MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP053604 Location: 2832052..2873937 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Accession: NZ_CP053604 Location: 2832052..2873937 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO394_RS13755 () | 2827688..2829349 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| HO394_RS13760 () | 2829498..2829839 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| HO394_RS13765 () | 2829901..2830191 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| HO394_RS13770 () | 2830181..2830657 | - | 477 | WP_000600189.1 | type II toxin-antitoxin system toxin RatA | - |
| HO394_RS13775 () | 2830789..2831271 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| HO394_RS13785 () | 2832052..2833293 | + | 1242 | WP_000101722.1 | integrase | - |
| HO394_RS13790 () | 2833537..2834493 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| HO394_RS13795 () | 2834537..2834749 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| HO394_RS13800 () | 2834878..2836287 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| HO394_RS13805 () | 2836440..2837066 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| HO394_RS13810 () | 2837244..2839433 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| HO394_RS13815 () | 2839430..2841046 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| HO394_RS13820 () | 2841406..2841669 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| HO394_RS13825 () | 2841811..2842884 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| HO394_RS13830 () | 2842877..2843248 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| HO394_RS13835 () | 2843603..2844466 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| HO394_RS13840 () | 2844558..2845379 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| HO394_RS13845 () | 2845596..2846297 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| HO394_RS13850 () | 2846338..2846574 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| HO394_RS13855 () | 2846574..2847017 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| HO394_RS13860 () | 2847041..2847508 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| HO394_RS13865 () | 2847733..2848047 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| HO394_RS13870 () | 2848060..2849069 | - | 1010 | Protein_2711 | arsenic transporter | - |
| HO394_RS13875 () | 2849211..2850914 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| HO394_RS13880 () | 2851486..2851709 | + | 224 | Protein_2713 | DUF905 family protein | - |
| HO394_RS13885 () | 2851812..2852270 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| HO394_RS13890 () | 2852279..2852761 | + | 483 | WP_001407480.1 | RadC family protein | - |
| HO394_RS13895 () | 2852770..2852970 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| HO394_RS13900 () | 2853008..2853325 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HO394_RS13905 () | 2853346..2853675 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| HO394_RS13910 () | 2854039..2858619 | - | 4581 | WP_010723187.1 | adhesin-like autotransporter YpjA/EhaD | - |
| HO394_RS13915 () | 2858684..2858803 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| HO394_RS13920 () | 2858958..2859176 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| HO394_RS13925 () | 2859531..2860904 | - | 1374 | Protein_2722 | DUF5507 domain-containing protein | - |
| HO394_RS13935 () | 2862290..2862622 | + | 333 | WP_001326687.1 | hypothetical protein | - |
| HO394_RS13940 () | 2862641..2864542 | + | 1902 | Protein_2724 | alpha amylase C-terminal domain-containing protein | - |
| HO394_RS13945 () | 2864878..2865855 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| HO394_RS13950 () | 2865875..2867143 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| HO394_RS13955 () | 2867166..2868614 | + | 1449 | WP_000772830.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| HO394_RS13960 () | 2868628..2869908 | + | 1281 | WP_001087611.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| HO394_RS13965 () | 2870146..2871546 | + | 1401 | WP_001295173.1 | GABA permease | - |
| HO394_RS13970 () | 2871567..2872229 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| HO394_RS13975 () | 2872230..2872679 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| HO394_RS13980 () | 2872763..2872921 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| HO394_RS13985 () | 2873104..2873403 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HO394_RS13990 () | 2873413..2873937 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| HO394_RS13995 () | 2873984..2874388 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| HO394_RS14000 () | 2875057..2875506 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| HO394_RS14005 () | 2875543..2875887 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| HO394_RS14010 () | 2876039..2876368 | + | 330 | WP_024255351.1 | DUF883 domain-containing protein | - |
| HO394_RS14015 () | 2876616..2876861 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| HO394_RS14020 () | 2876858..2877268 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.007 |