MGE detailed information
MGE type: Genomic_island MGE length: 19387 bp
Accession: NZ_CP053605 Location: 236137..255523 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Accession: NZ_CP053605 Location: 236137..255523 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO393_RS01045 () | 231288..232202 | - | 915 | WP_000648572.1 | LysR family transcriptional regulator | - |
| HO393_RS01050 () | 232443..233243 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HO393_RS01055 () | 233274..233870 | + | 597 | Protein_204 | methyltransferase domain-containing protein | - |
| HO393_RS01060 () | 233918..235276 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| HO393_RS01065 () | 235348..236103 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| HO393_RS01070 () | 236137..236859 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| HO393_RS01075 () | 236856..237323 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| HO393_RS01080 () | 237388..238119 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| HO393_RS01090 () | 238656..239441 | + | 786 | WP_001086141.1 | lipoprotein | - |
| HO393_RS01095 () | 239578..240057 | - | 480 | WP_001236645.1 | hypothetical protein | - |
| HO393_RS01100 () | 240067..240423 | - | 357 | Protein_212 | hypothetical protein | - |
| HO393_RS01105 () | 240421..240699 | + | 279 | Protein_213 | ISAs1 family transposase | - |
| HO393_RS01110 () | 240740..241510 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HO393_RS01115 () | 241664..242137 | + | 474 | WP_000532698.1 | Ivy family C-type lysozyme inhibitor | - |
| HO393_RS01120 () | 242180..244624 | - | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| HO393_RS01125 () | 244864..245442 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| HO393_RS01130 () | 245648..246415 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| HO393_RS01135 () | 246386..247126 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HO393_RS01140 () | 247282..247560 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HO393_RS01145 () | 247563..247823 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HO393_RS01150 () | 248033..248782 | + | 750 | WP_000056849.1 | Murein DD-endopeptidase MepH | VF |
| HO393_RS01155 () | 248958..249455 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| HO393_RS01160 () | 249679..251418 | - | 1740 | WP_001334802.1 | Flagellar biosynthesis protein FlhA | VF |
| HO393_RS01165 () | 251363..252148 | + | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| HO393_RS01170 () | 252219..253274 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HO393_RS01175 () | 253326..253619 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HO393_RS01180 () | 253622..254020 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HO393_RS01185 () | 254030..254482 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| HO393_RS01190 () | 254788..255054 | + | 267 | WP_001295202.1 | hypothetical protein | - |
| HO393_RS01195 () | 254966..255523 | + | 558 | WP_001352051.1 | peptide chain release factor H | - |
| HO393_RS01200 () | 255580..257037 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| HO393_RS01205 () | 257421..258152 | + | 732 | Protein_233 | 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase | - |
| HO393_RS01210 () | 258162..258971 | + | 810 | WP_000160710.1 | 2-keto-4-pentenoate hydratase | - |
| HO393_RS01215 () | 258968..259918 | + | 951 | WP_000044314.1 | acetaldehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA28996, TA28997 | NC_020518 | 223678..243064 | 0 |