MGE detailed information
MGE type: Conjugative plasmid MGE length: 160081 bp
Accession: NZ_CP057216 Location: 1..160081 Organism: Escherichia fergusonii strain RHB33-C04 Replicon: plasmid pRHB33-C04_2
Accession: NZ_CP057216 Location: 1..160081 Organism: Escherichia fergusonii strain RHB33-C04 Replicon: plasmid pRHB33-C04_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ08_RS22935 () | 1..858 | + | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| HVZ08_RS22940 () | 1772..2041 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| HVZ08_RS22945 () | 2038..2319 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVZ08_RS22950 () | 2799..4295 | + | 1497 | Protein_4 | hypothetical protein | - |
| HVZ08_RS22955 () | 4478..5661 | - | 1184 | Protein_5 | IS91 family transposase ISEc37 | Transposase |
| HVZ08_RS22960 () | 5661..6026 | - | 366 | WP_097418983.1 | transposase | - |
| HVZ08_RS22965 () | 7012..7740 | + | 729 | WP_112042698.1 | putative fimbrial chaperone EcpE | VF |
| HVZ08_RS22970 () | 7804..8304 | + | 501 | WP_097450246.1 | CFA/I fimbrial subunit B | VF |
| HVZ08_RS22975 () | 8343..10979 | + | 2637 | WP_181667513.1 | TcfC E-set like domain-containing protein | - |
| HVZ08_RS22980 () | 11039..12121 | + | 1083 | WP_181667514.1 | hypothetical protein | - |
| HVZ08_RS22985 () | 12482..13179 | + | 698 | Protein_11 | IS1 family transposase IS1G | Transposase |
| HVZ08_RS22990 () | 13361..14952 | - | 1592 | Protein_12 | IS66 family transposase ISEc47 | Transposase |
| HVZ08_RS22995 () | 14983..15333 | - | 351 | WP_000624677.1 | IS66 family transposase IS682 | Transposase |
| HVZ08_RS23000 () | 15330..15437 | - | 108 | Protein_14 | IS66 family insertion sequence element accessory protein TnpB | - |
| HVZ08_RS23005 () | 16009..16767 | + | 759 | WP_053265824.1 | AraC family transcriptional regulator | - |
| HVZ08_RS23010 () | 17100..18140 | + | 1041 | WP_053265825.1 | hypothetical protein | - |
| HVZ08_RS23015 () | 18523..19863 | + | 1341 | WP_181667515.1 | sensor domain-containing diguanylate cyclase | - |
| HVZ08_RS23020 () | 20196..20846 | + | 651 | WP_181667516.1 | IS66 family transposase IS679 | Transposase |
| HVZ08_RS23025 () | 20846..21193 | + | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| HVZ08_RS23030 () | 21213..22785 | + | 1573 | Protein_20 | IS66 family transposase ISCro1 | Transposase |
| HVZ08_RS23035 () | 22852..23094 | + | 243 | WP_072135115.1 | hypothetical protein | - |
| HVZ08_RS23040 () | 23072..23956 | + | 885 | WP_181667517.1 | fimbrial | - |
| HVZ08_RS23045 () | 23995..27895 | + | 3901 | Protein_23 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| HVZ08_RS23050 () | 28045..28250 | - | 206 | Protein_24 | sulfite reductase subunit C | - |
| HVZ08_RS23055 () | 28352..28732 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| HVZ08_RS23060 () | 28729..29076 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| HVZ08_RS23065 () | 29126..29569 | + | 444 | Protein_27 | IS66 family transposase ISEc8 | Transposase |
| HVZ08_RS23070 () | 29603..32611 | - | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| HVZ08_RS23075 () | 32775..33326 | + | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HVZ08_RS23080 () | 33342..33707 | + | 366 | Protein_30 | ATP-binding protein | - |
| HVZ08_RS23085 () | 33765..34462 | + | 698 | Protein_31 | IS1 family transposase IS1G | Transposase |
| HVZ08_RS23090 () | 36033..36215 | + | 183 | WP_001470895.1 | hypothetical protein | - |
| HVZ08_RS23095 () | 36373..36612 | + | 240 | WP_181667530.1 | Autotransporter adhesin SadA | VF |
| HVZ08_RS23100 () | 36918..37823 | + | 906 | WP_158121933.1 | Right origin-binding protein | VF |
| HVZ08_RS23105 () | 38008..38838 | + | 831 | WP_181667518.1 | polysaccharide deacetylase family protein | - |
| HVZ08_RS23110 () | 38848..39945 | + | 1098 | WP_172746862.1 | glycosyltransferase family 4 protein | - |
| HVZ08_RS23115 () | 40027..40968 | + | 942 | WP_158121894.1 | VirK/YbjX family protein | - |
| HVZ08_RS23120 () | 40980..41927 | + | 948 | WP_158121895.1 | hypothetical protein | - |
| HVZ08_RS23125 () | 42144..42395 | + | 252 | WP_158121896.1 | hypothetical protein | - |
| HVZ08_RS23130 () | 42488..43633 | + | 1146 | WP_181667519.1 | DUF4056 domain-containing protein | - |
| HVZ08_RS23135 () | 43668..44549 | + | 882 | WP_181667520.1 | hypothetical protein | - |
| HVZ08_RS23140 () | 44570..45409 | + | 840 | WP_158121898.1 | Right origin-binding protein | VF |
| HVZ08_RS23145 () | 46063..47292 | + | 1230 | WP_181667531.1 | phosphoadenosine phosphosulfate reductase | - |
| HVZ08_RS23150 () | 47277..47915 | + | 639 | WP_181667521.1 | ParB N-terminal domain-containing protein | - |
| HVZ08_RS23155 () | 48007..48336 | + | 330 | WP_158121923.1 | IS66 family transposase ISEc49 | Transposase |
| HVZ08_RS23160 () | 48323..48427 | + | 105 | Protein_46 | IS66 family insertion sequence element accessory protein TnpB | - |
| HVZ08_RS23165 () | 48553..50069 | - | 1517 | Protein_47 | IS3 family transposase | - |
| HVZ08_RS23170 () | 50228..50455 | + | 228 | Protein_48 | IS256 family transposase ISEic2 | Transposase |
| HVZ08_RS23175 () | 50644..52998 | - | 2355 | WP_181667522.1 | Autotransporter adhesin UpaG | VF |
| HVZ08_RS23180 () | 56378..57082 | + | 705 | WP_180932806.1 | Chaperone protein FaeE | VF |
| HVZ08_RS23185 () | 57520..58320 | + | 801 | WP_181667523.1 | hypothetical protein | - |
| HVZ08_RS23190 () | 58643..59041 | - | 399 | WP_181670220.1 | hypothetical protein | - |
| HVZ08_RS23195 () | 60355..60942 | + | 588 | WP_158121796.1 | hypothetical protein | - |
| HVZ08_RS23200 () | 61177..62157 | + | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| HVZ08_RS23205 () | 62938..63462 | + | 525 | WP_181667525.1 | hypothetical protein | VF |
| HVZ08_RS23210 () | 63662..66070 | + | 2409 | WP_181667526.1 | Outer membrane usher protein FimD | VF |
| HVZ08_RS23215 () | 66063..66755 | + | 693 | WP_181667527.1 | Chaperone protein FaeE | VF |
| HVZ08_RS23220 () | 67297..67554 | - | 258 | WP_181667528.1 | hypothetical protein | - |
| HVZ08_RS23225 () | 68183..68323 | + | 141 | WP_089587962.1 | transcriptional regulator | - |
| HVZ08_RS23230 () | 68444..69184 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| HVZ08_RS23235 () | 69469..69897 | - | 429 | Protein_61 | protein RepA | - |
| HVZ08_RS23240 () | 69958..70755 | - | 798 | WP_181667532.1 | IS21 family transposase IS21 | Transposase |
| HVZ08_RS23245 () | 70755..71927 | - | 1173 | WP_181575950.1 | IS21 family transposase IS21 | Transposase |
| HVZ08_RS23250 () | 72030..72593 | - | 564 | Protein_64 | replication initiation protein | - |
| HVZ08_RS23255 () | 73359..73842 | - | 484 | Protein_65 | hypothetical protein | - |
| HVZ08_RS23260 () | 73830..74099 | - | 270 | WP_039587803.1 | hypothetical protein | - |
| HVZ08_RS23265 () | 74404..74505 | + | 102 | WP_071598326.1 | transposase domain-containing protein | - |
| HVZ08_RS23270 () | 74668..75528 | + | 861 | WP_000704533.1 | putative protein YcjY | VF |
| HVZ08_RS23275 () | 75843..76055 | + | 213 | WP_097330523.1 | hypothetical protein | - |
| HVZ08_RS23280 () | 76117..76740 | - | 624 | WP_181667529.1 | hypothetical protein | - |
| HVZ08_RS23285 () | 76740..76997 | - | 258 | WP_000343099.1 | hypothetical protein | - |
| HVZ08_RS23290 () | 77346..81140 | + | 3795 | WP_175616550.1 | pcar | - |
| HVZ08_RS23295 () | 81185..81601 | - | 417 | WP_097418959.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HVZ08_RS23300 () | 81598..81828 | - | 231 | WP_097309516.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HVZ08_RS23305 () | 82064..82564 | + | 501 | WP_000528932.1 | hypothetical protein | - |
| HVZ08_RS23310 () | 82577..83350 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| HVZ08_RS23315 () | 83517..84650 | + | 1134 | WP_181576151.1 | DUF3800 domain-containing protein | - |
| HVZ08_RS23320 () | 84684..85196 | - | 513 | WP_000151784.1 | hypothetical protein | - |
| HVZ08_RS23325 () | 85427..85504 | + | 78 | Protein_79 | helix-turn-helix domain-containing protein | - |
| HVZ08_RS23330 () | 85748..86092 | + | 345 | WP_001559862.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin Detail |
| HVZ08_RS23335 () | 86115..86609 | + | 495 | WP_024195926.1 | type II toxin-antitoxin system YhaV family toxin | Toxin Detail |
| HVZ08_RS23340 () | 86791..89547 | + | 2757 | Protein_82 | hypothetical protein | - |
| HVZ08_RS23345 () | 89599..90296 | + | 698 | Protein_83 | IS1 family transposase IS1G | Transposase |
| HVZ08_RS23350 () | 90311..91375 | + | 1065 | Protein_84 | hypothetical protein | - |
| HVZ08_RS23355 () | 91934..92152 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HVZ08_RS23360 () | 92154..92459 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HVZ08_RS23365 () | 92460..93269 | + | 810 | WP_097418958.1 | site-specific integrase | - |
| HVZ08_RS23370 () | 93407..93682 | - | 276 | WP_097418957.1 | CopG family transcriptional regulator | - |
| HVZ08_RS23375 () | 93676..94320 | - | 645 | WP_000633911.1 | AAA family ATPase | - |
| HVZ08_RS23380 () | 94549..95520 | + | 972 | WP_097418955.1 | plasmid segregation protein parM | - |
| HVZ08_RS23385 () | 95525..95917 | + | 393 | WP_000340833.1 | plasmid partitioning/stability family protein | - |
| HVZ08_RS23390 () | 95922..97192 | - | 1271 | Protein_92 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HVZ08_RS23395 () | 97192..97629 | - | 438 | WP_063101788.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVZ08_RS23400 () | 97626..97874 | - | 249 | WP_001775014.1 | DinI-like family protein | - |
| HVZ08_RS23405 () | 98897..100621 | + | 1725 | WP_181667502.1 | group II intron reverse transcriptase/maturase | - |
| HVZ08_RS23410 () | 100698..101593 | + | 896 | Protein_96 | DUF1281 domain-containing protein | - |
| HVZ08_RS23415 () | 101590..101859 | + | 270 | WP_181667533.1 | hypothetical protein | - |
| HVZ08_RS23420 () | 101936..102619 | + | 684 | WP_000086174.1 | DNA methylase | - |
| HVZ08_RS23425 () | 102620..102841 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HVZ08_RS23430 () | 102855..103289 | + | 435 | WP_097418950.1 | DUF1380 family protein | - |
| HVZ08_RS23435 () | 103334..104104 | + | 771 | WP_181667503.1 | hypothetical protein | - |
| HVZ08_RS23440 () | 104639..104941 | + | 303 | WP_077635719.1 | antirestriction protein | - |
| HVZ08_RS23445 () | 104988..105410 | + | 423 | WP_181667504.1 | DUF1380 family protein | - |
| HVZ08_RS23450 () | 105407..105598 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HVZ08_RS23455 () | 105568..105893 | - | 326 | Protein_105 | pilus assembly protein | - |
| HVZ08_RS23460 () | 106568..106798 | + | 231 | WP_000218655.1 | hypothetical protein | - |
| HVZ08_RS23465 () | 106850..108211 | + | 1362 | WP_097418948.1 | DUF3560 domain-containing protein | - |
| HVZ08_RS23470 () | 108259..108822 | + | 564 | WP_042974077.1 | class I SAM-dependent methyltransferase | - |
| HVZ08_RS23475 () | 109421..109627 | + | 207 | WP_077782986.1 | single-stranded DNA-binding protein | - |
| HVZ08_RS23480 () | 109653..110195 | + | 543 | WP_042974074.1 | single-stranded DNA-binding protein | - |
| HVZ08_RS23485 () | 110258..110491 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| HVZ08_RS23490 () | 110557..112515 | + | 1959 | WP_181667505.1 | ParB/RepB/Spo0J family partition protein | - |
| HVZ08_RS23495 () | 112570..113004 | + | 435 | WP_032235533.1 | conjugation system SOS inhibitor PsiB | - |
| HVZ08_RS23500 () | 113001..113720 | + | 720 | WP_042974070.1 | plasmid SOS inhibition protein A | - |
| - () | 113732..113948 | + | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 113732..113948 | + | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 113732..113948 | + | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 113732..113948 | + | 217 | NuclAT_0 | - | Antitoxin Detail |
| HVZ08_RS23505 () | 113994..114155 | + | 162 | WP_000775236.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HVZ08_RS23510 () | 114824..115030 | + | 207 | WP_181667506.1 | single-stranded DNA-binding protein | - |
| HVZ08_RS23515 () | 115055..115342 | + | 288 | WP_021569031.1 | hypothetical protein | - |
| HVZ08_RS23520 () | 115461..116282 | + | 822 | WP_042973148.1 | DUF945 domain-containing protein | - |
| HVZ08_RS23525 () | 116579..117181 | - | 603 | WP_072156291.1 | hypothetical protein | VF |
| HVZ08_RS23530 () | 117505..117888 | + | 384 | WP_040100321.1 | relaxosome protein TraM | - |
| HVZ08_RS23535 () | 118083..118754 | + | 672 | WP_040100314.1 | conjugal transfer transcriptional regulator TraJ | - |
| HVZ08_RS23540 () | 118892..119119 | + | 228 | WP_072039828.1 | conjugal transfer relaxosome protein TraY | - |
| HVZ08_RS23545 () | 119153..119518 | + | 366 | WP_040100313.1 | type IV conjugative transfer system pilin TraA | - |
| HVZ08_RS23550 () | 119533..119844 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HVZ08_RS23555 () | 119866..120432 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HVZ08_RS23560 () | 120443..121147 | + | 705 | WP_151674057.1 | type-F conjugative transfer system secretin TraK | - |
| HVZ08_RS23565 () | 121147..122574 | + | 1428 | WP_000146635.1 | conjugal transfer protein TraB | - |
| HVZ08_RS23570 () | 122564..123154 | + | 591 | WP_000002784.1 | conjugal transfer protein TraP | - |
| HVZ08_RS23575 () | 123093..123461 | + | 369 | WP_105466870.1 | conjugal transfer protein TrbD | - |
| HVZ08_RS23580 () | 123458..123973 | + | 516 | WP_105466871.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HVZ08_RS23585 () | 124107..124328 | + | 222 | WP_105466872.1 | conjugal transfer protein TraR | - |
| HVZ08_RS23590 () | 124473..125219 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| HVZ08_RS23595 () | 125234..126775 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| HVZ08_RS23600 () | 126956..127381 | + | 426 | WP_181667507.1 | hypothetical protein | - |
| HVZ08_RS23605 () | 127675..128079 | + | 405 | WP_105466874.1 | hypothetical protein | - |
| HVZ08_RS23610 () | 128076..128423 | + | 348 | WP_105466875.1 | hypothetical protein | - |
| HVZ08_RS23615 () | 128549..131194 | + | 2646 | WP_105466876.1 | type IV secretion system protein TraC | - |
| HVZ08_RS23620 () | 131576..132682 | - | 1107 | WP_181667508.1 | hypothetical protein | - |
| HVZ08_RS23625 () | 132766..133146 | + | 381 | WP_040100306.1 | type-F conjugative transfer system protein TrbI | - |
| HVZ08_RS23630 () | 133143..133775 | + | 633 | WP_181667509.1 | type-F conjugative transfer system protein TraW | - |
| HVZ08_RS23635 () | 133772..134764 | + | 993 | WP_040100302.1 | conjugal transfer pilus assembly protein TraU | - |
| HVZ08_RS23640 () | 134773..135411 | + | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HVZ08_RS23645 () | 135408..137216 | + | 1809 | WP_040100300.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HVZ08_RS23650 () | 137243..137503 | + | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| HVZ08_RS23655 () | 137496..138239 | + | 744 | WP_181667534.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HVZ08_RS23660 () | 138355..138636 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HVZ08_RS23665 () | 138623..139168 | + | 546 | WP_000059821.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HVZ08_RS23670 () | 139098..139438 | + | 341 | Protein_148 | P-type conjugative transfer protein TrbJ | - |
| HVZ08_RS23675 () | 139392..139805 | + | 414 | WP_094259396.1 | F-type conjugal transfer protein TrbF | - |
| HVZ08_RS23680 () | 139805..141178 | + | 1374 | WP_181667510.1 | conjugal transfer protein TraH | - |
| HVZ08_RS23685 () | 141175..143994 | + | 2820 | WP_151674034.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HVZ08_RS23690 () | 144019..144516 | + | 498 | WP_137546094.1 | surface exclusion protein | - |
| HVZ08_RS23695 () | 144548..145279 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| HVZ08_RS23700 () | 145482..146222 | + | 741 | WP_151674032.1 | hypothetical protein | - |
| HVZ08_RS23705 () | 146273..148435 | + | 2163 | WP_181667511.1 | type IV conjugative transfer system coupling protein TraD | - |
| HVZ08_RS23710 () | 148444..148842 | - | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HVZ08_RS23715 () | 148842..149069 | - | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HVZ08_RS23720 () | 149151..154421 | + | 5271 | WP_181667512.1 | Multifunctional conjugation protein TraI | Relaxase |
| HVZ08_RS23725 () | 154441..155181 | + | 741 | WP_094259392.1 | conjugal transfer pilus acetylase TraX | - |
| HVZ08_RS23730 () | 155240..156100 | + | 861 | WP_000704529.1 | putative protein YcjY | VF |
| HVZ08_RS23735 () | 156203..156760 | + | 558 | WP_047649932.1 | fertility inhibition protein FinO | - |
| HVZ08_RS23740 () | 156915..157118 | + | 204 | WP_040073114.1 | hypothetical protein | - |
| HVZ08_RS23745 () | 157861..158322 | + | 462 | WP_047649930.1 | thermonuclease family protein | - |
| - () | 158982..159043 | - | 62 | NuclAT_1 | - | - |
| - () | 158982..159043 | - | 62 | NuclAT_1 | - | - |
| - () | 158982..159043 | - | 62 | NuclAT_1 | - | - |
| - () | 158982..159043 | - | 62 | NuclAT_1 | - | - |
| HVZ08_RS23750 () | 159030..159236 | + | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | - |
| HVZ08_RS23755 () | 159520..159768 | + | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|