MGE detailed information
MGE type: Prophage MGE length: 62387 bp
Accession: NZ_CP054264 Location: 4377690..4440076 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Accession: NZ_CP054264 Location: 4377690..4440076 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG554_RS20095 (HG554_20090) | 4373031..4375001 | + | 1971 | WP_061405675.1 | calcium-binding protein | - |
| HG554_RS20100 (HG554_20095) | 4375080..4375325 | - | 246 | WP_049587960.1 | hypothetical protein | - |
| HG554_RS28535 | 4375322..4375615 | - | 294 | WP_049587959.1 | hypothetical protein | - |
| HG554_RS20105 (HG554_20100) | 4375689..4375913 | - | 225 | WP_049587957.1 | hypothetical protein | - |
| HG554_RS20110 (HG554_20105) | 4376128..4377615 | - | 1488 | WP_061405677.1 | sialidase family protein | - |
| HG554_RS20115 (HG554_20110) | 4377690..4378220 | - | 531 | WP_049587950.1 | DUF2514 domain-containing protein | - |
| HG554_RS20120 (HG554_20115) | 4378217..4378756 | - | 540 | WP_010954681.1 | glycoside hydrolase family 104 protein | - |
| HG554_RS20125 (HG554_20120) | 4378845..4379213 | + | 369 | WP_061405678.1 | YceK/YidQ family lipoprotein | - |
| HG554_RS20130 (HG554_20125) | 4379158..4379382 | - | 225 | WP_010954682.1 | hypothetical protein | - |
| HG554_RS20135 (HG554_20130) | 4379805..4380569 | - | 765 | WP_010954683.1 | hypothetical protein | - |
| HG554_RS20140 (HG554_20135) | 4380581..4382833 | - | 2253 | WP_010954684.1 | hypothetical protein | - |
| HG554_RS20145 (HG554_20140) | 4382901..4383092 | - | 192 | WP_049587948.1 | hypothetical protein | - |
| HG554_RS20150 (HG554_20145) | 4383095..4383898 | - | 804 | WP_010954685.1 | tail protein | - |
| HG554_RS20155 (HG554_20150) | 4383901..4384545 | - | 645 | WP_010954686.1 | YmfQ family protein | - |
| HG554_RS20160 (HG554_20155) | 4384536..4385579 | - | 1044 | WP_010954687.1 | baseplate J/gp47 family protein | - |
| HG554_RS20165 (HG554_20160) | 4385569..4385955 | - | 387 | WP_010954688.1 | phage GP46 family protein | - |
| HG554_RS20170 (HG554_20165) | 4385952..4386452 | - | 501 | WP_010954689.1 | phage baseplate assembly protein V | - |
| HG554_RS20175 (HG554_20170) | 4386461..4387570 | - | 1110 | WP_010954690.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HG554_RS20180 (HG554_20175) | 4387574..4388836 | - | 1263 | WP_010954691.1 | DNA circularization N-terminal domain-containing protein | - |
| HG554_RS20185 (HG554_20180) | 4388829..4390784 | - | 1956 | WP_010954692.1 | phage tail tape measure protein | - |
| HG554_RS20190 (HG554_20185) | 4390777..4390968 | - | 192 | WP_061405679.1 | hypothetical protein | - |
| HG554_RS20195 (HG554_20190) | 4390914..4391210 | - | 297 | WP_049587943.1 | phage tail assembly protein | - |
| HG554_RS20200 (HG554_20195) | 4391207..4391554 | - | 348 | WP_049587942.1 | phage tail tube protein | - |
| HG554_RS20205 (HG554_20200) | 4391637..4393058 | - | 1422 | WP_010951893.1 | group II intron reverse transcriptase/maturase | - |
| HG554_RS20210 (HG554_20205) | 4393528..4395015 | - | 1488 | WP_010954695.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HG554_RS20215 (HG554_20210) | 4395015..4395218 | - | 204 | WP_010954696.1 | DUF2635 domain-containing protein | - |
| HG554_RS20220 (HG554_20215) | 4395224..4395817 | - | 594 | WP_049587778.1 | hypothetical protein | - |
| HG554_RS20225 (HG554_20220) | 4395847..4396362 | - | 516 | WP_010954699.1 | hypothetical protein | - |
| HG554_RS20230 (HG554_20225) | 4396355..4396729 | - | 375 | WP_010954700.1 | head-tail adaptor protein | - |
| HG554_RS20235 (HG554_20230) | 4396732..4397247 | - | 516 | WP_172835030.1 | hypothetical protein | - |
| HG554_RS20240 (HG554_20235) | 4397286..4397534 | - | 249 | WP_110771832.1 | hypothetical protein | - |
| HG554_RS20245 (HG554_20240) | 4397587..4398900 | - | 1314 | WP_049587776.1 | phage major capsid protein | - |
| HG554_RS20250 (HG554_20245) | 4398962..4399933 | - | 972 | WP_010954704.1 | S49 family peptidase | - |
| HG554_RS20255 (HG554_20250) | 4399930..4401201 | - | 1272 | WP_010954705.1 | phage portal protein | - |
| HG554_RS20260 (HG554_20255) | 4401204..4401392 | - | 189 | WP_010954706.1 | hypothetical protein | - |
| HG554_RS20265 (HG554_20260) | 4401389..4403197 | - | 1809 | WP_010954707.1 | terminase large subunit | - |
| HG554_RS20270 (HG554_20265) | 4403157..4403465 | - | 309 | WP_235436916.1 | phage terminase small subunit P27 family | - |
| HG554_RS20275 (HG554_20270) | 4403760..4404080 | - | 321 | WP_010954709.1 | HNH endonuclease | - |
| HG554_RS20280 (HG554_20275) | 4404084..4404407 | - | 324 | WP_010954710.1 | phage holin, lambda family | - |
| HG554_RS20285 (HG554_20280) | 4404566..4405195 | + | 630 | WP_061405680.1 | hypothetical protein | - |
| HG554_RS20290 (HG554_20285) | 4405344..4405604 | - | 261 | WP_010954712.1 | hypothetical protein | - |
| HG554_RS20295 (HG554_20290) | 4405588..4406259 | - | 672 | WP_010954713.1 | hypothetical protein | - |
| HG554_RS20300 (HG554_20295) | 4406272..4406553 | - | 282 | WP_235436917.1 | hypothetical protein | - |
| HG554_RS20305 (HG554_20300) | 4406589..4407887 | - | 1299 | WP_010954715.1 | hypothetical protein ; Integrase | Integrase |
| HG554_RS20310 (HG554_20305) | 4407884..4408312 | - | 429 | WP_049587773.1 | VRR-NUC domain-containing protein | - |
| HG554_RS20315 (HG554_20310) | 4408309..4408479 | - | 171 | WP_154070660.1 | hypothetical protein | - |
| HG554_RS20320 (HG554_20315) | 4408476..4408772 | - | 297 | WP_010954717.1 | DUF1364 domain-containing protein | - |
| HG554_RS20325 (HG554_20320) | 4408754..4408960 | - | 207 | WP_010954718.1 | hypothetical protein | - |
| HG554_RS20330 (HG554_20325) | 4408960..4410357 | - | 1398 | WP_010954719.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| HG554_RS20335 (HG554_20330) | 4410354..4411184 | - | 831 | WP_010954720.1 | replication protein | - |
| HG554_RS20340 (HG554_20335) | 4411509..4411721 | - | 213 | WP_010954721.1 | YdaS family helix-turn-helix protein | - |
| HG554_RS20345 (HG554_20340) | 4411809..4412456 | + | 648 | WP_010954722.1 | S24 family peptidase | - |
| HG554_RS20350 (HG554_20345) | 4412514..4412927 | + | 414 | WP_010954723.1 | HIRAN domain-containing protein | - |
| HG554_RS20355 (HG554_20350) | 4412971..4413207 | + | 237 | WP_010954724.1 | hypothetical protein | - |
| HG554_RS20360 (HG554_20355) | 4413374..4414366 | + | 993 | WP_049587768.1 | hypothetical protein | - |
| HG554_RS20365 (HG554_20360) | 4414369..4414935 | + | 567 | WP_049587766.1 | hypothetical protein | - |
| HG554_RS20370 (HG554_20365) | 4415103..4415444 | - | 342 | WP_049587764.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HG554_RS20375 (HG554_20370) | 4415444..4415692 | - | 249 | WP_010954726.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HG554_RS20380 (HG554_20375) | 4415842..4416102 | + | 261 | WP_010954727.1 | DUF1654 domain-containing protein | - |
| HG554_RS20385 (HG554_20380) | 4416474..4416683 | + | 210 | WP_049587762.1 | hypothetical protein | - |
| HG554_RS20390 (HG554_20385) | 4417320..4417703 | + | 384 | WP_049587761.1 | helix-turn-helix transcriptional regulator | - |
| HG554_RS20395 (HG554_20390) | 4417723..4417992 | + | 270 | WP_010954732.1 | hypothetical protein | - |
| HG554_RS20400 (HG554_20395) | 4417989..4418447 | + | 459 | WP_010954733.1 | hypothetical protein | - |
| HG554_RS20405 (HG554_20400) | 4418529..4418879 | + | 351 | WP_010954734.1 | hypothetical protein | - |
| HG554_RS20410 (HG554_20405) | 4418893..4419171 | - | 279 | WP_010954735.1 | hypothetical protein | - |
| HG554_RS20415 (HG554_20410) | 4419278..4419829 | + | 552 | WP_049587760.1 | hypothetical protein | - |
| HG554_RS20420 (HG554_20415) | 4419844..4420227 | + | 384 | WP_010954737.1 | hypothetical protein | - |
| HG554_RS20425 (HG554_20420) | 4420295..4421956 | + | 1662 | WP_010954738.1 | DNA cytosine methyltransferase | - |
| HG554_RS20430 (HG554_20425) | 4421965..4422642 | + | 678 | WP_049587756.1 | hypothetical protein | - |
| HG554_RS20435 (HG554_20430) | 4422692..4422991 | - | 300 | WP_049587754.1 | hypothetical protein | - |
| HG554_RS20440 (HG554_20435) | 4423157..4423540 | + | 384 | WP_010954740.1 | hypothetical protein | - |
| HG554_RS28540 | 4423537..4423815 | + | 279 | WP_049587751.1 | hypothetical protein | - |
| HG554_RS20445 (HG554_20440) | 4423812..4424135 | + | 324 | WP_010954741.1 | hypothetical protein | - |
| HG554_RS20450 (HG554_20445) | 4424132..4424524 | + | 393 | WP_010954742.1 | DUF2591 domain-containing protein | - |
| HG554_RS28545 | 4424714..4424986 | - | 273 | WP_049587750.1 | hypothetical protein | - |
| HG554_RS20455 (HG554_20450) | 4425807..4426124 | + | 318 | WP_049587747.1 | hypothetical protein | - |
| HG554_RS20460 (HG554_20455) | 4426164..4426409 | + | 246 | WP_010954745.1 | DUF4224 domain-containing protein | - |
| HG554_RS20465 (HG554_20460) | 4426411..4427460 | + | 1050 | WP_010954746.1 | hypothetical protein ; Integrase | Integrase |
| HG554_RS20475 (HG554_20470) | 4427790..4428809 | - | 1020 | WP_010954747.1 | protease SohB | - |
| HG554_RS20480 (HG554_20475) | 4429007..4429717 | + | 711 | WP_010954748.1 | histidine phosphatase family protein | - |
| HG554_RS20485 (HG554_20480) | 4429774..4430091 | + | 318 | WP_003251077.1 | SCP2 sterol-binding domain-containing protein | - |
| HG554_RS20490 (HG554_20485) | 4430275..4431342 | + | 1068 | WP_010954749.1 | phosphotransferase family protein | - |
| HG554_RS20495 (HG554_20490) | 4431379..4432146 | + | 768 | WP_003251082.1 | hypothetical protein | VF |
| HG554_RS20500 (HG554_20495) | 4432147..4432968 | - | 822 | WP_003251085.1 | class I SAM-dependent methyltransferase | - |
| HG554_RS20505 (HG554_20500) | 4433138..4433488 | - | 351 | WP_012051882.1 | hypothetical protein | - |
| HG554_RS20510 (HG554_20505) | 4433606..4433896 | + | 291 | WP_010954750.1 | RcnB family protein | - |
| HG554_RS20515 (HG554_20510) | 4434140..4434325 | + | 186 | WP_004577263.1 | hypothetical protein | - |
| HG554_RS20520 (HG554_20515) | 4434399..4434791 | + | 393 | WP_010954752.1 | hypothetical protein | - |
| HG554_RS20525 (HG554_20520) | 4434918..4436747 | + | 1830 | WP_010954753.1 | SLC13 family permease | - |
| HG554_RS20530 (HG554_20525) | 4436885..4438309 | + | 1425 | WP_049587745.1 | GGDEF domain-containing protein | - |
| HG554_RS20535 (HG554_20530) | 4438311..4439072 | - | 762 | WP_010954755.1 | TSUP family transporter | - |
| HG554_RS20540 (HG554_20535) | 4439171..4440076 | + | 906 | WP_049587744.1 | hypothetical protein | VF |
| HG554_RS20545 (HG554_20540) | 4440389..4440664 | - | 276 | WP_172835027.1 | hypothetical protein | - |
| HG554_RS20550 (HG554_20545) | 4440925..4441110 | + | 186 | WP_049587743.1 | hypothetical protein | - |
| HG554_RS20555 (HG554_20550) | 4441282..4442574 | - | 1293 | WP_010954761.1 | OprD family porin | - |
| HG554_RS20560 (HG554_20555) | 4442712..4444025 | - | 1314 | WP_003251108.1 | MFS transporter | - |
| HG554_RS20565 (HG554_20560) | 4444234..4444875 | - | 642 | WP_003251109.1 | N-carbamoylsarcosine amidohydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA20007 | AE015451 | 4377646..4431298 | 0.004 | |
| Pseudomonas putida KT2440 | Prophage | TA20570 | NC_002947 | 4377646..4431298 | 0.004 |