MGE detailed information
MGE type: Conjugative plasmid MGE length: 129018 bp
Accession: NZ_CP058310 Location: 1..129018 Organism: Escherichia coli strain AMSCJX04 Replicon: plasmid pAMPD02
Accession: NZ_CP058310 Location: 1..129018 Organism: Escherichia coli strain AMSCJX04 Replicon: plasmid pAMPD02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS78_RS23830 () | 855..1143 | - | 289 | Protein_1 | transposase | - |
| HXS78_RS23835 () | 1198..1901 | - | 704 | Protein_2 | IS6 family transposase IS15DI | Transposase |
| HXS78_RS23840 () | 1913..3072 | - | 1160 | Protein_3 | DUF4238 domain-containing protein | - |
| HXS78_RS23845 () | 3102..4204 | - | 1103 | Protein_4 | nucleotide-binding protein | - |
| HXS78_RS23850 () | 4533..4790 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| HXS78_RS23855 () | 4790..5380 | + | 591 | WP_065800293.1 | hypothetical protein | - |
| HXS78_RS23860 () | 5645..7201 | + | 1557 | WP_001579759.1 | AAA family ATPase | - |
| HXS78_RS23865 () | 7396..8013 | + | 618 | WP_000521604.1 | hypothetical protein | - |
| HXS78_RS23870 () | 8072..9064 | - | 993 | WP_001579760.1 | hypothetical protein | - |
| HXS78_RS23875 () | 9979..10836 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| HXS78_RS23880 () | 10829..11311 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| HXS78_RS23885 () | 11304..11378 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| HXS78_RS23890 () | 11610..11867 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HXS78_RS23895 () | 12151..12357 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 12344..12405 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 12344..12405 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 12344..12405 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 12344..12405 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| HXS78_RS23900 () | 12661..12735 | - | 75 | Protein_15 | endonuclease | - |
| HXS78_RS23905 () | 12981..13193 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| HXS78_RS23910 () | 13329..13889 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| HXS78_RS23915 () | 13992..14852 | - | 861 | WP_000704514.1 | putative protein YcjY | VF |
| HXS78_RS23920 () | 14911..15657 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| HXS78_RS23925 () | 15677..20947 | - | 5271 | WP_000986962.1 | Multifunctional conjugation protein TraI | Relaxase |
| HXS78_RS23930 () | 21029..21256 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HXS78_RS23935 () | 21256..21654 | + | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HXS78_RS23940 () | 21663..23816 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| HXS78_RS23945 () | 24069..24800 | - | 732 | WP_023565183.1 | complement resistance protein TraT | - |
| HXS78_RS23950 () | 24832..25329 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| HXS78_RS23955 () | 25345..28167 | - | 2823 | WP_001007018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HXS78_RS23960 () | 28164..29537 | - | 1374 | WP_001517790.1 | conjugal transfer protein TraH | - |
| HXS78_RS23965 () | 29537..29950 | - | 414 | WP_001324104.1 | F-type conjugal transfer protein TrbF | - |
| HXS78_RS23970 () | 29904..30245 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| HXS78_RS23975 () | 30175..30720 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HXS78_RS23980 () | 30707..30991 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HXS78_RS23985 () | 31072..31386 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| HXS78_RS23990 () | 31388..31735 | - | 348 | WP_001287890.1 | conjugal transfer protein TrbA | - |
| HXS78_RS23995 () | 31751..32494 | - | 744 | WP_177754131.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HXS78_RS24000 () | 32487..32744 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| HXS78_RS24005 () | 32771..34579 | - | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HXS78_RS24010 () | 34576..35214 | - | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HXS78_RS24015 () | 35223..36215 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| HXS78_RS24020 () | 36212..36844 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HXS78_RS24025 () | 36841..37227 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| HXS78_RS24030 () | 37224..39851 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| HXS78_RS24035 () | 40011..40232 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HXS78_RS24040 () | 40367..40882 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HXS78_RS24045 () | 40879..41130 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HXS78_RS24050 () | 41142..41372 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| HXS78_RS24055 () | 41326..41916 | - | 591 | WP_001376242.1 | conjugal transfer protein TraP | - |
| HXS78_RS24060 () | 41906..43333 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| HXS78_RS24065 () | 43333..44037 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HXS78_RS24070 () | 44048..44614 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HXS78_RS24075 () | 44636..44947 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HXS78_RS24080 () | 44962..45327 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| HXS78_RS24085 () | 45360..45755 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HXS78_RS24090 () | 45854..46543 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| HXS78_RS24095 () | 46730..47113 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| HXS78_RS24100 () | 47434..48036 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| HXS78_RS24105 () | 48333..49154 | - | 822 | WP_001234426.1 | DUF945 domain-containing protein | - |
| HXS78_RS24110 () | 49272..49559 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| HXS78_RS24115 () | 50480..50638 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 50682..50906 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50682..50906 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50682..50906 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50682..50906 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HXS78_RS24120 () | 50718..50906 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HXS78_RS24125 () | 50918..51637 | - | 720 | WP_001276238.1 | plasmid SOS inhibition protein A | - |
| HXS78_RS24130 () | 51634..52068 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| HXS78_RS24135 () | 52123..52320 | - | 198 | Protein_62 | hypothetical protein | - |
| HXS78_RS24140 () | 52348..52581 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| HXS78_RS24145 () | 52649..53188 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| HXS78_RS24150 () | 53214..53420 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| HXS78_RS24155 () | 54559..55530 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HXS78_RS24160 () | 55530..56696 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| HXS78_RS24165 () | 56996..57693 | - | 698 | Protein_68 | IS1 family transposase IS1S | Transposase |
| HXS78_RS24170 () | 58178..60379 | - | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| HXS78_RS24175 () | 60461..61738 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| HXS78_RS24180 () | 61735..63477 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| HXS78_RS24185 () | 63477..64424 | - | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| HXS78_RS24190 () | 64425..66149 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| HXS78_RS24195 () | 66285..67478 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| HXS78_RS24200 () | 67858..68238 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| HXS78_RS24205 () | 68579..68992 | - | 414 | Protein_76 | phosphopyruvate hydratase | - |
| HXS78_RS24210 () | 68990..69247 | + | 258 | Protein_77 | Tn3 family transposase | - |
| HXS78_RS24215 () | 69481..70338 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| HXS78_RS24220 () | 70335..71192 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| HXS78_RS24225 () | 71189..72016 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| HXS78_RS24230 () | 72016..72930 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| HXS78_RS24235 () | 73286..73983 | + | 698 | Protein_82 | IS1 family transposase IS1S | Transposase |
| HXS78_RS24240 () | 74163..74676 | - | 514 | Protein_83 | DUF4113 domain-containing protein | - |
| HXS78_RS24245 () | 74737..74841 | - | 105 | Protein_84 | AAA family ATPase | - |
| HXS78_RS24250 () | 74843..75166 | - | 324 | Protein_85 | IS21 family transposase IS21 | Transposase |
| HXS78_RS24255 () | 75912..76889 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HXS78_RS24260 () | 77174..77914 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| HXS78_RS24265 () | 78035..78223 | - | 189 | WP_001324033.1 | hypothetical protein | - |
| HXS78_RS24270 () | 78597..79499 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| HXS78_RS24275 () | 79568..80677 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| HXS78_RS24280 () | 81110..82063 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| HXS78_RS24285 () | 83336..83494 | - | 159 | WP_001324039.1 | integrase core domain-containing protein | - |
| HXS78_RS24290 () | 83678..84877 | + | 1200 | Protein_93 | IS3 family transposase IS629 | Transposase |
| HXS78_RS24295 () | 85025..85350 | - | 326 | Protein_94 | IS3 family transposase ISLad1 | Transposase |
| HXS78_RS24300 () | 86331..87518 | + | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HXS78_RS24305 () | 87515..89455 | + | 1941 | WP_000733250.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| HXS78_RS24310 () | 89459..90829 | + | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| HXS78_RS24315 () | 91303..91497 | + | 195 | Protein_98 | IS200-IS605 family transposase IS200C | Transposase |
| HXS78_RS24320 () | 91626..92567 | - | 942 | WP_000974762.1 | hypothetical protein | - |
| HXS78_RS24325 () | 92802..94191 | - | 1390 | Protein_100 | ISNCY family transposase ISKpn21 | Transposase |
| HXS78_RS24330 () | 94501..94650 | - | 150 | Protein_101 | IS3 family transposase IS2 | Transposase |
| HXS78_RS24335 () | 94828..96021 | - | 1194 | WP_177754138.1 | GTP-binding protein | - |
| HXS78_RS24340 () | 97244..98480 | - | 1237 | Protein_103 | IS3 family transposase IS2 | Transposase |
| HXS78_RS24345 () | 99107..99400 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| HXS78_RS24350 () | 99458..99633 | - | 176 | Protein_105 | lysis protein | - |
| HXS78_RS24355 () | 100211..101312 | + | 1102 | Protein_106 | IS481 family transposase ISKpn28 | Transposase |
| HXS78_RS24360 () | 102548..103663 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| HXS78_RS24365 () | 103803..107462 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HXS78_RS24370 () | 107566..108795 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| HXS78_RS24375 () | 108880..109836 | + | 957 | WP_064055648.1 | Ferri-bacillibactin esterase BesA | VF |
| HXS78_RS24380 () | 109881..112058 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| HXS78_RS24385 () | 112293..112990 | + | 698 | Protein_112 | IS1 family transposase | - |
| HXS78_RS24390 () | 113001..113204 | - | 204 | WP_001259759.1 | colicin V family bacteriocin | - |
| HXS78_RS24395 () | 113182..113418 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| HXS78_RS24400 () | 113882..114163 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| HXS78_RS24405 () | 114336..114503 | + | 168 | Protein_116 | colicin-B | - |
| HXS78_RS24410 () | 114521..115048 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| HXS78_RS24415 () | 115292..116107 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| HXS78_RS24420 () | 116157..116510 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| HXS78_RS24425 () | 116457..116582 | - | 126 | Protein_120 | colicin immunity protein | - |
| HXS78_RS24430 () | 116688..117479 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| HXS78_RS24435 () | 117733..118437 | - | 705 | WP_177754145.1 | IS6 family transposase IS15DI | Transposase |
| HXS78_RS24440 () | 118511..118984 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| HXS78_RS24445 () | 119142..120155 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HXS78_RS24450 () | 120441..121145 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| HXS78_RS24455 () | 121542..122756 | + | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| HXS78_RS24460 () | 122790..124193 | - | 1404 | WP_072135327.1 | DNA cytosine methyltransferase | - |
| HXS78_RS24465 () | 124317..124589 | + | 273 | Protein_128 | IS1 family transposase | - |
| HXS78_RS24470 () | 124846..125519 | + | 674 | Protein_129 | IS1 family transposase IS1S | Transposase |
| HXS78_RS24475 () | 125554..128349 | - | 2796 | Protein_130 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HXS78_RS24480 () | 128363..128695 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|