MGE detailed information
MGE type: Prophage MGE length: 21674 bp
Accession: NZ_CP053604 Location: 1502039..1523712 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Accession: NZ_CP053604 Location: 1502039..1523712 Organism: Escherichia coli strain NEB10-beta Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO394_RS07340 () | 1498089..1499072 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HO394_RS07345 () | 1499550..1500923 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HO394_RS07350 () | 1501052..1501987 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HO394_RS07355 () | 1502039..1503274 | - | 1236 | WP_000040852.1 | site-specific integrase | - |
| HO394_RS07360 () | 1503276..1503491 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HO394_RS07365 () | 1503570..1503779 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1503595..1503773 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1503595..1503773 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1503595..1503773 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1503595..1503773 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HO394_RS07370 () | 1503772..1503966 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HO394_RS07375 () | 1504023..1504832 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| HO394_RS07380 () | 1504825..1507425 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| HO394_RS07385 () | 1507527..1507802 | - | 276 | WP_000632297.1 | protein RacC | - |
| HO394_RS07390 () | 1507877..1508047 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HO394_RS07395 () | 1508047..1508268 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| HO394_RS07400 () | 1508710..1509198 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| HO394_RS07405 () | 1509195..1509350 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| HO394_RS07410 () | 1509804..1510280 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| HO394_RS07415 () | 1510404..1510700 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| HO394_RS07420 () | 1510723..1511145 | + | 423 | WP_000693797.1 | phage protein | - |
| HO394_RS07425 () | 1511158..1512014 | + | 857 | Protein_1447 | DUF1376 domain-containing protein | - |
| HO394_RS07430 () | 1512021..1512767 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| HO394_RS07435 () | 1512790..1513350 | + | 561 | WP_000450663.1 | DUF1627 domain-containing protein | - |
| HO394_RS07440 () | 1513438..1513623 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HO394_RS07445 () | 1513820..1515277 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| HO394_RS07450 () | 1515415..1515678 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HO394_RS07455 () | 1515659..1516018 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| HO394_RS07460 () | 1516492..1517424 | + | 933 | Protein_1454 | phage tail length tape measure family protein | - |
| HO394_RS07465 () | 1517427..1517642 | + | 216 | Protein_1455 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO394_RS07470 () | 1517784..1518764 | - | 981 | WP_000019451.1 | IS5-like element ISKpn26 family transposase | - |
| HO394_RS07475 () | 1518834..1519022 | + | 189 | Protein_1457 | Ail/Lom family outer membrane beta-barrel protein | - |
| HO394_RS07480 () | 1519087..1522449 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HO394_RS07485 () | 1522449..1523024 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| HO394_RS07490 () | 1523122..1523712 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| HO394_RS07495 () | 1524029..1524262 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| HO394_RS07500 () | 1524417..1525433 | + | 1017 | WP_010723085.1 | IS5-like element IS5 family transposase | - |
| HO394_RS07505 () | 1526422..1526856 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HO394_RS07510 () | 1526997..1528130 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |