MGE detailed information
MGE type: Conjugative plasmid MGE length: 148443 bp
Accession: NZ_CP054369 Location: 1..148443 Organism: Escherichia coli strain SCU-115 Replicon: plasmid pSCU-115-1
Accession: NZ_CP054369 Location: 1..148443 Organism: Escherichia coli strain SCU-115 Replicon: plasmid pSCU-115-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE48_RS23565 () | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HPE48_RS23570 () | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| HPE48_RS23575 () | 3232..3510 | + | 279 | WP_001523382.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HPE48_RS23580 () | 3565..4092 | + | 528 | WP_001523383.1 | hypothetical protein | VF |
| HPE48_RS23585 () | 4173..4757 | + | 585 | WP_001523384.1 | PAP fimbrial minor pilin protein | VF |
| HPE48_RS23590 () | 4904..7414 | + | 2511 | WP_024193368.1 | Outer membrane usher protein PapC | VF |
| HPE48_RS23595 () | 7483..8214 | + | 732 | WP_174144231.1 | Chaperone protein PapD | VF |
| HPE48_RS23600 () | 8251..8838 | + | 588 | WP_001523388.1 | hypothetical protein | VF |
| HPE48_RS23605 () | 8865..9401 | + | 537 | WP_024188653.1 | Fimbrial adapter PapK | VF |
| HPE48_RS23610 () | 9421..9942 | + | 522 | WP_001523392.1 | Fimbrial protein PapE | VF |
| HPE48_RS23615 () | 9965..10525 | + | 561 | WP_001523393.1 | Fimbrial adapter PapF | VF |
| HPE48_RS23620 () | 10615..11595 | + | 981 | WP_001523394.1 | hypothetical protein | - |
| HPE48_RS23625 () | 11861..12681 | + | 821 | Protein_12 | polysaccharide deacetylase family protein | - |
| HPE48_RS23630 () | 12684..12896 | + | 213 | WP_153782243.1 | hypothetical protein | - |
| HPE48_RS23635 () | 13416..17324 | + | 3909 | WP_001523396.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| HPE48_RS23640 () | 17492..18001 | + | 510 | WP_001523397.1 | Leukotoxin-activating lysine-acyltransferase LtxC | VF |
| HPE48_RS23645 () | 17988..20588 | + | 2601 | WP_001523398.1 | Leukotoxin | VF |
| HPE48_RS23650 () | 20648..22759 | + | 2112 | WP_001523399.1 | Leukotoxin export ATP-binding protein LtxB | VF |
| HPE48_RS23655 () | 22773..24185 | + | 1413 | WP_001523401.1 | Leukotoxin export protein LtxD | VF |
| HPE48_RS23660 () | 25112..25651 | + | 540 | WP_001523402.1 | chorismate mutase | - |
| HPE48_RS23665 () | 26334..27236 | - | 903 | WP_024193369.1 | hypothetical protein | VF |
| HPE48_RS23670 () | 27326..28435 | - | 1110 | WP_174144232.1 | SDR family oxidoreductase | - |
| HPE48_RS23675 () | 28975..29925 | + | 951 | WP_001523409.1 | Protease 7 | VF |
| HPE48_RS23680 () | 30037..31224 | + | 1188 | WP_001523410.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HPE48_RS23685 () | 31221..33161 | + | 1941 | WP_001523412.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| HPE48_RS23690 () | 33165..34535 | + | 1371 | WP_032144220.1 | Toxin and drug export protein A | VF |
| HPE48_RS23695 () | 35072..35649 | - | 578 | Protein_26 | ISNCY family transposase | - |
| HPE48_RS23700 () | 36188..37486 | - | 1299 | Protein_27 | ISNCY family transposase | - |
| HPE48_RS23705 () | 37790..37939 | - | 150 | Protein_28 | IS3 family transposase IS2 | Transposase |
| HPE48_RS23710 () | 38117..39310 | - | 1194 | WP_000450492.1 | GTP-binding protein | - |
| HPE48_RS23715 () | 41070..41363 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| HPE48_RS23720 () | 41421..41675 | - | 255 | WP_077543370.1 | lysis system i-spanin subunit Rz | - |
| HPE48_RS23725 () | 42175..43273 | + | 1099 | Protein_32 | IS481 family transposase ISKpn28 | Transposase |
| HPE48_RS23730 () | 44509..45624 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| HPE48_RS23735 () | 45764..49423 | + | 3660 | WP_001523422.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HPE48_RS23740 () | 49527..50756 | + | 1230 | WP_001523423.1 | Enterochelin esterase | VF |
| HPE48_RS23745 () | 50841..51797 | + | 957 | WP_000271274.1 | Ferri-bacillibactin esterase BesA | VF |
| HPE48_RS23750 () | 51842..54019 | - | 2178 | WP_001523424.1 | Ferric enterobactin receptor | VF |
| HPE48_RS23755 () | 54323..54583 | - | 261 | WP_000076221.1 | hypothetical protein | - |
| HPE48_RS23760 () | 55006..55229 | + | 224 | Protein_39 | hypothetical protein | - |
| HPE48_RS23765 () | 55315..55721 | - | 407 | Protein_40 | IS3 family transposase ISEc16 | Transposase |
| HPE48_RS23770 () | 56044..57528 | - | 1485 | WP_001579359.1 | alpha/beta hydrolase | - |
| HPE48_RS23775 () | 57713..58663 | - | 951 | WP_001579360.1 | Protease 7 | VF |
| HPE48_RS23780 () | 59409..60595 | + | 1187 | Protein_43 | IS91 family transposase ISEc37 | Transposase |
| HPE48_RS23785 () | 60916..61563 | - | 648 | WP_001523433.1 | hypothetical protein | - |
| HPE48_RS23790 () | 61633..61983 | - | 351 | WP_001523434.1 | hypothetical protein | - |
| HPE48_RS23795 () | 62563..62824 | + | 262 | Protein_46 | hypothetical protein | - |
| HPE48_RS23800 () | 62824..63414 | + | 591 | WP_001523436.1 | hypothetical protein | - |
| HPE48_RS23805 () | 63797..64972 | - | 1176 | WP_174144233.1 | hypothetical protein | - |
| HPE48_RS23810 () | 65020..65535 | - | 516 | WP_021516775.1 | type 1 fimbrial protein | - |
| HPE48_RS23815 () | 65602..66288 | - | 687 | WP_001523439.1 | molecular chaperone | - |
| HPE48_RS23820 () | 66279..68786 | - | 2508 | WP_001523440.1 | Outer membrane usher protein SfmD | VF |
| HPE48_RS23825 () | 68815..69147 | - | 333 | WP_001523441.1 | fimbria/pilus periplasmic chaperone | - |
| HPE48_RS23830 () | 69233..69937 | - | 705 | WP_021516773.1 | molecular chaperone | - |
| HPE48_RS23835 () | 70013..70591 | - | 579 | WP_001523443.1 | S-fimbrial protein subunit SfaA | VF |
| HPE48_RS23840 () | 71075..71638 | - | 564 | WP_001523444.1 | Tyrosine recombinase XerD | VF |
| HPE48_RS23845 () | 71862..72608 | + | 747 | WP_001523445.1 | Tyrosine recombinase XerD | VF |
| HPE48_RS23850 () | 72989..73447 | + | 459 | Protein_57 | IS66 family transposase IS679 | Transposase |
| HPE48_RS23855 () | 73533..74348 | - | 816 | WP_001523447.1 | hypothetical protein | - |
| HPE48_RS23860 () | 74657..74917 | + | 261 | WP_001523449.1 | hypothetical protein | - |
| HPE48_RS23865 () | 74914..75504 | + | 591 | WP_001523450.1 | hypothetical protein | - |
| HPE48_RS23870 () | 76535..77644 | + | 1110 | WP_000737315.1 | porin OmpC | - |
| HPE48_RS23875 () | 77808..78572 | - | 765 | WP_001523453.1 | helix-turn-helix domain-containing protein | - |
| HPE48_RS23880 () | 79575..80168 | + | 594 | WP_001523457.1 | hypothetical protein | - |
| HPE48_RS23885 () | 80448..81035 | - | 588 | WP_024189343.1 | serine acetyltransferase | - |
| HPE48_RS23890 () | 81802..82347 | - | 546 | WP_001523466.1 | hypothetical protein | - |
| HPE48_RS23895 () | 82357..82644 | - | 288 | WP_001523468.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HPE48_RS23900 () | 82641..82892 | - | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HPE48_RS23905 () | 82979..83146 | - | 168 | WP_032146603.1 | hypothetical protein | - |
| HPE48_RS23910 () | 83848..84705 | - | 858 | WP_001523472.1 | incFII family plasmid replication initiator RepA | - |
| HPE48_RS23915 () | 84698..85180 | - | 483 | WP_001523473.1 | hypothetical protein | - |
| HPE48_RS23920 () | 85173..85247 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| HPE48_RS23925 () | 85481..85738 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HPE48_RS23930 () | 86022..86228 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 86215..86276 | + | 62 | NuclAT_1 | - | - |
| - () | 86215..86276 | + | 62 | NuclAT_1 | - | - |
| - () | 86215..86276 | + | 62 | NuclAT_1 | - | - |
| - () | 86215..86276 | + | 62 | NuclAT_1 | - | - |
| HPE48_RS23935 () | 86859..87071 | - | 213 | WP_032084501.1 | hypothetical protein | - |
| HPE48_RS23940 () | 87204..87764 | - | 561 | WP_001523482.1 | fertility inhibition protein FinO | - |
| HPE48_RS23945 () | 87819..88565 | - | 747 | WP_001523483.1 | conjugal transfer pilus acetylase TraX | - |
| HPE48_RS23950 () | 88585..93855 | - | 5271 | WP_001523485.1 | Multifunctional conjugation protein TraI | Relaxase |
| HPE48_RS23955 () | 93937..94164 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HPE48_RS23960 () | 94164..94562 | + | 399 | WP_000911317.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HPE48_RS23965 () | 94571..96724 | - | 2154 | WP_001523486.1 | type IV conjugative transfer system coupling protein TraD | - |
| HPE48_RS23970 () | 96977..97708 | - | 732 | WP_001523488.1 | complement resistance protein TraT | - |
| HPE48_RS23975 () | 97757..98242 | - | 486 | WP_000605866.1 | hypothetical protein | - |
| HPE48_RS23980 () | 98258..101080 | - | 2823 | WP_001523489.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HPE48_RS23985 () | 101077..102450 | - | 1374 | WP_001523491.1 | conjugal transfer protein TraH | - |
| HPE48_RS23990 () | 102450..102812 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| HPE48_RS23995 () | 102742..103287 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HPE48_RS24000 () | 103274..103558 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HPE48_RS24005 () | 103677..104024 | - | 348 | WP_001287897.1 | conjugal transfer protein TrbA | - |
| HPE48_RS24010 () | 104040..104783 | - | 744 | WP_001523496.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HPE48_RS24015 () | 104776..105033 | - | 258 | WP_000864336.1 | conjugal transfer protein TrbE | - |
| HPE48_RS24020 () | 105060..106868 | - | 1809 | WP_001579363.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HPE48_RS24025 () | 106865..107503 | - | 639 | WP_001523499.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HPE48_RS24030 () | 107512..108504 | - | 993 | WP_001523501.1 | conjugal transfer pilus assembly protein TraU | - |
| HPE48_RS24035 () | 108501..109133 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HPE48_RS24040 () | 109130..109516 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| HPE48_RS24045 () | 109513..112140 | - | 2628 | WP_174144234.1 | type IV secretion system protein TraC | - |
| HPE48_RS24050 () | 112300..112521 | - | 222 | WP_024189340.1 | conjugal transfer protein TraR | - |
| HPE48_RS24055 () | 112656..113171 | - | 516 | WP_001523506.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HPE48_RS24060 () | 113168..113419 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HPE48_RS24065 () | 113431..113661 | - | 231 | WP_001398289.1 | conjugal transfer protein TrbD | - |
| HPE48_RS24070 () | 113615..114205 | - | 591 | WP_001523507.1 | conjugal transfer protein TraP | - |
| HPE48_RS24075 () | 114195..115622 | - | 1428 | WP_001523508.1 | conjugal transfer protein TraB | - |
| HPE48_RS24080 () | 115622..116326 | - | 705 | WP_148713375.1 | type-F conjugative transfer system secretin TraK | - |
| HPE48_RS24085 () | 116337..116903 | - | 567 | WP_000399797.1 | type IV conjugative transfer system protein TraE | - |
| HPE48_RS24090 () | 116925..117236 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HPE48_RS24095 () | 117251..117649 | - | 399 | WP_000340281.1 | type IV conjugative transfer system pilin TraA | - |
| HPE48_RS24100 () | 117692..117907 | - | 216 | WP_000086381.1 | conjugal transfer relaxosome protein TraY | - |
| HPE48_RS24105 () | 118043..118690 | - | 648 | WP_000332519.1 | conjugal transfer transcriptional regulator TraJ | - |
| HPE48_RS24110 () | 118881..119264 | - | 384 | WP_001063021.1 | relaxosome protein TraM | - |
| HPE48_RS24115 () | 119616..120206 | + | 591 | WP_166740857.1 | hypothetical protein | VF |
| HPE48_RS24120 () | 120502..121323 | - | 822 | WP_174144237.1 | DUF945 domain-containing protein | - |
| HPE48_RS24125 () | 121442..121729 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| HPE48_RS24130 () | 121811..122029 | + | 219 | Protein_113 | hypothetical protein | - |
| HPE48_RS24135 () | 122030..122389 | + | 360 | Protein_114 | hypothetical protein | - |
| HPE48_RS24140 () | 122627..122785 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 122850..123048 | - | 199 | NuclAT_0 | - | - |
| - () | 122850..123048 | - | 199 | NuclAT_0 | - | - |
| - () | 122850..123048 | - | 199 | NuclAT_0 | - | - |
| - () | 122850..123048 | - | 199 | NuclAT_0 | - | - |
| HPE48_RS24145 () | 123060..123779 | - | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| HPE48_RS24150 () | 123776..124210 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| HPE48_RS24155 () | 124265..126223 | - | 1959 | WP_021516762.1 | ParB/RepB/Spo0J family partition protein | - |
| HPE48_RS24160 () | 126289..126522 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| HPE48_RS24165 () | 126579..127031 | - | 453 | WP_000290802.1 | single-stranded DNA-binding protein | - |
| HPE48_RS24170 () | 127538..127729 | - | 192 | WP_001027500.1 | hypothetical protein | - |
| HPE48_RS24175 () | 127726..128141 | - | 416 | Protein_122 | DUF1380 family protein | - |
| HPE48_RS24180 () | 128188..128490 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| HPE48_RS24185 () | 128586..129028 | - | 443 | Protein_124 | DUF1472 domain-containing protein | - |
| HPE48_RS24190 () | 129465..130436 | - | 972 | WP_001519995.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HPE48_RS24195 () | 130436..131602 | - | 1167 | WP_001519994.1 | Sporulation initiation inhibitor protein Soj | VF |
| HPE48_RS24200 () | 132065..132262 | - | 198 | Protein_127 | CcdB family protein | - |
| HPE48_RS24205 () | 132384..133142 | + | 759 | Protein_128 | IS21 family transposase | - |
| HPE48_RS24210 () | 133531..133983 | - | 453 | WP_001519992.1 | N-acetyltransferase | - |
| HPE48_RS24215 () | 134136..134525 | + | 390 | Protein_130 | hypothetical protein | - |
| HPE48_RS24220 () | 134545..134892 | - | 348 | Protein_131 | hypothetical protein | - |
| HPE48_RS24225 () | 135021..135356 | + | 336 | WP_021516757.1 | immunity protein | - |
| HPE48_RS24230 () | 135378..137258 | - | 1881 | WP_021516756.1 | colicin 1A | - |
| HPE48_RS24235 () | 137603..137896 | - | 294 | WP_001097404.1 | YqjK-like family protein | - |
| HPE48_RS24240 () | 137893..138294 | - | 402 | WP_001258981.1 | phage holin family protein | - |
| HPE48_RS24245 () | 138378..138731 | - | 354 | WP_000990989.1 | hypothetical protein | - |
| HPE48_RS24250 () | 138803..139051 | - | 249 | WP_000467268.1 | DUF883 family protein | - |
| HPE48_RS24255 () | 139636..139953 | - | 318 | WP_052415664.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HPE48_RS24260 () | 140620..141612 | - | 993 | WP_021516754.1 | hypothetical protein | - |
| HPE48_RS24265 () | 141640..142125 | - | 486 | WP_157920591.1 | Minor fimbrial protein PrsF | VF |
| HPE48_RS24270 () | 142181..142696 | - | 516 | WP_021516753.1 | hypothetical protein | VF |
| HPE48_RS24275 () | 142733..143464 | - | 732 | WP_174144235.1 | Chaperone protein PapD | VF |
| HPE48_RS24280 () | 143533..146043 | - | 2511 | WP_174144236.1 | Outer membrane usher protein PapC | VF |
| HPE48_RS24285 () | 146164..146751 | - | 588 | WP_024008812.1 | PAP fimbrial minor pilin protein | VF |
| HPE48_RS24290 () | 146827..147354 | - | 528 | WP_001045099.1 | Pap fimbrial major pilin protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|