MGE detailed information
MGE type: Prophage MGE length: 85688 bp
Accession: NZ_CP053957 Location: 1005989..1091676 Organism: Staphylococcus capitis strain FDAARGOS_753 Replicon: chromosome
Accession: NZ_CP053957 Location: 1005989..1091676 Organism: Staphylococcus capitis strain FDAARGOS_753 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC61_RS04960 () | 1003337..1004395 | + | 1059 | WP_002453585.1 | PTS transporter subunit IIC | - |
| FOC61_RS04965 () | 1004539..1005996 | + | 1458 | WP_002453584.1 | ABC transporter substrate-binding protein/permease | - |
| FOC61_RS04970 () | 1005989..1006714 | + | 726 | WP_002453583.1 | hypothetical protein | VF |
| FOC61_RS04975 () | 1006833..1007996 | + | 1164 | WP_100209048.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| FOC61_RS04980 () | 1007999..1008469 | + | 471 | WP_002453581.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| FOC61_RS04985 () | 1008650..1009249 | + | 600 | WP_002453580.1 | glucosamine-6-phosphate isomerase | Antitoxin Detail |
| FOC61_RS04990 () | 1009277..1009456 | + | 180 | WP_002434789.1 | hypothetical protein | Toxin Detail |
| FOC61_RS04995 () | 1009621..1010019 | + | 399 | WP_002453579.1 | hypothetical protein | - |
| FOC61_RS05000 () | 1010172..1011557 | + | 1386 | WP_002453578.1 | class II fumarate hydratase | - |
| FOC61_RS05005 () | 1011655..1012485 | - | 831 | WP_002453577.1 | RluA family pseudouridine synthase | - |
| FOC61_RS05010 () | 1012661..1013773 | + | 1113 | WP_002453576.1 | GAF domain-containing sensor histidine kinase | - |
| FOC61_RS05015 () | 1013793..1014416 | + | 624 | WP_002453575.1 | response regulator transcription factor | - |
| FOC61_RS05020 () | 1014665..1015129 | + | 465 | WP_002453574.1 | helix-turn-helix transcriptional regulator | - |
| FOC61_RS05025 () | 1015350..1016480 | + | 1131 | WP_002453573.1 | DUF445 domain-containing protein | - |
| FOC61_RS05030 () | 1016552..1016896 | + | 345 | WP_002453572.1 | YlbF/YmcA family competence regulator | - |
| FOC61_RS05035 () | 1017301..1018497 | + | 1197 | WP_002453571.1 | DNA repair exonuclease | - |
| FOC61_RS05040 () | 1018487..1021426 | + | 2940 | WP_002453570.1 | AAA family ATPase | - |
| FOC61_RS05045 () | 1021423..1022364 | + | 942 | WP_002434737.1 | 3'-5' exoribonuclease YhaM | - |
| FOC61_RS05050 () | 1022555..1022659 | + | 105 | WP_016898319.1 | type I toxin-antitoxin system Fst family toxin | Toxin Detail |
| FOC61_RS05055 () | 1022814..1023815 | - | 1002 | WP_002453569.1 | hypothetical protein | VF |
| FOC61_RS05060 () | 1024015..1024584 | - | 570 | WP_002453568.1 | DUF3267 domain-containing protein | - |
| FOC61_RS05065 () | 1024776..1025147 | - | 372 | WP_002434824.1 | YtxH domain-containing protein | - |
| FOC61_RS05070 () | 1025225..1025650 | - | 426 | WP_002434751.1 | HIT family protein | - |
| FOC61_RS05075 () | 1025783..1026523 | + | 741 | WP_002453567.1 | hypothetical protein | VF |
| FOC61_RS05080 () | 1026516..1027739 | + | 1224 | WP_002453566.1 | ABC transporter permease | - |
| FOC61_RS05085 () | 1027791..1028294 | - | 504 | WP_002434692.1 | signal transduction protein TRAP | - |
| FOC61_RS05090 () | 1028633..1029667 | + | 1035 | WP_002453565.1 | uroporphyrinogen decarboxylase | - |
| FOC61_RS05095 () | 1029743..1030666 | + | 924 | WP_002453564.1 | ferrochelatase | - |
| FOC61_RS05100 () | 1030808..1032202 | + | 1395 | WP_002453563.1 | protoporphyrinogen oxidase | - |
| FOC61_RS05105 () | 1032351..1032905 | + | 555 | WP_002453562.1 | alpha/beta hydrolase | - |
| FOC61_RS05150 () | 1034106..1035170 | - | 1065 | WP_002453561.1 | hypothetical protein ; Integrase | Integrase |
| FOC61_RS05155 () | 1035224..1036294 | - | 1071 | WP_002453560.1 | restriction endonuclease subunit S | - |
| FOC61_RS05160 () | 1036278..1038149 | - | 1872 | WP_039973891.1 | N-6 DNA methylase | - |
| FOC61_RS05165 () | 1038304..1038768 | - | 465 | WP_002453558.1 | ImmA/IrrE family metallo-endopeptidase | Toxin Detail |
| FOC61_RS05170 () | 1038781..1039110 | - | 330 | WP_002453557.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| FOC61_RS05175 () | 1039304..1039543 | + | 240 | WP_002453556.1 | helix-turn-helix domain-containing protein | - |
| FOC61_RS05180 () | 1039555..1039788 | + | 234 | WP_002453555.1 | DUF2829 domain-containing protein | - |
| FOC61_RS05185 () | 1039810..1039974 | + | 165 | WP_002453554.1 | hypothetical protein | - |
| FOC61_RS05190 () | 1039978..1040190 | + | 213 | WP_002453553.1 | DUF771 domain-containing protein | - |
| FOC61_RS05195 () | 1040203..1040379 | + | 177 | WP_002453552.1 | hypothetical protein | - |
| FOC61_RS05200 () | 1040443..1040679 | + | 237 | WP_039973868.1 | hypothetical protein | - |
| FOC61_RS05205 () | 1040672..1041157 | + | 486 | WP_002453550.1 | siphovirus Gp157 family protein | - |
| FOC61_RS05210 () | 1041158..1041859 | + | 702 | WP_002453549.1 | AAA family ATPase | - |
| FOC61_RS05215 () | 1041846..1043255 | + | 1410 | WP_002453548.1 | DEAD/DEAH box helicase | - |
| FOC61_RS05220 () | 1043273..1043821 | + | 549 | WP_002453547.1 | DUF669 domain-containing protein | - |
| FOC61_RS05225 () | 1043799..1046108 | + | 2310 | WP_002453546.1 | primase | - |
| FOC61_RS05230 () | 1046382..1046693 | + | 312 | WP_002453545.1 | VRR-NUC domain-containing protein | - |
| FOC61_RS05235 () | 1046694..1046885 | + | 192 | WP_002453544.1 | hypothetical protein | - |
| FOC61_RS05240 () | 1046886..1047239 | + | 354 | WP_002453543.1 | hypothetical protein | - |
| FOC61_RS05245 () | 1047463..1047693 | + | 231 | WP_039973889.1 | DUF3310 domain-containing protein | - |
| FOC61_RS05250 () | 1047839..1048207 | + | 369 | WP_002453541.1 | hypothetical protein | - |
| FOC61_RS05255 () | 1048208..1048528 | + | 321 | WP_002453540.1 | MazG-like family protein | - |
| FOC61_RS05260 () | 1048565..1048717 | + | 153 | WP_002453539.1 | DUF1381 domain-containing protein | - |
| FOC61_RS05265 () | 1048710..1048877 | + | 168 | WP_002453538.1 | hypothetical protein | - |
| FOC61_RS05270 () | 1048877..1049026 | + | 150 | WP_002453537.1 | DUF1514 family protein | - |
| FOC61_RS05275 () | 1049043..1049489 | + | 447 | WP_002453536.1 | transcriptional regulator | - |
| FOC61_RS05280 () | 1050094..1050456 | + | 363 | WP_039973865.1 | HNH endonuclease | - |
| FOC61_RS05285 () | 1050606..1051076 | + | 471 | WP_002453534.1 | phage terminase small subunit P27 family | - |
| FOC61_RS05290 () | 1051069..1052820 | + | 1752 | WP_002453533.1 | terminase large subunit | - |
| FOC61_RS05295 () | 1052832..1053026 | + | 195 | WP_039973862.1 | hypothetical protein | - |
| FOC61_RS05300 () | 1053029..1054261 | + | 1233 | WP_039973861.1 | phage portal protein | - |
| FOC61_RS05305 () | 1054251..1054808 | + | 558 | WP_039973859.1 | HK97 family phage prohead protease | - |
| FOC61_RS05310 () | 1054849..1056204 | + | 1356 | WP_002453529.1 | phage major capsid protein | - |
| FOC61_RS05315 () | 1056223..1056564 | + | 342 | WP_039973858.1 | head-tail connector protein | - |
| FOC61_RS05320 () | 1056554..1056883 | + | 330 | WP_002453527.1 | head-tail adaptor protein | - |
| FOC61_RS05325 () | 1056880..1057284 | + | 405 | WP_039973857.1 | hypothetical protein | - |
| FOC61_RS05330 () | 1057289..1057693 | + | 405 | WP_002453525.1 | hypothetical protein | - |
| FOC61_RS05335 () | 1057706..1058335 | + | 630 | WP_002453524.1 | phage tail protein | - |
| FOC61_RS05340 () | 1058354..1058539 | + | 186 | WP_002453523.1 | hypothetical protein | - |
| FOC61_RS05345 () | 1058603..1058965 | + | 363 | WP_002453522.1 | hypothetical protein | - |
| FOC61_RS05350 () | 1058998..1059150 | + | 153 | WP_002453521.1 | hypothetical protein | - |
| FOC61_RS05355 () | 1059179..1064014 | + | 4836 | WP_002453520.1 | phage tail tape measure protein | - |
| FOC61_RS05360 () | 1064016..1064849 | + | 834 | WP_002453519.1 | phage tail family protein | - |
| FOC61_RS05365 () | 1064859..1066418 | + | 1560 | WP_172848595.1 | prophage endopeptidase tail family protein | - |
| FOC61_RS05370 () | 1066411..1066584 | + | 174 | WP_002453517.1 | hypothetical protein | - |
| FOC61_RS05375 () | 1066600..1068462 | + | 1863 | WP_002453516.1 | DUF2817 domain-containing protein | - |
| FOC61_RS05380 () | 1068462..1069676 | + | 1215 | WP_002453515.1 | BppU family phage baseplate upper protein | - |
| FOC61_RS05385 () | 1069681..1070304 | + | 624 | WP_002453514.1 | poly-gamma-glutamate hydrolase family protein | - |
| FOC61_RS05390 () | 1070301..1070726 | + | 426 | WP_039973854.1 | hypothetical protein | - |
| FOC61_RS05395 () | 1070713..1071120 | + | 408 | WP_039973851.1 | hypothetical protein | - |
| FOC61_RS05400 () | 1071221..1072852 | + | 1632 | WP_002453511.1 | ISNCY family transposase KIS | Transposase |
| FOC61_RS05405 () | 1072864..1073202 | + | 339 | WP_002453510.1 | hypothetical protein | - |
| FOC61_RS05410 () | 1073195..1073341 | + | 147 | WP_002502836.1 | XkdX family protein | - |
| FOC61_RS05415 () | 1073405..1073815 | + | 411 | WP_002453509.1 | phage holin | - |
| FOC61_RS05420 () | 1073790..1075253 | + | 1464 | WP_002453508.1 | hypothetical protein | VF |
| FOC61_RS05425 () | 1076005..1076484 | + | 480 | WP_002453507.1 | hypothetical protein | - |
| FOC61_RS05430 () | 1077191..1078594 | + | 1404 | WP_002453506.1 | o-succinylbenzoate--CoA ligase | - |
| FOC61_RS05435 () | 1078591..1079592 | + | 1002 | WP_002453505.1 | o-succinylbenzoate synthase | - |
| FOC61_RS05440 () | 1079589..1079837 | - | 249 | WP_029625717.1 | membrane protein insertion efficiency factor YidD | - |
| FOC61_RS05445 () | 1079908..1080381 | + | 474 | WP_002453504.1 | nucleoside triphosphatase YtkD | - |
| FOC61_RS05450 () | 1080362..1081147 | + | 786 | WP_002453503.1 | S9 family peptidase | - |
| FOC61_RS05455 () | 1081225..1082817 | - | 1593 | WP_002453502.1 | phosphoenolpyruvate carboxykinase (ATP) | - |
| FOC61_RS05460 () | 1083193..1084386 | + | 1194 | WP_002453501.1 | methionine adenosyltransferase | - |
| FOC61_RS05465 () | 1084497..1085405 | + | 909 | WP_002453500.1 | NERD domain-containing protein | - |
| FOC61_RS05470 () | 1085561..1086400 | + | 840 | WP_002453499.1 | aldo/keto reductase | - |
| FOC61_RS05475 () | 1086479..1086835 | - | 357 | WP_002453498.1 | CrcB family protein | - |
| FOC61_RS05480 () | 1086832..1087194 | - | 363 | WP_002434729.1 | fluoride efflux transporter CrcB | - |
| FOC61_RS05485 () | 1087249..1087557 | - | 309 | WP_002434733.1 | hypothetical protein | - |
| FOC61_RS05490 () | 1087850..1088563 | + | 714 | WP_002453497.1 | transaldolase | - |
| FOC61_RS05495 () | 1088719..1089162 | + | 444 | WP_002453496.1 | hypothetical protein | - |
| FOC61_RS05500 () | 1089149..1089592 | - | 444 | WP_002453495.1 | competence protein ComK | - |
| FOC61_RS05505 () | 1089612..1090082 | - | 471 | WP_002453494.1 | sigma-70 family RNA polymerase sigma factor | - |
| FOC61_RS05510 () | 1090291..1090509 | + | 219 | WP_002443489.1 | hypothetical protein | - |
| FOC61_RS05515 () | 1090825..1091676 | + | 852 | WP_002453493.1 | N-acetylglucosaminidase | - |
| FOC61_RS05520 () | 1091990..1093480 | + | 1491 | WP_002453492.1 | FAD/NAD(P)-binding protein | - |
| FOC61_RS05525 () | 1093889..1094938 | + | 1050 | WP_002453491.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| FOC61_RS05530 () | 1094945..1095577 | + | 633 | WP_002453490.1 | riboflavin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|