MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 171562 bp
Accession: NZ_CP053574 Location: 1..171562 Organism: Citrobacter sp. TSA-1 Replicon: plasmid unnamed1
Accession: NZ_CP053574 Location: 1..171562 Organism: Citrobacter sp. TSA-1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF677_RS23285 () | 1306..2046 | - | 741 | WP_001066960.1 | tyrosine-type recombinase/integrase | - |
| HF677_RS23290 () | 2411..2707 | - | 297 | WP_079893805.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HF677_RS23295 () | 2694..2960 | - | 267 | WP_168726200.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HF677_RS23300 () | 3186..3481 | - | 296 | Protein_4 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HF677_RS23305 () | 3468..3773 | - | 306 | WP_168726204.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HF677_RS23310 () | 3841..4482 | - | 642 | Protein_6 | IS66 family transposase ISEc8 | Transposase |
| HF677_RS23315 () | 4497..4907 | + | 411 | WP_095715832.1 | DNA-binding protein | - |
| HF677_RS23320 () | 5064..5237 | + | 174 | WP_141244114.1 | hypothetical protein | - |
| HF677_RS23325 () | 5290..5481 | - | 192 | WP_095715833.1 | DUF4222 domain-containing protein | - |
| HF677_RS23330 () | 5988..6485 | + | 498 | WP_095715834.1 | hypothetical protein | VF |
| HF677_RS23335 () | 6507..8051 | + | 1545 | WP_001559829.1 | hypothetical protein | VF |
| HF677_RS23340 () | 8067..9404 | + | 1338 | WP_095715835.1 | hypothetical protein | VF |
| HF677_RS23345 () | 9401..10054 | + | 654 | WP_095715836.1 | hypothetical protein | VF |
| HF677_RS23350 () | 10057..11787 | + | 1731 | WP_095715837.1 | Outer membrane porin F | VF |
| HF677_RS23355 () | 11793..12284 | + | 492 | WP_001007315.1 | Major exported protein | VF |
| HF677_RS23360 () | 12453..15110 | + | 2658 | WP_095715838.1 | Protein ClpV1 | VF |
| HF677_RS23365 () | 15107..15673 | + | 567 | WP_095715839.1 | type IV secretion protein Rhs | - |
| HF677_RS23370 () | 15667..16209 | + | 543 | WP_095715840.1 | type VI secretion protein | - |
| HF677_RS23375 () | 16196..18718 | + | 2523 | WP_095715841.1 | Actin cross-linking toxin VgrG1 | VF |
| HF677_RS23380 () | 18734..21097 | + | 2364 | WP_095715842.1 | hypothetical protein | - |
| HF677_RS23385 () | 21094..22089 | + | 996 | WP_095715843.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| HF677_RS23390 () | 22216..22473 | + | 258 | WP_095715844.1 | hypothetical protein | VF |
| HF677_RS23395 () | 22476..23666 | + | 1191 | WP_095715845.1 | hypothetical protein | - |
| HF677_RS23400 () | 23678..27070 | + | 3393 | WP_095715853.1 | hypothetical protein | VF |
| HF677_RS23405 () | 27070..28668 | + | 1599 | WP_095715846.1 | hypothetical protein | VF |
| HF677_RS23410 () | 28802..30565 | + | 1764 | WP_095715847.1 | hypothetical protein | VF |
| HF677_RS23415 () | 30529..31620 | + | 1092 | WP_172864460.1 | hypothetical protein | VF |
| HF677_RS23420 () | 31601..32137 | + | 537 | WP_095715849.1 | hypothetical protein | VF |
| HF677_RS23425 () | 32140..32571 | + | 432 | WP_095715850.1 | type VI secretion system baseplate subunit TssE | - |
| HF677_RS23430 () | 32728..33129 | + | 402 | WP_095715851.1 | hypothetical protein | - |
| HF677_RS23435 () | 33285..34529 | + | 1245 | WP_095715852.1 | GIY-YIG nuclease family protein | - |
| HF677_RS23440 () | 34722..36507 | + | 1786 | Protein_32 | NERD domain-containing protein | - |
| HF677_RS23445 () | 36569..36874 | + | 306 | WP_107144921.1 | hypothetical protein | - |
| HF677_RS23450 () | 36929..38287 | + | 1359 | WP_168726199.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| HF677_RS23455 () | 38486..39211 | - | 726 | Protein_35 | IS21 family transposase ISSso4 | Transposase |
| HF677_RS23460 () | 39395..39571 | + | 177 | WP_095715567.1 | IS66 family transposase ISEc8 | Transposase |
| HF677_RS23465 () | 39621..39987 | + | 367 | Protein_37 | IS66 family transposase ISEc8 | Transposase |
| HF677_RS23470 () | 39891..40211 | - | 321 | WP_095715570.1 | PerC family transcriptional regulator | - |
| HF677_RS23475 () | 40290..40928 | - | 639 | WP_168726198.1 | ParB N-terminal domain-containing protein | - |
| HF677_RS23480 () | 40913..42145 | - | 1233 | WP_168726197.1 | phosphoadenosine phosphosulfate reductase | - |
| HF677_RS23485 () | 42298..42528 | - | 231 | WP_095715257.1 | P fimbrial regulatory protein KS71A | VF |
| HF677_RS23490 () | 43046..43315 | + | 270 | WP_095715258.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HF677_RS23495 () | 43503..44036 | + | 534 | WP_172864461.1 | hypothetical protein | VF |
| HF677_RS23500 () | 44145..46562 | + | 2418 | WP_095715999.1 | Outer membrane usher protein FimD | VF |
| HF677_RS23505 () | 46555..47247 | + | 693 | WP_095715998.1 | Chaperone protein FaeE | VF |
| HF677_RS23510 () | 47210..47752 | + | 543 | WP_141244121.1 | F18 fimbrial protein FedE | - |
| HF677_RS23515 () | 47989..48909 | + | 921 | WP_168726217.1 | hypothetical protein | - |
| HF677_RS23520 () | 49567..50172 | + | 606 | WP_095715119.1 | hypothetical protein | - |
| HF677_RS23525 () | 50276..51094 | + | 819 | WP_095715121.1 | polysaccharide deacetylase family protein | - |
| HF677_RS23530 () | 51106..52200 | + | 1095 | WP_095715120.1 | glycosyltransferase family 4 protein | - |
| HF677_RS23535 () | 53313..53546 | + | 234 | WP_095715122.1 | DUF4222 domain-containing protein | - |
| HF677_RS23540 () | 54107..54199 | - | 93 | WP_172864462.1 | integrase | - |
| HF677_RS23545 () | 54401..54640 | - | 240 | Protein_53 | ISNCY family transposase ISLad2 | Transposase |
| HF677_RS23550 () | 54804..56201 | - | 1398 | WP_095715124.1 | ISNCY family transposase ISKpn21 | Transposase |
| HF677_RS23555 () | 56347..56466 | - | 120 | WP_100756432.1 | nonstructural protein | - |
| HF677_RS23560 () | 56468..57256 | - | 789 | WP_095715314.1 | hypothetical protein | - |
| HF677_RS23565 () | 57297..58889 | - | 1593 | WP_095715315.1 | phage capsid protein | - |
| HF677_RS23570 () | 59035..59544 | - | 510 | WP_168726216.1 | hypothetical protein | - |
| HF677_RS23575 () | 59525..59794 | - | 270 | WP_168726215.1 | hypothetical protein | - |
| HF677_RS23580 () | 59781..60644 | - | 864 | WP_172864463.1 | replication initiation protein | - |
| HF677_RS23585 () | 60750..62147 | - | 1398 | WP_095715124.1 | ISNCY family transposase ISKpn21 | Transposase |
| HF677_RS23590 () | 63432..65159 | + | 1728 | WP_046499074.1 | ATP-binding protein | - |
| HF677_RS23595 () | 65156..66571 | + | 1416 | WP_095715506.1 | AAA family ATPase | - |
| HF677_RS23600 () | 66702..67463 | - | 762 | WP_080950113.1 | hypothetical protein | - |
| HF677_RS23605 () | 67920..68840 | + | 921 | WP_095715505.1 | hypothetical protein | - |
| HF677_RS23610 () | 68936..69055 | - | 120 | Protein_66 | IS3 family transposase | - |
| HF677_RS23615 () | 69175..69462 | - | 288 | WP_172864464.1 | hypothetical protein | - |
| HF677_RS23620 () | 69922..70407 | - | 486 | WP_095715504.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HF677_RS23625 () | 70395..70661 | - | 267 | WP_095715503.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HF677_RS23630 () | 70979..71185 | - | 207 | Protein_70 | IS3 family transposase | - |
| HF677_RS23635 () | 71749..72306 | + | 558 | WP_095715502.1 | Attachment invasion locus protein | VF |
| HF677_RS23640 () | 72341..72547 | + | 207 | Protein_72 | IS21 family transposase ISEc12 | Transposase |
| HF677_RS23645 () | 72540..73037 | - | 498 | WP_168726214.1 | hypothetical protein | - |
| HF677_RS23650 () | 73118..74650 | + | 1533 | Protein_74 | IS3 family transposase ISKpn38 | Transposase |
| HF677_RS23655 () | 74704..75198 | - | 495 | Protein_75 | transposase | - |
| HF677_RS23660 () | 75399..75602 | - | 204 | WP_141244120.1 | hypothetical protein | - |
| HF677_RS23665 () | 75953..76147 | + | 195 | Protein_77 | hypothetical protein | - |
| HF677_RS23670 () | 76321..77250 | - | 930 | WP_095715991.1 | Recombination-promoting nuclease RpnA | VF |
| HF677_RS23680 () | 79250..80170 | - | 921 | WP_168726211.1 | hypothetical protein | - |
| HF677_RS23685 () | 80553..81530 | - | 978 | WP_168726210.1 | hypothetical protein | - |
| HF677_RS23690 () | 81689..82000 | - | 312 | WP_095715995.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| HF677_RS23695 () | 82015..82653 | - | 639 | WP_095715996.1 | DsbA family protein | - |
| HF677_RS23700 () | 82847..83389 | - | 543 | WP_141244121.1 | F18 fimbrial protein FedE | - |
| HF677_RS23705 () | 83352..84044 | - | 693 | WP_095715998.1 | Chaperone protein FaeE | VF |
| HF677_RS23710 () | 84037..86454 | - | 2418 | WP_095715999.1 | Outer membrane usher protein FimD | VF |
| HF677_RS23715 () | 86563..87096 | - | 534 | WP_168726208.1 | hypothetical protein | VF |
| HF677_RS23720 () | 87284..87553 | - | 270 | WP_095715258.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HF677_RS23725 () | 88071..88301 | + | 231 | WP_095715257.1 | P fimbrial regulatory protein KS71A | VF |
| HF677_RS23730 () | 88769..89053 | + | 285 | WP_095715256.1 | hypothetical protein | - |
| HF677_RS23735 () | 89046..89780 | + | 735 | WP_095715255.1 | hypothetical protein | - |
| HF677_RS23740 () | 89777..90559 | + | 783 | WP_168726203.1 | site-specific integrase | - |
| HF677_RS23745 () | 90709..91650 | - | 942 | WP_168726202.1 | Recombination-promoting nuclease RpnA | VF |
| HF677_RS23750 () | 91699..92271 | - | 573 | WP_168726207.1 | DUF2913 family protein | - |
| HF677_RS23755 () | 92579..94111 | - | 1533 | Protein_95 | IS3 family transposase ISKpn38 | Transposase |
| HF677_RS23760 () | 94187..95359 | + | 1173 | WP_095715662.1 | IS21 family transposase IS21 | Transposase |
| HF677_RS23765 () | 95359..96064 | + | 706 | Protein_97 | IS21 family transposase IS21 | Transposase |
| HF677_RS23770 () | 96276..97022 | - | 747 | WP_095715663.1 | MipA/OmpV family protein | - |
| HF677_RS23775 () | 97477..98298 | + | 822 | WP_095715664.1 | helix-turn-helix domain-containing protein | - |
| HF677_RS23780 () | 98412..98717 | + | 306 | WP_141244099.1 | hypothetical protein | - |
| HF677_RS23785 () | 98710..99198 | + | 489 | WP_095715665.1 | response regulator | - |
| HF677_RS23790 () | 99350..99736 | - | 387 | WP_095715710.1 | hypothetical protein | - |
| HF677_RS23795 () | 99881..100195 | + | 315 | Protein_103 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HF677_RS23800 () | 100619..101206 | - | 588 | WP_095715666.1 | DUF2913 family protein | - |
| HF677_RS23805 () | 101859..104846 | - | 2988 | WP_095715667.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HF677_RS23810 () | 105014..105664 | + | 651 | WP_095715668.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HF677_RS23815 () | 106038..106643 | + | 606 | WP_095715669.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| HF677_RS23820 () | 106640..107557 | + | 918 | WP_095715670.1 | Phosphatidate cytidylyltransferase | VF |
| HF677_RS23825 () | 107561..108202 | + | 642 | WP_095715671.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| HF677_RS23830 () | 108195..109955 | + | 1761 | WP_095715672.1 | bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase | - |
| HF677_RS23835 () | 109952..111238 | + | 1287 | WP_095715673.1 | phosphatase PAP2/dual specificity phosphatase family protein | - |
| HF677_RS23840 () | 111214..111624 | + | 411 | WP_095715674.1 | hypothetical protein | - |
| HF677_RS23845 () | 111649..111855 | - | 207 | Protein_113 | replication initiation protein | - |
| HF677_RS23850 () | 111893..111967 | - | 75 | WP_065310830.1 | RepA leader peptide Tap | - |
| HF677_RS23855 () | 112202..112462 | - | 261 | WP_095715676.1 | replication regulatory protein RepA | - |
| HF677_RS23860 () | 112824..113384 | - | 561 | WP_095715677.1 | fertility inhibition protein FinO | - |
| HF677_RS23865 () | 113444..114175 | - | 732 | WP_095715678.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HF677_RS23870 () | 114169..119340 | - | 5172 | WP_095715679.1 | Multifunctional conjugation protein TraI | Relaxase |
| HF677_RS23875 () | 119340..121538 | - | 2199 | WP_095715680.1 | type IV conjugative transfer system coupling protein TraD | - |
| HF677_RS23880 () | 121678..121893 | + | 216 | Protein_120 | toxin-antitoxin system antitoxin VapB | - |
| HF677_RS23885 () | 121903..122301 | + | 399 | Protein_121 | tRNA(fMet)-specific endonuclease VapC | - |
| HF677_RS23890 () | 122398..122652 | - | 255 | WP_095715681.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin Detail |
| HF677_RS23895 () | 122649..122900 | - | 252 | WP_095715682.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| HF677_RS23900 () | 123139..123894 | - | 756 | WP_095715683.1 | complement resistance protein TraT | - |
| HF677_RS23905 () | 124032..124946 | - | 915 | WP_095715684.1 | hypothetical protein | - |
| HF677_RS23910 () | 124960..127812 | - | 2853 | WP_095715685.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HF677_RS23915 () | 127812..129179 | - | 1368 | WP_095715686.1 | conjugal transfer protein TraH | - |
| HF677_RS23920 () | 129299..129649 | + | 351 | WP_095715687.1 | hypothetical protein | - |
| HF677_RS23925 () | 129643..130155 | - | 513 | WP_141244101.1 | hypothetical protein | - |
| HF677_RS23930 () | 130256..130804 | - | 549 | WP_095715689.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HF677_RS23935 () | 130806..131084 | - | 279 | WP_095715690.1 | hypothetical protein | - |
| HF677_RS23940 () | 131102..131887 | - | 786 | WP_095715691.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HF677_RS23945 () | 131889..133724 | - | 1836 | WP_095715711.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HF677_RS23950 () | 133724..134320 | - | 597 | WP_095715692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HF677_RS23955 () | 134332..135330 | - | 999 | WP_095715693.1 | conjugal transfer pilus assembly protein TraU | - |
| HF677_RS23960 () | 135327..135944 | - | 618 | WP_095715694.1 | type-F conjugative transfer system protein TraW | - |
| HF677_RS23965 () | 135941..136165 | - | 225 | WP_095715695.1 | TraR/DksA C4-type zinc finger protein | - |
| HF677_RS23970 () | 136169..136588 | - | 420 | WP_095715696.1 | type-F conjugative transfer system protein TrbI | - |
| HF677_RS23975 () | 136567..139173 | - | 2607 | WP_095715712.1 | type IV secretion system protein TraC | - |
| HF677_RS23980 () | 139203..139736 | - | 534 | WP_095715697.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HF677_RS23985 () | 139739..141079 | - | 1341 | WP_095715698.1 | conjugal transfer protein TraB | - |
| HF677_RS23990 () | 141072..141851 | - | 780 | WP_095715699.1 | type-F conjugative transfer system secretin TraK | - |
| HF677_RS23995 () | 141826..142404 | - | 579 | WP_095715700.1 | type IV conjugative transfer system protein TraE | - |
| HF677_RS24000 () | 142419..142718 | - | 300 | WP_095715701.1 | type IV conjugative transfer system protein TraL | - |
| HF677_RS24005 () | 142737..143108 | - | 372 | WP_095715702.1 | conjugal transfer protein TraA | - |
| HF677_RS24010 () | 143402..143608 | - | 207 | WP_095715703.1 | TraY domain-containing protein | - |
| HF677_RS24015 () | 143694..144425 | - | 732 | WP_095715704.1 | hypothetical protein | - |
| HF677_RS24020 () | 144600..144998 | - | 399 | WP_095715713.1 | relaxosome protein TraM | - |
| HF677_RS24025 () | 145499..145954 | + | 456 | WP_095715705.1 | hypothetical protein | VF |
| HF677_RS24030 () | 146529..146834 | - | 306 | WP_095715706.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HF677_RS24035 () | 146957..147790 | - | 834 | WP_095715707.1 | type I restriction-modification system subunit M | - |
| HF677_RS24040 () | 147839..147985 | - | 147 | WP_095715708.1 | succinate dehydrogenase flavoprotein subunit | - |
| HF677_RS24045 () | 148079..148423 | - | 345 | WP_095715709.1 | hypothetical protein | - |
| HF677_RS24050 () | 148488..148871 | - | 384 | WP_172864465.1 | ammonia monooxygenase | - |
| HF677_RS24055 () | 149710..150081 | + | 372 | WP_095715336.1 | DUF305 domain-containing protein | - |
| HF677_RS24060 () | 150221..150943 | - | 723 | WP_095715337.1 | plasmid SOS inhibition protein A | - |
| HF677_RS24065 () | 150940..151374 | - | 435 | WP_095715338.1 | conjugation system SOS inhibitor PsiB | - |
| HF677_RS24070 () | 151419..153398 | - | 1980 | WP_095715339.1 | ParB/RepB/Spo0J family partition protein | - |
| HF677_RS24075 () | 153469..153708 | - | 240 | WP_095715340.1 | DUF905 domain-containing protein | - |
| HF677_RS24080 () | 154415..154669 | - | 255 | WP_172864466.1 | DNA polymerase III subunit theta | - |
| HF677_RS24085 () | 154856..155047 | - | 192 | WP_008455403.1 | hypothetical protein | - |
| HF677_RS24090 () | 155090..155596 | - | 507 | WP_095715532.1 | antirestriction protein ArdA | - |
| HF677_RS24095 () | 156001..156411 | - | 411 | WP_095715531.1 | DUF1380 domain-containing protein | - |
| HF677_RS24100 () | 156460..156885 | - | 426 | WP_095715530.1 | antirestriction protein | - |
| HF677_RS24105 () | 156851..157180 | - | 330 | Protein_165 | DUF1472 domain-containing protein | - |
| HF677_RS24110 () | 157300..158082 | - | 783 | WP_095715529.1 | hypothetical protein | - |
| HF677_RS24115 () | 158136..158555 | - | 420 | WP_095715528.1 | DUF1380 domain-containing protein | - |
| HF677_RS24120 () | 158567..158788 | - | 222 | WP_095715527.1 | hypothetical protein | - |
| HF677_RS24125 () | 158788..159471 | - | 684 | WP_095715526.1 | DNA methylase | - |
| HF677_RS24130 () | 159994..160854 | - | 861 | WP_095715524.1 | RepB family plasmid replication initiator protein | - |
| HF677_RS24135 () | 161238..161660 | + | 423 | WP_095715523.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HF677_RS24140 () | 161660..162931 | + | 1272 | WP_095715522.1 | Y-family DNA polymerase | - |
| HF677_RS24145 () | 163078..164049 | - | 972 | WP_095715521.1 | ParB/RepB/Spo0J family partition protein | - |
| HF677_RS24150 () | 164046..165251 | - | 1206 | WP_095715520.1 | Plasmid partition protein A | VF |
| HF677_RS24155 () | 165502..165879 | - | 378 | Protein_175 | tyrosine-type recombinase/integrase | - |
| HF677_RS24160 () | 165974..166144 | - | 171 | WP_168726205.1 | tyrosine-type recombinase/integrase | - |
| HF677_RS24165 () | 166344..166595 | + | 252 | WP_095715194.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HF677_RS24170 () | 166592..166879 | + | 288 | WP_095715193.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HF677_RS24175 () | 166885..167250 | + | 366 | WP_141244065.1 | hypothetical protein | - |
| HF677_RS24180 () | 167247..167555 | + | 309 | WP_095715192.1 | hypothetical protein | - |
| HF677_RS24185 () | 167706..167936 | + | 231 | WP_095715191.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HF677_RS24190 () | 167933..168349 | + | 417 | WP_095715190.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HF677_RS24195 () | 168382..169125 | + | 744 | WP_095715189.1 | hypothetical protein | - |
| HF677_RS24200 () | 169361..169888 | - | 528 | WP_095715188.1 | GNAT family N-acetyltransferase | - |
| HF677_RS24205 () | 169892..170161 | - | 270 | WP_080172499.1 | DUF1778 domain-containing protein | - |
| HF677_RS24210 () | 170672..170878 | - | 207 | WP_095715186.1 | DUF4222 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|