MGE detailed information
MGE type: Conjugative plasmid MGE length: 116663 bp
Accession: NZ_CP056160 Location: 1..116663 Organism: Escherichia marmotae strain RHBSTW-00814 Replicon: plasmid pRHBSTW-00814_2
Accession: NZ_CP056160 Location: 1..116663 Organism: Escherichia marmotae strain RHBSTW-00814 Replicon: plasmid pRHBSTW-00814_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV284_RS24000 () | 46..1077 | + | 1032 | WP_170898775.1 | replication initiation protein | - |
| HV284_RS24005 () | 1728..1943 | + | 216 | WP_181475185.1 | hypothetical protein | - |
| HV284_RS24010 () | 1997..2308 | + | 312 | WP_105266991.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV284_RS24015 () | 2308..2595 | + | 288 | WP_181475205.1 | helix-turn-helix transcriptional regulator | - |
| HV284_RS24020 () | 2844..4031 | - | 1188 | Protein_4 | IS91 family transposase ISEc37 | Transposase |
| HV284_RS24025 () | 4031..4396 | - | 366 | WP_181475186.1 | hypothetical protein | - |
| HV284_RS24030 () | 4847..5029 | + | 183 | WP_181475206.1 | hypothetical protein | - |
| HV284_RS24035 () | 5058..6125 | - | 1068 | Protein_7 | IS3 family transposase ISKpn38 | Transposase |
| HV284_RS24040 () | 6202..6999 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| HV284_RS24045 () | 6999..7316 | - | 318 | Protein_9 | IS91 family transposase ISEc37 | Transposase |
| HV284_RS24050 () | 7289..7417 | - | 129 | Protein_10 | IS91 family transposase ISEc37 | Transposase |
| HV284_RS24055 () | 7433..7621 | - | 189 | Protein_11 | IS91 family transposase ISEc37 | Transposase |
| HV284_RS24060 () | 7596..7775 | + | 180 | WP_181475187.1 | transposase | - |
| HV284_RS24065 () | 8323..8652 | + | 330 | WP_181475188.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HV284_RS24070 () | 8669..9211 | + | 543 | WP_181475189.1 | hypothetical protein | VF |
| HV284_RS24075 () | 9268..11670 | + | 2403 | WP_181475190.1 | Outer membrane usher protein YraJ | VF |
| HV284_RS24080 () | 11663..12439 | + | 777 | WP_181475191.1 | Chaperone protein FaeE | VF |
| HV284_RS24085 () | 12474..12965 | + | 492 | WP_181475192.1 | hypothetical protein | VF |
| HV284_RS24090 () | 13202..14038 | + | 837 | WP_181475193.1 | K88 fimbrial protein AB | VF |
| HV284_RS24095 () | 14195..14992 | + | 798 | WP_181475207.1 | hypothetical protein | VF |
| HV284_RS24100 () | 15023..15787 | + | 765 | WP_181475194.1 | hypothetical protein | VF |
| HV284_RS24105 () | 15804..16577 | + | 774 | WP_181475195.1 | hypothetical protein | VF |
| HV284_RS24110 () | 16651..17289 | + | 639 | WP_181475196.1 | hypothetical protein | - |
| HV284_RS24115 () | 17312..17521 | - | 210 | Protein_23 | IS256 family transposase IS1414 | Transposase |
| HV284_RS24120 () | 17546..18100 | - | 555 | WP_181475165.1 | hypothetical protein | - |
| HV284_RS24125 () | 18113..18751 | - | 639 | WP_097468753.1 | DsbA family protein | - |
| HV284_RS24130 () | 18790..19005 | - | 216 | WP_126510074.1 | hypothetical protein | VF |
| HV284_RS24135 () | 19029..20024 | - | 996 | WP_181475197.1 | hypothetical protein | - |
| HV284_RS24140 () | 20075..20458 | - | 384 | WP_033555904.1 | hypothetical protein | - |
| HV284_RS24145 () | 20667..21206 | - | 540 | WP_181474090.1 | Fimbrial adapter PapF | VF |
| HV284_RS24150 () | 21203..22543 | - | 1341 | WP_181474091.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| HV284_RS24155 () | 22565..23098 | - | 534 | WP_157945708.1 | Fimbrial protein PapE | VF |
| HV284_RS24160 () | 23117..23665 | - | 549 | WP_181474092.1 | Fimbrial adapter PapK | VF |
| HV284_RS24165 () | 23683..24270 | - | 588 | WP_137491257.1 | hypothetical protein | VF |
| HV284_RS24170 () | 24306..25037 | - | 732 | WP_021572443.1 | Chaperone protein PapD | VF |
| HV284_RS24175 () | 25166..27673 | - | 2508 | WP_170898846.1 | Outer membrane usher protein PapC | VF |
| HV284_RS24180 () | 27830..28417 | - | 588 | WP_033555781.1 | PAP fimbrial minor pilin protein | VF |
| HV284_RS24185 () | 28499..29023 | - | 525 | WP_181475208.1 | Pap fimbrial major pilin protein | VF |
| HV284_RS24190 () | 29269..29577 | - | 309 | WP_181475198.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HV284_RS24195 () | 30186..32634 | - | 2449 | Protein_39 | Tn3 family transposase ISPsy42 | Transposase |
| HV284_RS24200 () | 32909..33160 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HV284_RS24205 () | 33157..33444 | + | 288 | WP_134901167.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HV284_RS24210 () | 33636..33755 | + | 120 | Protein_42 | helix-turn-helix transcriptional regulator | - |
| HV284_RS24215 () | 33898..34449 | - | 552 | WP_052980227.1 | plasmid stability family protein | - |
| HV284_RS24220 () | 34461..35432 | - | 972 | WP_163516419.1 | plasmid stabilization protein | - |
| HV284_RS24225 () | 35597..35893 | + | 297 | WP_181475199.1 | hypothetical protein | - |
| HV284_RS24230 () | 35969..36652 | + | 684 | WP_149505782.1 | DNA methylase | - |
| HV284_RS24235 () | 36653..36874 | + | 222 | WP_001558391.1 | hypothetical protein | - |
| HV284_RS24240 () | 36888..37322 | + | 435 | WP_105279872.1 | DUF1380 family protein | - |
| HV284_RS24245 () | 37849..38151 | + | 303 | WP_001666994.1 | antirestriction protein | - |
| HV284_RS24250 () | 38200..38391 | + | 192 | WP_021548775.1 | hypothetical protein | - |
| HV284_RS24255 () | 39105..39641 | + | 537 | WP_054632281.1 | single-stranded DNA-binding protein | - |
| HV284_RS24260 () | 39697..39930 | + | 234 | WP_001470808.1 | DUF905 domain-containing protein | - |
| HV284_RS24265 () | 39991..41955 | + | 1965 | WP_181475200.1 | ParB/RepB/Spo0J family partition protein | - |
| HV284_RS24270 () | 42024..42458 | + | 435 | WP_170898686.1 | conjugation system SOS inhibitor PsiB | - |
| HV284_RS24275 () | 42455..43174 | + | 720 | WP_181475201.1 | plasmid SOS inhibition protein A | - |
| HV284_RS24280 () | 43174..43692 | + | 519 | WP_105289607.1 | hypothetical protein | - |
| - () | 43668..43816 | + | 149 | NuclAT_0 | - | - |
| - () | 43668..43816 | + | 149 | NuclAT_0 | - | - |
| - () | 43668..43816 | + | 149 | NuclAT_0 | - | - |
| - () | 43668..43816 | + | 149 | NuclAT_0 | - | - |
| HV284_RS24285 () | 43868..44026 | + | 159 | WP_032160373.1 | type I toxin-antitoxin system Hok family toxin | - |
| HV284_RS24290 () | 44642..45142 | + | 501 | WP_105632985.1 | antirestriction protein ArdA | - |
| HV284_RS24295 () | 45895..46137 | + | 243 | WP_061361336.1 | hypothetical protein | - |
| HV284_RS24300 () | 46252..46509 | + | 258 | WP_000174706.1 | hypothetical protein | - |
| HV284_RS24305 () | 46563..47413 | + | 851 | Protein_61 | DUF4942 domain-containing protein | - |
| HV284_RS24310 () | 47458..47628 | - | 171 | WP_123007493.1 | helix-turn-helix domain-containing protein | - |
| HV284_RS24315 () | 48161..48307 | + | 147 | WP_157921632.1 | hypothetical protein | - |
| HV284_RS24320 () | 48447..48839 | - | 393 | WP_097468732.1 | mobilization protein MobC | - |
| HV284_RS24325 () | 49031..49366 | + | 336 | WP_000045231.1 | mobilization protein | - |
| HV284_RS24330 () | 49450..51384 | + | 1935 | WP_181475202.1 | Protein TraI | Relaxase |
| HV284_RS24335 () | 51495..51698 | + | 204 | WP_097468730.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HV284_RS24340 () | 51695..52069 | + | 375 | WP_181475203.1 | PIN domain-containing protein | Toxin Detail |
| HV284_RS24345 () | 52603..52863 | - | 261 | WP_181475209.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HV284_RS24350 () | 52874..53143 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| HV284_RS24355 () | 53340..53774 | - | 435 | Protein_71 | hypothetical protein | - |
| HV284_RS24360 () | 53771..53902 | - | 132 | Protein_72 | transposase | - |
| HV284_RS24365 () | 54664..54987 | + | 324 | WP_097468736.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HV284_RS24370 () | 55326..55844 | + | 519 | WP_097468728.1 | Major MR/P fimbria protein | VF |
| HV284_RS24375 () | 55949..58354 | + | 2406 | WP_181475204.1 | putative outer membrane usher protein ElfC | VF |
| HV284_RS24380 () | 58347..59039 | + | 693 | WP_097468726.1 | Chaperone protein FaeE | VF |
| HV284_RS24385 () | 59026..59562 | + | 537 | WP_181475161.1 | hypothetical protein | - |
| HV284_RS24390 () | 59634..60536 | + | 903 | WP_097468724.1 | hypothetical protein | - |
| HV284_RS24395 () | 60867..62075 | - | 1209 | WP_181475162.1 | IS256 family transposase IS1414 | Transposase |
| HV284_RS24400 () | 62185..62328 | + | 144 | Protein_80 | transposase | - |
| HV284_RS24405 () | 62411..62632 | - | 222 | WP_089576131.1 | DUF2188 domain-containing protein | - |
| HV284_RS24410 () | 62988..63449 | + | 462 | WP_097468836.1 | helix-turn-helix domain-containing protein | - |
| HV284_RS24415 () | 63449..63754 | + | 306 | Protein_83 | hypothetical protein | - |
| HV284_RS24420 () | 64616..64924 | + | 309 | WP_097468837.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HV284_RS24425 () | 65171..65680 | + | 510 | WP_181475110.1 | type 1 fimbrial protein | - |
| HV284_RS24430 () | 65762..66349 | + | 588 | WP_033555781.1 | PAP fimbrial minor pilin protein | VF |
| HV284_RS24435 () | 66506..69013 | + | 2508 | WP_170898846.1 | Outer membrane usher protein PapC | VF |
| HV284_RS24440 () | 69142..69873 | + | 732 | WP_021572443.1 | Chaperone protein PapD | VF |
| HV284_RS24445 () | 69909..70496 | + | 588 | WP_137491257.1 | hypothetical protein | VF |
| HV284_RS24450 () | 70514..71062 | + | 549 | WP_181474092.1 | Fimbrial adapter PapK | VF |
| HV284_RS24455 () | 71081..71614 | + | 534 | WP_157945708.1 | Fimbrial protein PapE | VF |
| HV284_RS24460 () | 71636..72976 | + | 1341 | WP_181474091.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| HV284_RS24465 () | 72973..73512 | + | 540 | WP_181474090.1 | Fimbrial adapter PapF | VF |
| HV284_RS24470 () | 73721..74104 | + | 384 | WP_033555904.1 | hypothetical protein | - |
| HV284_RS24475 () | 74175..75155 | + | 981 | WP_181475163.1 | hypothetical protein | - |
| HV284_RS24480 () | 75651..76571 | + | 921 | WP_181475164.1 | hypothetical protein | - |
| HV284_RS24485 () | 76595..76810 | + | 216 | WP_126510074.1 | hypothetical protein | VF |
| HV284_RS24490 () | 76849..77487 | + | 639 | WP_097468753.1 | DsbA family protein | - |
| HV284_RS24495 () | 77500..78054 | + | 555 | WP_181475165.1 | hypothetical protein | - |
| HV284_RS24500 () | 78696..79190 | + | 495 | WP_181475166.1 | hypothetical protein | - |
| HV284_RS24505 () | 79363..79530 | - | 168 | WP_072016859.1 | YhfL family protein | - |
| HV284_RS24510 () | 79751..82975 | - | 3225 | WP_181475167.1 | Intimin | VF |
| HV284_RS24515 () | 83084..83584 | - | 501 | WP_181475210.1 | Phospholipase D | VF |
| HV284_RS24520 () | 83614..85830 | - | 2217 | Protein_104 | hypothetical protein | VF |
| HV284_RS24525 () | 85820..86740 | - | 921 | WP_181475168.1 | hypothetical protein | - |
| HV284_RS24530 () | 86750..88123 | - | 1374 | WP_181475169.1 | conjugal transfer protein TrbA | - |
| HV284_RS24535 () | 88410..88547 | - | 138 | WP_181475170.1 | Hok/Gef family protein | - |
| HV284_RS24540 () | 88907..89560 | - | 654 | WP_181475171.1 | DNA primase | - |
| HV284_RS24545 () | 89599..89955 | - | 357 | WP_107135981.1 | hypothetical protein | - |
| HV284_RS24550 () | 90209..90409 | - | 201 | WP_001041190.1 | hemolysin expression modulator Hha | - |
| HV284_RS24555 () | 91148..91561 | - | 414 | WP_181475211.1 | hypothetical protein | - |
| HV284_RS24560 () | 91724..93877 | - | 2154 | WP_181475172.1 | DotA/TraY family protein | - |
| HV284_RS24565 () | 93961..94434 | - | 474 | WP_181475173.1 | hypothetical protein | - |
| HV284_RS24570 () | 94957..95250 | - | 294 | WP_063848353.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV284_RS24575 () | 95250..95522 | - | 273 | WP_063848352.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| HV284_RS24580 () | 95659..95805 | - | 147 | WP_181475174.1 | hypothetical protein | - |
| HV284_RS24585 () | 95950..96480 | - | 531 | WP_163516558.1 | conjugal transfer protein TraX | - |
| HV284_RS24590 () | 96477..97697 | - | 1221 | WP_001039317.1 | conjugal transfer protein TraW | - |
| HV284_RS24595 () | 97721..100777 | - | 3057 | WP_181475175.1 | hypothetical protein | VF |
| HV284_RS24600 () | 100781..101392 | - | 612 | WP_181475176.1 | hypothetical protein | - |
| HV284_RS24605 () | 101410..101655 | - | 246 | WP_181475177.1 | hypothetical protein | - |
| HV284_RS24610 () | 101711..102118 | - | 408 | WP_001059622.1 | hypothetical protein | - |
| HV284_RS24615 () | 102150..102680 | - | 531 | WP_000367712.1 | conjugal transfer protein TraQ | - |
| HV284_RS24620 () | 102685..103386 | - | 702 | WP_105289550.1 | conjugal transfer protein TraP | - |
| HV284_RS24625 () | 103387..104580 | - | 1194 | WP_181475178.1 | hypothetical protein | VF |
| HV284_RS24630 () | 104583..105644 | - | 1062 | WP_181475179.1 | conjugal transfer protein TraN | - |
| HV284_RS24635 () | 105641..106312 | - | 672 | WP_097314225.1 | hypothetical protein | VF |
| HV284_RS24640 () | 106332..106811 | - | 480 | WP_105289547.1 | hypothetical protein | - |
| HV284_RS24645 () | 106826..110437 | - | 3612 | WP_181475180.1 | hypothetical protein | - |
| HV284_RS24650 () | 110455..110715 | - | 261 | WP_050939877.1 | IcmT/TraK family protein | - |
| HV284_RS24655 () | 110708..111880 | - | 1173 | WP_176559148.1 | Twitching mobility protein | VF |
| HV284_RS24660 () | 111886..112668 | - | 783 | WP_181475181.1 | hypothetical protein | VF |
| HV284_RS24665 () | 112665..113090 | - | 426 | WP_181475182.1 | DotD/TraH family lipoprotein | - |
| HV284_RS24670 () | 113117..113587 | - | 471 | WP_157917732.1 | hypothetical protein | VF |
| HV284_RS24675 () | 113587..114084 | - | 498 | WP_181475183.1 | hypothetical protein | - |
| HV284_RS24680 () | 114094..114336 | - | 243 | WP_105289541.1 | hypothetical protein | - |
| HV284_RS24685 () | 114475..114675 | - | 201 | WP_105289540.1 | hypothetical protein | - |
| HV284_RS24690 () | 114665..115342 | - | 678 | WP_181475184.1 | DUF2913 family protein | - |
| HV284_RS24695 () | 115440..115952 | - | 513 | WP_105289538.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|