NZ_CP0549791..157162

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 157162 bp
Accession: NZ_CP054979        Location: 1..157162         Organism: Shigella flexneri strain STIN_92       Replicon: plasmid unnamed2


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HUZ60_RS24490 (1) 1..978 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
HUZ60_RS24495 (1263) 1263..2003 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
HUZ60_RS24500 (2124) 2124..2312 - 189 WP_001324033.1 hypothetical protein -
HUZ60_RS24505 (2686) 2686..3588 - 903 WP_001312822.1 hypothetical protein VF
HUZ60_RS24510 (3657) 3657..4766 - 1110 WP_000771475.1 SDR family oxidoreductase -
HUZ60_RS24515 (5199) 5199..6152 - 954 WP_000280980.1 Protease 7 VF
HUZ60_RS24520 (6256) 6256..6645 + 390 WP_032145261.1 hypothetical protein -
HUZ60_RS24525 (7449) 7449..7628 - 180 Protein_7 integrase core domain-containing protein -
HUZ60_RS24530 (7767) 7767..8966 + 1200 Protein_8 IS3 family transposase IS629 Transposase
HUZ60_RS24535 (9114) 9114..9439 - 326 Protein_9 IS3 family transposase ISLad1 Transposase
HUZ60_RS24540 (9485) 9485..9825 + 341 Protein_10 IS3 family transposase -
HUZ60_RS24545 (10420) 10420..11607 + 1188 WP_000928804.1 efflux RND transporter periplasmic adaptor subunit -
HUZ60_RS24550 (11604) 11604..13544 + 1941 WP_000733250.1 Macrolide export ATP-binding/permease protein MacB VF
HUZ60_RS24555 (13548) 13548..14918 + 1371 WP_001312828.1 efflux transporter outer membrane subunit -
HUZ60_RS24560 (15392) 15392..15586 + 195 Protein_14 IS200/IS605-like element IS200C family transposase -
HUZ60_RS24565 (15715) 15715..16656 - 942 WP_000974762.1 hypothetical protein -
HUZ60_RS24570 (16891) 16891..18280 - 1390 Protein_16 ISNCY family transposase ISKpn21 Transposase
HUZ60_RS24575 (18590) 18590..18739 - 150 Protein_17 IS3 family transposase IS2 Transposase
HUZ60_RS24580 (18917) 18917..20110 - 1194 WP_000450494.1 GTP-binding protein -
HUZ60_RS24585 (21352) 21352..22089 - 738 Protein_19 IS3 family transposase IS2 Transposase
HUZ60_RS24590 (22142) 22142..23304 + 1163 WP_085947598.1 IS3 family transposase ISEc17 Transposase
HUZ60_RS24595 (23321) 23321..23841 - 521 Protein_21 IS3 family transposase IS2 Transposase
HUZ60_RS24600 (24466) 24466..24759 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
HUZ60_RS24610 (24843) 24843..24991 - 149 Protein_23 Rz1 family lipoprotein -
HUZ60_RS24615 (24948) 24948..25055 - 108 Protein_24 lysis system i-spanin subunit Rz -
HUZ60_RS24620 (25570) 25570..26594 + 1025 Protein_25 integrase core domain-containing protein -
HUZ60_RS24625 (27905) 27905..29020 + 1116 WP_001318220.1 Elloramycin glycosyltransferase ElmGT VF
HUZ60_RS24630 (29160) 29160..32819 + 3660 WP_001389363.1 Multidrug efflux ATP-binding/permease protein VF
HUZ60_RS24635 (32923) 32923..34152 + 1230 WP_000933678.1 Enterochelin esterase VF
HUZ60_RS24640 (34237) 34237..35193 + 957 WP_000271274.1 Ferri-bacillibactin esterase BesA VF
HUZ60_RS24645 (35238) 35238..37415 - 2178 WP_001222185.1 Ferric enterobactin receptor VF
HUZ60_RS24650 (38281) 38281..39315 - 1035 WP_001190234.1 3-deoxy-7-phosphoheptulonate synthase -
HUZ60_RS24655 (39496) 39496..39797 + 302 Protein_32 hypothetical protein -
HUZ60_RS24660 (39875) 39875..40168 - 294 WP_000269327.1 DUF6404 family protein -
HUZ60_RS24665 (40336) 40336..40461 - 126 Protein_34 type II toxin-antitoxin system toxin YacB -
HUZ60_RS24670 (40461) 40461..40729 - 269 Protein_35 type II toxin-antitoxin system antitoxin YacA -
HUZ60_RS24675 (41340) 41340..42614 + 1275 WP_000489609.1 HlyD family secretion protein -
HUZ60_RS24680 (42607) 42607..44703 + 2097 WP_000184924.1 microcin H47 export transporter peptidase/ATP-binding subunit MchF -
HUZ60_RS24685 (44873) 44873..45184 - 312 WP_001259758.1 colicin V -
HUZ60_RS24690 (45162) 45162..45398 - 237 WP_001323890.1 colicin V immunity protein -
HUZ60_RS24695 (45517) 45517..45960 + 444 WP_001323891.1 dehydrogenase -
HUZ60_RS24700 (45932) 45932..46336 + 405 WP_001389361.1 hypothetical protein -
HUZ60_RS24705 (46338) 46338..46607 + 270 WP_000379710.1 SemiSWEET transporter -
HUZ60_RS24710 (46604) 46604..47584 + 981 WP_001017346.1 NAD(P)-binding domain-containing protein -
HUZ60_RS24715 (47660) 47660..48040 + 381 WP_001171523.1 IS66 family transposase ISEc8 Transposase
HUZ60_RS24720 (48037) 48037..48384 + 348 WP_000612591.1 IS66 family transposase ISEc8 Transposase
HUZ60_RS24725 (48434) 48434..49971 + 1538 Protein_46 IS66 family transposase ISEc8 Transposase
HUZ60_RS24730 (50011) 50011..50277 + 267 Protein_47 Tn3 family transposase TnpR_TnEc1 Transposase
HUZ60_RS24735 (50369) 50369..51073 + 705 Protein_48 IS110 family transposase IS4321R Transposase
HUZ60_RS24740 (51111) 51111..52692 - 1582 Protein_49 IS66 family transposase ISEc22 Transposase
HUZ60_RS24745 (52741) 52741..53088 - 348 WP_000612626.1 IS66 family transposase ISKpn24 Transposase
HUZ60_RS24750 (53085) 53085..53489 - 405 WP_000839179.1 IS66 family transposase ISEc22 Transposase
HUZ60_RS24755 (53573) 53573..53878 + 306 Protein_52 transposase -
HUZ60_RS24760 (54156) 54156..54548 - 393 Protein_53 peptide deformylase -
HUZ60_RS24765 (54657) 54657..58790 - 4134 WP_001080137.1 Temperature-sensitive hemagglutinin tsh autotransporter VF
HUZ60_RS24770 (58961) 58961..59152 + 192 Protein_55 IS91 family transposase -
HUZ60_RS24780 (59431) 59431..59688 + 258 Protein_56 IS3 family transposase IS911 Transposase
HUZ60_RS24785 (59756) 59756..60907 + 1152 WP_001442799.1 IS30 family transposase IS30D Transposase
HUZ60_RS24790 (61029) 61029..61394 + 366 WP_000124098.1 hypothetical protein -
HUZ60_RS24795 (61394) 61394..62509 + 1116 Protein_59 IS91 family transposase IS91 Transposase
HUZ60_RS24800 (62690) 62690..63034 - 345 WP_001553768.1 hypothetical protein -
HUZ60_RS24805 (63892) 63892..65406 - 1515 Protein_61 Tn3 family transposase TnpA_TnAs1 Transposase
HUZ60_RS24810 (65472) 65472..66176 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ60_RS24815 (66227) 66227..66397 - 171 Protein_63 recombinase family protein -
HUZ60_RS24820 (66561) 66561..69566 + 3006 WP_001143760.1 Tn3 family transposase TnpA_Tn3 Transposase
HUZ60_RS24825 (69599) 69599..69964 - 366 Protein_65 plasmid replication initiator RepA -
HUZ60_RS24830 (69957) 69957..70439 - 483 WP_001273588.1 hypothetical protein -
HUZ60_RS24835 (70432) 70432..70479 - 48 WP_229471593.1 hypothetical protein -
HUZ60_RS24840 (70470) 70470..70721 + 252 WP_223195197.1 replication protein RepA -
HUZ60_RS24845 (70738) 70738..70995 - 258 WP_000083845.1 replication regulatory protein RepA -
HUZ60_RS24850 (71279) 71279..71428 - 150 WP_239636836.1 Hok/Gef family protein Toxin Detail
- (71472) 71472..71533 + 62 NuclAT_1 - Antitoxin Detail
- (71472) 71472..71533 + 62 NuclAT_1 - Antitoxin Detail
- (71472) 71472..71533 + 62 NuclAT_1 - Antitoxin Detail
- (71472) 71472..71533 + 62 NuclAT_1 - Antitoxin Detail
HUZ60_RS24855 (71789) 71789..71863 - 75 Protein_71 endonuclease -
HUZ60_RS24860 (72109) 72109..72321 - 213 WP_001299730.1 ANR family transcriptional regulator -
HUZ60_RS24865 (72457) 72457..73017 - 561 WP_000139315.1 fertility inhibition protein FinO -
HUZ60_RS24870 (73120) 73120..73980 - 861 WP_000704513.1 putative protein YcjY VF
HUZ60_RS24875 (74039) 74039..74785 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
HUZ60_RS24880 (74805) 74805..80075 - 5271 WP_239636838.1 Multifunctional conjugation protein TraI Relaxase
HUZ60_RS24885 (80157) 80157..80384 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
HUZ60_RS24890 (80384) 80384..80782 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
HUZ60_RS24895 (80791) 80791..82944 - 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
HUZ60_RS24900 (83197) 83197..83928 - 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
HUZ60_RS24905 (83960) 83960..84457 - 498 WP_000605857.1 entry exclusion protein -
HUZ60_RS24910 (84473) 84473..87295 - 2823 WP_001007018.1 conjugal transfer mating-pair stabilization protein TraG -
HUZ60_RS24915 (87292) 87292..88665 - 1374 WP_001517790.1 conjugal transfer pilus assembly protein TraH -
HUZ60_RS24920 (88665) 88665..89045 - 381 WP_001389370.1 F-type conjugal transfer protein TrbF -
HUZ60_RS24925 (89032) 89032..89373 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
HUZ60_RS24930 (89303) 89303..89848 - 546 WP_000059851.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
HUZ60_RS24935 (89835) 89835..90119 - 285 WP_000624109.1 type-F conjugative transfer system pilin chaperone TraQ -
HUZ60_RS24940 (90200) 90200..90514 + 315 WP_001324103.1 hypothetical protein -
HUZ60_RS24945 (90516) 90516..90863 - 348 WP_001287910.1 conjugal transfer protein TrbA -
HUZ60_RS24950 (90879) 90879..91622 - 744 WP_001030377.1 type-F conjugative transfer system pilin assembly protein TraF -
HUZ60_RS24955 (91615) 91615..91872 - 258 WP_000864318.1 conjugal transfer protein TrbE -
HUZ60_RS24960 (91899) 91899..93707 - 1809 WP_000821838.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
HUZ60_RS24965 (93704) 93704..94342 - 639 WP_000777695.1 type-F conjugative transfer system pilin assembly protein TrbC -
HUZ60_RS24970 (94351) 94351..95343 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
HUZ60_RS24975 (95340) 95340..95972 - 633 WP_001203717.1 type-F conjugative transfer system protein TraW -
HUZ60_RS24980 (95969) 95969..96355 - 387 WP_000099691.1 type-F conjugative transfer system protein TrbI -
HUZ60_RS24985 (96352) 96352..98979 - 2628 WP_001064245.1 type IV secretion system protein TraC -
HUZ60_RS24990 (99139) 99139..99360 - 222 WP_001278689.1 conjugal transfer protein TraR -
HUZ60_RS24995 (99495) 99495..100010 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
HUZ60_RS25000 (100007) 100007..100258 - 252 WP_001038342.1 conjugal transfer protein TrbG -
HUZ60_RS25005 (100270) 100270..100467 - 198 WP_024179215.1 conjugal transfer protein TrbD -
HUZ60_RS25010 (100454) 100454..101044 - 591 WP_000002787.1 conjugal transfer pilus-stabilizing protein TraP -
HUZ60_RS25015 (101034) 101034..102461 - 1428 WP_000146684.1 F-type conjugal transfer pilus assembly protein TraB -
HUZ60_RS25020 (102461) 102461..103189 - 729 WP_001230813.1 type-F conjugative transfer system secretin TraK -
HUZ60_RS25025 (103176) 103176..103742 - 567 WP_000399790.1 type IV conjugative transfer system protein TraE -
HUZ60_RS25030 (103764) 103764..104075 - 312 WP_239636833.1 type IV conjugative transfer system protein TraL -
HUZ60_RS25035 (104090) 104090..104455 - 366 WP_000340282.1 type IV conjugative transfer system pilin TraA -
HUZ60_RS25040 (104498) 104498..104713 - 216 WP_001352842.1 conjugal transfer relaxosome protein TraY -
HUZ60_RS25045 (104849) 104849..105496 - 648 WP_000332520.1 conjugal transfer transcriptional regulator TraJ -
HUZ60_RS25050 (105688) 105688..106071 - 384 WP_001063020.1 conjugal transfer relaxosome DNA-binding protein TraM -
HUZ60_RS25055 (106423) 106423..107013 + 591 WP_166494936.1 hypothetical protein VF
HUZ60_RS25060 (107308) 107308..108129 - 822 WP_001234475.1 DUF932 domain-containing protein -
HUZ60_RS25065 (108248) 108248..108535 - 288 WP_000107546.1 hypothetical protein -
HUZ60_RS25070 (108560) 108560..108766 - 207 WP_000547965.1 hypothetical protein -
HUZ60_RS25075 (108836) 108836..109132 + 297 Protein_115 hypothetical protein -
HUZ60_RS25080 (109433) 109433..109558 - 126 WP_096937776.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
HUZ60_RS25085 (109500) 109500..109649 - 150 Protein_117 DUF5431 family protein -
- (109656) 109656..109854 - 199 NuclAT_0 - Antitoxin Detail
- (109656) 109656..109854 - 199 NuclAT_0 - Antitoxin Detail
- (109656) 109656..109854 - 199 NuclAT_0 - Antitoxin Detail
- (109656) 109656..109854 - 199 NuclAT_0 - Antitoxin Detail
HUZ60_RS25090 (109823) 109823..110585 - 763 Protein_118 plasmid SOS inhibition protein A -
HUZ60_RS25095 (110582) 110582..111016 - 435 WP_000845928.1 conjugation system SOS inhibitor PsiB -
HUZ60_RS25100 (111071) 111071..113029 - 1959 WP_029487628.1 ParB/RepB/Spo0J family partition protein -
HUZ60_RS25105 (113095) 113095..113328 - 234 WP_000005990.1 DUF905 family protein -
HUZ60_RS25110 (113385) 113385..113924 - 540 WP_000290801.1 single-stranded DNA-binding protein -
HUZ60_RS25115 (114721) 114721..114912 - 192 WP_001027495.1 hypothetical protein -
HUZ60_RS25120 (114909) 114909..115331 - 423 WP_000271685.1 DUF1380 family protein -
HUZ60_RS25125 (115378) 115378..115803 - 426 WP_001198918.1 antirestriction protein -
HUZ60_RS25130 (116216) 116216..116992 - 777 WP_001005035.1 hypothetical protein -
HUZ60_RS25135 (117038) 117038..117592 - 555 WP_077248347.1 DUF1380 family protein -
HUZ60_RS25140 (117486) 117486..117707 - 222 WP_001104870.1 hypothetical protein -
HUZ60_RS25145 (117708) 117708..118391 - 684 WP_000085939.1 DNA methylase -
HUZ60_RS25150 (118468) 118468..118773 - 306 WP_010891292.1 hypothetical protein -
HUZ60_RS25155 (118777) 118777..119678 - 902 Protein_131 DUF1281 domain-containing protein -
HUZ60_RS25160 (120416) 120416..121387 - 972 WP_000817035.1 ParB/RepB/Spo0J family plasmid partition protein -
HUZ60_RS25165 (121387) 121387..122553 - 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
HUZ60_RS25170 (123141) 123141..123896 - 756 WP_000852146.1 replication initiation protein RepE -
HUZ60_RS25175 (124648) 124648..125454 - 807 WP_000016982.1 site-specific integrase -
HUZ60_RS25180 (125455) 125455..125760 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
HUZ60_RS25185 (125762) 125762..125980 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
HUZ60_RS25190 (126548) 126548..127060 + 513 WP_000151784.1 hypothetical protein -
HUZ60_RS25195 (127094) 127094..128227 - 1134 WP_000545984.1 DUF3800 domain-containing protein -
HUZ60_RS25200 (128394) 128394..129167 - 774 WP_000905949.1 hypothetical protein -
HUZ60_RS25205 (129180) 129180..129680 - 501 WP_000528932.1 HEPN family nuclease -
HUZ60_RS25210 (129945) 129945..130175 + 231 WP_001261278.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
HUZ60_RS25215 (130172) 130172..130588 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
HUZ60_RS25220 (130633) 130633..134427 - 3795 WP_001144731.1 hypothetical protein -
HUZ60_RS25225 (134808) 134808..135038 + 231 WP_001261286.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
HUZ60_RS25230 (135035) 135035..135451 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
HUZ60_RS25235 (135526) 135526..137091 + 1566 WP_001128474.1 AAA family ATPase -
HUZ60_RS25240 (137076) 137076..138098 + 1023 WP_000361402.1 helicase UvrD -
HUZ60_RS25250 (139429) 139429..141624 - 2196 WP_169254050.1 Ferric aerobactin receptor VF
HUZ60_RS25255 (141656) 141656..142989 - 1334 Protein_151 L-lysine N6-monooxygenase VF
HUZ60_RS25260 (142986) 142986..144728 - 1743 WP_001015721.1 Aerobactin synthase VF
HUZ60_RS25265 (144728) 144728..145675 - 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase VF
HUZ60_RS25270 (145676) 145676..147400 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
HUZ60_RS25275 (147536) 147536..148729 + 1194 WP_000095526.1 MFS transporter -
HUZ60_RS25280 (149109) 149109..149489 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
HUZ60_RS25285 (149830) 149830..150243 - 414 Protein_157 phosphopyruvate hydratase -
HUZ60_RS25290 (150732) 150732..151589 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
HUZ60_RS25295 (151586) 151586..152443 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
HUZ60_RS25300 (152440) 152440..153267 - 828 WP_000983710.1 Iron(3+)-hydroxamate import ATP-binding protein FhuC VF
HUZ60_RS25305 (153267) 153267..154181 - 915 WP_000949004.1 Putative metal ABC transporter substrate-binding protein Hpf VF
HUZ60_RS25310 (154537) 154537..155234 + 698 WP_223155668.1 IS1 family transposase IS1A Transposase
HUZ60_RS25315 (155414) 155414..155927 - 514 Protein_163 DUF4113 domain-containing protein -
HUZ60_RS25320 (155988) 155988..156092 - 105 Protein_164 AAA family ATPase -
HUZ60_RS25325 (156094) 156094..156417 - 324 Protein_165 IS21 family transposase IS21 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance