MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP053607 Location: 1358898..1380572 Organism: Escherichia coli strain NEB5-alpha_F'Iq Replicon: chromosome
Accession: NZ_CP053607 Location: 1358898..1380572 Organism: Escherichia coli strain NEB5-alpha_F'Iq Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO392_RS06650 () | 1354948..1355931 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HO392_RS06655 () | 1356409..1357782 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HO392_RS06660 () | 1357911..1358846 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HO392_RS06665 () | 1358898..1360133 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| HO392_RS06670 () | 1360135..1360350 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HO392_RS06675 () | 1360429..1360638 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1360454..1360632 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1360454..1360632 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1360454..1360632 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1360454..1360632 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HO392_RS06680 () | 1360631..1360825 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HO392_RS06685 () | 1360882..1361691 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| HO392_RS06690 () | 1361684..1364284 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| HO392_RS06695 () | 1364386..1364661 | - | 276 | WP_000632297.1 | protein RacC | - |
| HO392_RS06700 () | 1364736..1364906 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HO392_RS06705 () | 1364906..1365127 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| HO392_RS06710 () | 1365569..1366057 | + | 489 | WP_046613436.1 | superinfection exclusion B family protein | - |
| HO392_RS06715 () | 1366054..1366209 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| HO392_RS06720 () | 1366663..1367139 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| HO392_RS06725 () | 1367263..1367559 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| HO392_RS06730 () | 1367582..1368004 | + | 423 | WP_000693797.1 | phage protein | - |
| HO392_RS06735 () | 1368017..1368874 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| HO392_RS06740 () | 1368881..1369627 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| HO392_RS06745 () | 1369650..1370102 | + | 453 | Protein_1316 | DUF1627 domain-containing protein | - |
| HO392_RS06750 () | 1370298..1370483 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HO392_RS06755 () | 1370680..1372137 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| HO392_RS06760 () | 1372275..1372538 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HO392_RS06765 () | 1372519..1372878 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| HO392_RS06770 () | 1373352..1374284 | + | 933 | Protein_1321 | phage tail length tape measure family protein | - |
| HO392_RS06775 () | 1374287..1374502 | + | 216 | Protein_1322 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO392_RS06780 () | 1374644..1375624 | - | 981 | WP_046613426.1 | IS5 family transposase ISKpn26 | Transposase |
| HO392_RS06785 () | 1375694..1375882 | + | 189 | Protein_1324 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO392_RS06790 () | 1375947..1379309 | + | 3363 | WP_071885698.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HO392_RS06795 () | 1379309..1379884 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| HO392_RS06800 () | 1379982..1380572 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO392_RS06805 () | 1380889..1381122 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| HO392_RS06810 () | 1381191..1381304 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| HO392_RS06815 () | 1382083..1382517 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HO392_RS06820 () | 1382658..1383791 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |