MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95282 bp
Accession: NZ_CP058211 Location: 1..95282 Organism: Escherichia marmotae strain RHB24-C12 Replicon: plasmid pRHB24-C12_3
Accession: NZ_CP058211 Location: 1..95282 Organism: Escherichia marmotae strain RHB24-C12 Replicon: plasmid pRHB24-C12_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY12_RS23565 () | 1..978 | + | 978 | WP_001559854.1 | RepB family plasmid replication initiator protein | - |
| HVY12_RS23570 () | 1263..2004 | - | 742 | Protein_1 | site-specific integrase | - |
| HVY12_RS23575 () | 2425..3783 | - | 1359 | WP_181238286.1 | heavy metal sensor histidine kinase | - |
| HVY12_RS23580 () | 3783..4454 | - | 672 | WP_024188661.1 | putative transcriptional regulatory protein YedW | VF |
| HVY12_RS23585 () | 4586..4999 | + | 414 | WP_181238287.1 | hydroxyisourate hydrolase | - |
| HVY12_RS23590 () | 5098..6090 | + | 993 | WP_181238288.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| HVY12_RS23595 () | 6091..6726 | + | 636 | WP_001559859.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| HVY12_RS23600 () | 7086..7892 | - | 807 | WP_181238289.1 | site-specific integrase | - |
| HVY12_RS23605 () | 7893..8198 | - | 306 | WP_001159866.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HVY12_RS23610 () | 8200..8418 | - | 219 | WP_000813629.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HVY12_RS23615 () | 9009..9239 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HVY12_RS23620 () | 9236..9652 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HVY12_RS23625 () | 9814..10975 | - | 1162 | Protein_12 | AAA family ATPase | - |
| HVY12_RS23630 () | 11036..11833 | - | 798 | WP_000544799.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23635 () | 11833..13005 | - | 1173 | WP_047612361.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23640 () | 13108..13383 | - | 276 | Protein_15 | AAA family ATPase | - |
| HVY12_RS23645 () | 14516..15946 | + | 1431 | WP_181238290.1 | hypothetical protein | VF |
| HVY12_RS23650 () | 16709..17464 | - | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23655 () | 17481..19016 | - | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23660 () | 19503..20150 | + | 648 | WP_181238291.1 | hypothetical protein | VF |
| HVY12_RS23665 () | 20147..20677 | + | 531 | WP_181238292.1 | hypothetical protein | VF |
| HVY12_RS23670 () | 21177..21641 | - | 465 | WP_181238293.1 | hypothetical protein | VF |
| HVY12_RS23675 () | 21658..22422 | - | 765 | WP_181238294.1 | hypothetical protein | VF |
| HVY12_RS23680 () | 22453..23241 | - | 789 | WP_181238295.1 | hypothetical protein | VF |
| HVY12_RS23685 () | 23400..24200 | - | 801 | WP_181238296.1 | hypothetical protein | - |
| HVY12_RS23690 () | 24440..24931 | - | 492 | WP_181237736.1 | hypothetical protein | VF |
| HVY12_RS23695 () | 24966..25757 | - | 792 | WP_181237737.1 | Chaperone protein FaeE | VF |
| HVY12_RS23700 () | 25750..28152 | - | 2403 | WP_181238225.1 | Outer membrane usher protein YraJ | VF |
| HVY12_RS23705 () | 28209..28733 | - | 525 | WP_181238305.1 | hypothetical protein | VF |
| HVY12_RS23710 () | 28995..29102 | + | 108 | WP_157924485.1 | hypothetical protein | - |
| HVY12_RS23720 () | 31812..32669 | - | 858 | WP_137585087.1 | incFII family plasmid replication initiator RepA | - |
| HVY12_RS23725 () | 32662..32736 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| HVY12_RS23730 () | 32960..33220 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| HVY12_RS23735 () | 33504..33653 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 33698..33757 | + | 60 | NuclAT_0 | - | - |
| - () | 33698..33757 | + | 60 | NuclAT_0 | - | - |
| - () | 33698..33757 | + | 60 | NuclAT_0 | - | - |
| - () | 33698..33757 | + | 60 | NuclAT_0 | - | - |
| HVY12_RS23740 () | 34301..34531 | - | 231 | WP_181238297.1 | hypothetical protein | - |
| HVY12_RS23745 () | 34700..35299 | - | 600 | WP_181238298.1 | hypothetical protein | - |
| HVY12_RS23750 () | 35671..35865 | + | 195 | WP_024234536.1 | hypothetical protein | - |
| HVY12_RS23755 () | 36019..36579 | - | 561 | WP_000139377.1 | fertility inhibition protein FinO | - |
| HVY12_RS23760 () | 36653..37402 | - | 750 | WP_181238299.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HVY12_RS23765 () | 37410..37631 | - | 222 | WP_181238300.1 | hypothetical protein | - |
| HVY12_RS23770 () | 37631..42808 | - | 5178 | WP_181238301.1 | Multifunctional conjugation protein TraI | Relaxase |
| HVY12_RS23775 () | 42815..45001 | - | 2187 | WP_167780130.1 | type IV conjugative transfer system coupling protein TraD | - |
| HVY12_RS23780 () | 45042..45545 | - | 504 | WP_021555346.1 | DUF2726 domain-containing protein | - |
| HVY12_RS23785 () | 45552..46244 | - | 693 | WP_181238302.1 | hypothetical protein | - |
| HVY12_RS23790 () | 46372..47109 | - | 738 | WP_181238303.1 | complement resistance protein TraT | - |
| HVY12_RS23795 () | 47181..47828 | - | 648 | WP_181238304.1 | hypothetical protein | - |
| HVY12_RS23800 () | 47842..50730 | - | 2889 | WP_181238267.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HVY12_RS23805 () | 50730..52094 | - | 1365 | WP_181238306.1 | conjugal transfer protein TraH | - |
| HVY12_RS23810 () | 53149..53721 | - | 573 | WP_089572152.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HVY12_RS23815 () | 53723..53995 | - | 273 | WP_181238268.1 | hypothetical protein | - |
| HVY12_RS23820 () | 54013..54798 | - | 786 | WP_181238269.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HVY12_RS23825 () | 54800..56734 | - | 1935 | WP_181238270.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HVY12_RS23830 () | 56731..57303 | - | 573 | WP_089572160.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HVY12_RS23835 () | 57391..58530 | + | 1140 | WP_181238307.1 | hypothetical protein | - |
| HVY12_RS23840 () | 58899..59897 | - | 999 | WP_181238271.1 | conjugal transfer pilus assembly protein TraU | - |
| HVY12_RS23845 () | 59894..60511 | - | 618 | WP_077817551.1 | type-F conjugative transfer system protein TraW | - |
| HVY12_RS23850 () | 60508..60732 | - | 225 | WP_181238272.1 | TraR/DksA C4-type zinc finger protein | - |
| HVY12_RS23855 () | 60735..61151 | - | 417 | WP_181238273.1 | type-F conjugative transfer system protein TrbI | - |
| HVY12_RS23860 () | 61130..61981 | - | 852 | Protein_59 | ATP-binding protein | - |
| HVY12_RS23865 () | 62216..63751 | + | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23870 () | 63768..64523 | + | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23875 () | 64623..66416 | - | 1794 | Protein_62 | TraC family protein | - |
| HVY12_RS23880 () | 66413..66925 | - | 513 | WP_181238274.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HVY12_RS23885 () | 66994..68271 | - | 1278 | WP_181238275.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HVY12_RS23890 () | 68264..69043 | - | 780 | WP_181238276.1 | type-F conjugative transfer system secretin TraK | - |
| HVY12_RS23895 () | 69018..69596 | - | 579 | WP_033549278.1 | type IV conjugative transfer system protein TraE | - |
| HVY12_RS23900 () | 69607..69906 | - | 300 | WP_001204091.1 | type IV conjugative transfer system protein TraL | - |
| HVY12_RS23905 () | 69937..70308 | - | 372 | WP_053272384.1 | conjugal transfer protein TraA | - |
| HVY12_RS23910 () | 70610..70819 | - | 210 | WP_001114348.1 | TraY domain-containing protein | - |
| HVY12_RS23915 () | 70908..71645 | - | 738 | WP_181238277.1 | hypothetical protein | - |
| HVY12_RS23920 () | 71827..72210 | - | 384 | WP_089590457.1 | hypothetical protein | - |
| HVY12_RS23925 () | 72688..73119 | + | 432 | WP_181238278.1 | hypothetical protein | VF |
| HVY12_RS23930 () | 73201..74373 | + | 1173 | WP_047612361.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23935 () | 74373..75170 | + | 798 | WP_000544799.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23940 () | 75554..76375 | - | 822 | WP_063097562.1 | DUF945 domain-containing protein | - |
| HVY12_RS23945 () | 76482..76778 | - | 297 | WP_089679329.1 | hypothetical protein | - |
| HVY12_RS23950 () | 77578..78141 | - | 564 | WP_001672068.1 | class I SAM-dependent methyltransferase | - |
| HVY12_RS23955 () | 78189..79550 | - | 1362 | WP_181238279.1 | DUF3560 domain-containing protein | - |
| HVY12_RS23960 () | 79602..79832 | - | 231 | WP_000218655.1 | hypothetical protein | - |
| HVY12_RS23965 () | 80346..80880 | + | 535 | Protein_80 | hypothetical protein | - |
| HVY12_RS23970 () | 80859..81050 | - | 192 | WP_088137735.1 | hypothetical protein | - |
| HVY12_RS23975 () | 81050..81469 | - | 420 | WP_181238280.1 | DUF1380 family protein | - |
| HVY12_RS23980 () | 81516..81818 | - | 303 | WP_001436678.1 | antirestriction protein | - |
| HVY12_RS23985 () | 82354..83130 | - | 777 | WP_181238281.1 | hypothetical protein | - |
| HVY12_RS23990 () | 83175..83609 | - | 435 | WP_034169365.1 | DUF1380 family protein | - |
| HVY12_RS23995 () | 83623..83844 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| HVY12_RS24000 () | 83845..84528 | - | 684 | WP_000085890.1 | DNA methylase | - |
| HVY12_RS24005 () | 84605..84910 | - | 306 | WP_077135946.1 | hypothetical protein | - |
| HVY12_RS24010 () | 84914..85816 | - | 903 | WP_181238308.1 | DUF1281 domain-containing protein | - |
| HVY12_RS24015 () | 86251..87210 | + | 960 | WP_181238282.1 | plasmid segregation protein ParM | - |
| HVY12_RS24020 () | 87210..87605 | + | 396 | WP_181238283.1 | plasmid partitioning/stability family protein | - |
| HVY12_RS24025 () | 89042..89575 | + | 534 | WP_097310251.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| HVY12_RS24030 () | 89752..90095 | - | 344 | Protein_93 | hypothetical protein | - |
| HVY12_RS24035 () | 90328..91524 | + | 1197 | WP_001358663.1 | IS110 family transposase ISEc20 | Transposase |
| HVY12_RS24040 () | 91503..91898 | - | 396 | WP_181238309.1 | hypothetical protein | - |
| HVY12_RS24045 () | 92365..93012 | + | 648 | WP_181238284.1 | hypothetical protein | - |
| HVY12_RS24050 () | 93423..93698 | - | 276 | WP_181238285.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVY12_RS24055 () | 93698..93982 | - | 285 | WP_024212708.1 | ribbon-helix-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|