MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP058948 Location: 1845036..1866710 Organism: Escherichia coli strain SY3626C5 Replicon: chromosome
Accession: NZ_CP058948 Location: 1845036..1866710 Organism: Escherichia coli strain SY3626C5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZ988_RS08970 () | 1841086..1842069 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HZ988_RS08975 () | 1842547..1843920 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HZ988_RS08980 () | 1844049..1844984 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HZ988_RS08985 () | 1845036..1846271 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| HZ988_RS08990 () | 1846273..1846488 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HZ988_RS08995 () | 1846567..1846776 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1846592..1846770 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846592..1846770 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846592..1846770 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846592..1846770 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HZ988_RS09000 () | 1846769..1846963 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HZ988_RS09005 () | 1847020..1847829 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| HZ988_RS09010 () | 1847822..1850422 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| HZ988_RS09015 () | 1850524..1850799 | - | 276 | WP_000632297.1 | protein RacC | - |
| HZ988_RS09020 () | 1850874..1851044 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HZ988_RS09025 () | 1851044..1851265 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| HZ988_RS09030 () | 1851707..1852195 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| HZ988_RS09035 () | 1852192..1852347 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| HZ988_RS09040 () | 1852801..1853277 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| HZ988_RS09045 () | 1853401..1853697 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| HZ988_RS09050 () | 1853720..1854142 | + | 423 | WP_000693797.1 | phage protein | - |
| HZ988_RS09055 () | 1854155..1855012 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| HZ988_RS09060 () | 1855019..1855765 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| HZ988_RS09065 () | 1855788..1856348 | + | 561 | WP_000450663.1 | DUF1627 domain-containing protein | - |
| HZ988_RS09070 () | 1856436..1856621 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HZ988_RS09075 () | 1856818..1858275 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| HZ988_RS09080 () | 1858413..1858676 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HZ988_RS09085 () | 1858657..1859016 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| HZ988_RS09090 () | 1859490..1860422 | + | 933 | Protein_1777 | phage tail length tape measure family protein | - |
| HZ988_RS09095 () | 1860425..1860640 | + | 216 | Protein_1778 | Ail/Lom family outer membrane beta-barrel protein | - |
| HZ988_RS09100 () | 1860782..1861762 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| HZ988_RS09105 () | 1861832..1862020 | + | 189 | Protein_1780 | Ail/Lom family outer membrane beta-barrel protein | - |
| HZ988_RS09110 () | 1862085..1865447 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HZ988_RS09115 () | 1865447..1866022 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HZ988_RS09120 () | 1866120..1866710 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HZ988_RS09125 () | 1867027..1867260 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| HZ988_RS09130 () | 1867329..1867442 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| HZ988_RS09135 () | 1867782..1867955 | + | 174 | WP_001157926.1 | hypothetical protein | - |
| HZ988_RS09140 () | 1868221..1868655 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HZ988_RS09145 () | 1868796..1869929 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |