.1 | DUF2947 domain-containing protein | - |
| H5404_RS17445 () | 2053409..2053996 | - | 588 | WP_140218792.1 | HD domain-containing protein | - |
| H5404_RS17450 () | 2053998..2054582 | - | 585 | WP_140218790.1 | ribosomal protein S5-alanine N-acetyltransferase | - |
| H5404_RS17455 () | 2054619..2056163 | - | 1545 | WP_005494791.1 | transcriptional regulator TyrR | - |
| H5404_RS17460 () | 2056264..2057304 | - | 1041 | WP_062854347.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|