MGE detailed information
MGE type: Conjugative plasmid MGE length: 139635 bp
Accession: NZ_CP051689 Location: 1..139635 Organism: Escherichia coli strain SCU-387 Replicon: plasmid pSCU-387-1
Accession: NZ_CP051689 Location: 1..139635 Organism: Escherichia coli strain SCU-387 Replicon: plasmid pSCU-387-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ48_RS25810 () | 1..978 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| HHJ48_RS25815 () | 1221..1961 | - | 741 | WP_021515439.1 | tyrosine-type recombinase/integrase | - |
| HHJ48_RS25820 () | 2082..2270 | - | 189 | WP_032144810.1 | hypothetical protein | - |
| HHJ48_RS25825 () | 2632..3801 | + | 1170 | WP_001620890.1 | hypothetical protein | - |
| HHJ48_RS26885 () | 4156..4274 | - | 119 | Protein_4 | IS110 family transposase | - |
| HHJ48_RS25835 () | 4620..4892 | - | 273 | WP_072002821.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HHJ48_RS25845 () | 7688..9658 | + | 1971 | WP_097403174.1 | Hemin receptor | VF |
| HHJ48_RS25850 () | 9677..10468 | + | 792 | WP_001774400.1 | DUF4198 domain-containing protein | - |
| HHJ48_RS25855 () | 10627..11196 | - | 570 | WP_028985823.1 | hypothetical protein | - |
| HHJ48_RS25860 () | 11470..13338 | - | 1869 | WP_021515447.1 | Lipase | VF |
| HHJ48_RS25865 () | 13397..25045 | - | 11649 | WP_169062308.1 | hypothetical protein | - |
| HHJ48_RS25870 () | 25320..26567 | - | 1248 | WP_001620879.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| HHJ48_RS25875 () | 26627..28774 | - | 2148 | WP_001620877.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| HHJ48_RS25880 () | 28771..30039 | - | 1269 | WP_032150216.1 | TolC family protein | - |
| HHJ48_RS25885 () | 30097..30399 | - | 303 | WP_001620873.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HHJ48_RS25890 () | 30948..32096 | + | 1149 | Protein_16 | IS3 family transposase | - |
| HHJ48_RS25895 () | 32132..32311 | - | 180 | WP_001620859.1 | hypothetical protein | - |
| HHJ48_RS25900 () | 32921..34036 | + | 1116 | WP_001620858.1 | Elloramycin glycosyltransferase ElmGT | VF |
| HHJ48_RS25905 () | 34176..37835 | + | 3660 | WP_021552516.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HHJ48_RS25910 () | 37939..39168 | + | 1230 | WP_097403177.1 | Enterochelin esterase | VF |
| HHJ48_RS25915 () | 39253..40209 | + | 957 | WP_001620854.1 | Ferri-bacillibactin esterase BesA | VF |
| HHJ48_RS25920 () | 40254..42431 | - | 2178 | WP_115766400.1 | Ferrienterobactin receptor | VF |
| HHJ48_RS25925 () | 43201..44235 | - | 1035 | WP_097403179.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| HHJ48_RS25930 () | 44795..45103 | - | 309 | WP_097403180.1 | hypothetical protein | - |
| HHJ48_RS25935 () | 45185..45382 | + | 198 | Protein_25 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HHJ48_RS25940 () | 45382..45474 | - | 93 | Protein_26 | colicin V | - |
| HHJ48_RS25945 () | 45461..45698 | - | 238 | Protein_27 | colicin V immunity protein | - |
| HHJ48_RS26890 () | 46080..46620 | + | 541 | Protein_28 | CPBP family intramembrane metalloprotease | - |
| HHJ48_RS25960 () | 46620..46763 | - | 144 | Protein_29 | IS3 family transposase ISEc16 | Transposase |
| HHJ48_RS25965 () | 48806..48945 | + | 140 | Protein_30 | site-specific integrase | - |
| HHJ48_RS25970 () | 49225..49990 | + | 766 | Protein_31 | IS3 family transposase IS2 | Transposase |
| HHJ48_RS25975 () | 50368..51120 | + | 753 | WP_169062309.1 | Chaperone protein caf1M | VF |
| HHJ48_RS25980 () | 51183..53699 | + | 2517 | WP_162899374.1 | F1 capsule-anchoring protein | VF |
| HHJ48_RS25985 () | 53715..54131 | + | 417 | WP_097403185.1 | Protein AfaD | VF |
| HHJ48_RS25990 () | 54245..54730 | + | 486 | WP_115766403.1 | hypothetical protein | - |
| HHJ48_RS25995 () | 55167..55583 | + | 417 | WP_021515389.1 | SdiA-regulated domain-containing protein | - |
| HHJ48_RS26000 () | 55788..56579 | - | 792 | WP_097403187.1 | Virulence regulon transcriptional activator VirF | VF |
| HHJ48_RS26005 () | 56855..57871 | - | 1017 | Protein_38 | IS3 family transposase | - |
| HHJ48_RS26010 () | 58000..59151 | + | 1152 | Protein_39 | IS3 family transposase | - |
| HHJ48_RS26015 () | 59614..60789 | - | 1176 | WP_001020414.1 | putative protein YncE | VF |
| HHJ48_RS26020 () | 60858..63119 | - | 2262 | WP_097403218.1 | putative TonB-dependent receptor | VF |
| HHJ48_RS26025 () | 63288..64064 | - | 777 | WP_097403217.1 | energy transducer TonB | - |
| HHJ48_RS26030 () | 64072..64947 | - | 876 | WP_123004305.1 | ChaN family lipoprotein | - |
| HHJ48_RS26035 () | 65224..65718 | + | 495 | Protein_44 | IS91 family transposase ISSbo1 | Transposase |
| HHJ48_RS26040 () | 65984..66259 | - | 276 | WP_021515398.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HHJ48_RS26045 () | 66259..66543 | - | 285 | WP_024187480.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HHJ48_RS26050 () | 67090..67518 | - | 429 | WP_097403215.1 | Exc2 family lipoprotein | - |
| HHJ48_RS26055 () | 67599..67697 | - | 99 | Protein_48 | entry exclusion protein 1 | - |
| HHJ48_RS26060 () | 67782..68171 | + | 390 | WP_001282151.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ48_RS26065 () | 68168..68515 | + | 348 | WP_021548229.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ48_RS26070 () | 68565..70103 | + | 1539 | WP_016245515.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ48_RS26075 () | 70184..70447 | - | 264 | Protein_52 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ48_RS26080 () | 70437..70700 | - | 264 | WP_001089474.1 | hypothetical protein | - |
| HHJ48_RS26895 () | 70807..71067 | - | 261 | WP_097403166.1 | hypothetical protein | - |
| HHJ48_RS26085 () | 71768..72625 | - | 858 | WP_123004306.1 | incFII family plasmid replication initiator RepA | - |
| HHJ48_RS26090 () | 72618..72692 | - | 75 | WP_001367777.1 | RepA leader peptide Tap | - |
| HHJ48_RS26095 () | 72926..73183 | - | 258 | WP_001620838.1 | replication regulatory protein RepA | - |
| HHJ48_RS26100 () | 73485..74183 | - | 699 | WP_115766398.1 | acid phosphatase AphA | - |
| HHJ48_RS26900 () | 74369..74662 | - | 294 | WP_211202395.1 | hypothetical protein | - |
| HHJ48_RS26105 () | 74817..74966 | - | 150 | WP_021515405.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 75011..75070 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 75011..75070 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 75011..75070 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 75011..75070 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| HHJ48_RS26110 () | 75245..75553 | - | 309 | WP_001620832.1 | hypothetical protein | - |
| HHJ48_RS26115 () | 75550..76236 | - | 687 | WP_001620830.1 | DUF2726 domain-containing protein | - |
| HHJ48_RS26120 () | 76274..76483 | - | 210 | WP_097424846.1 | hemolysin expression modulator Hha | - |
| HHJ48_RS26125 () | 76529..76990 | - | 462 | WP_052983101.1 | thermonuclease family protein | - |
| HHJ48_RS26130 () | 77235..77447 | - | 213 | WP_097424844.1 | ANR family transcriptional regulator | - |
| HHJ48_RS26135 () | 77582..78142 | - | 561 | WP_001620825.1 | fertility inhibition protein FinO | - |
| HHJ48_RS26140 () | 78197..78943 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ48_RS26145 () | 78963..84233 | - | 5271 | WP_115766397.1 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ48_RS26150 () | 84233..86467 | - | 2235 | WP_169062310.1 | type IV conjugative transfer system coupling protein TraD | - |
| HHJ48_RS26155 () | 86518..87255 | - | 738 | WP_162825037.1 | hypothetical protein | - |
| HHJ48_RS26160 () | 87458..88189 | - | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| HHJ48_RS26165 () | 88238..88723 | - | 486 | WP_000605870.1 | hypothetical protein | - |
| HHJ48_RS26170 () | 88739..91561 | - | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HHJ48_RS26175 () | 91558..92931 | - | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HHJ48_RS26180 () | 92918..93343 | - | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| HHJ48_RS26185 () | 93291..93638 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HHJ48_RS26190 () | 93568..94113 | - | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HHJ48_RS26195 () | 94100..94384 | - | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HHJ48_RS26200 () | 94503..94847 | - | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| HHJ48_RS26205 () | 94861..95604 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HHJ48_RS26210 () | 95597..95854 | - | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| HHJ48_RS26215 () | 95881..97731 | - | 1851 | WP_001617740.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HHJ48_RS26220 () | 97728..98366 | - | 639 | WP_012881126.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HHJ48_RS26225 () | 98375..98680 | - | 306 | WP_000224418.1 | hypothetical protein | - |
| HHJ48_RS26230 () | 98710..99022 | - | 313 | Protein_85 | TraU family protein | - |
| HHJ48_RS26235 () | 99199..99508 | - | 310 | Protein_86 | hypothetical protein | - |
| HHJ48_RS26240 () | 99534..100526 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| HHJ48_RS26245 () | 100523..101155 | - | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| HHJ48_RS26250 () | 101152..101538 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| HHJ48_RS26255 () | 101535..104165 | - | 2631 | WP_021515415.1 | type IV secretion system protein TraC | - |
| HHJ48_RS26260 () | 104291..104638 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| HHJ48_RS26265 () | 104666..104884 | - | 219 | WP_001405917.1 | hypothetical protein | - |
| HHJ48_RS26270 () | 104964..105437 | - | 474 | WP_115766406.1 | hypothetical protein | - |
| HHJ48_RS26275 () | 105430..105651 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HHJ48_RS26280 () | 105786..106301 | - | 516 | WP_001681800.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ48_RS26285 () | 106298..106651 | - | 354 | WP_072042614.1 | conjugal transfer protein TrbD | - |
| HHJ48_RS26290 () | 106605..107195 | - | 591 | WP_062863283.1 | conjugal transfer protein TraP | - |
| HHJ48_RS26295 () | 107185..108612 | - | 1428 | WP_033807957.1 | conjugal transfer protein TraB | - |
| HHJ48_RS26300 () | 108612..109340 | - | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ48_RS26305 () | 109327..109893 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| HHJ48_RS26310 () | 109915..110226 | - | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| HHJ48_RS26315 () | 110241..110603 | - | 363 | WP_001098993.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ48_RS26320 () | 110636..110863 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ48_RS26325 () | 111000..111671 | - | 672 | WP_115766405.1 | conjugal transfer transcriptional regulator TraJ | - |
| HHJ48_RS26330 () | 111865..112248 | - | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| HHJ48_RS26335 () | 112571..113173 | + | 603 | WP_001323326.1 | hypothetical protein | VF |
| HHJ48_RS26340 () | 113469..114290 | - | 822 | WP_162825039.1 | DUF945 domain-containing protein | - |
| HHJ48_RS26345 () | 114409..114696 | - | 288 | WP_000107526.1 | hypothetical protein | - |
| HHJ48_RS26355 () | 115624..115785 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 115831..116048 | - | 218 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115831..116048 | - | 218 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115831..116048 | - | 218 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115831..116048 | - | 218 | NuclAT_0 | - | Antitoxin Detail |
| HHJ48_RS26360 () | 116017..116778 | - | 762 | Protein_110 | plasmid SOS inhibition protein A | - |
| HHJ48_RS26365 () | 117285..119229 | - | 1945 | Protein_111 | ParB/RepB/Spo0J family partition protein | - |
| HHJ48_RS26370 () | 119291..119523 | - | 233 | Protein_112 | DUF905 family protein | - |
| HHJ48_RS26375 () | 119650..120103 | - | 454 | Protein_113 | single-stranded DNA-binding protein | - |
| HHJ48_RS26380 () | 120970..121407 | - | 438 | Protein_114 | class I SAM-dependent methyltransferase | - |
| HHJ48_RS26385 () | 121577..122798 | - | 1222 | Protein_115 | DUF3560 domain-containing protein | - |
| HHJ48_RS26390 () | 122791..122937 | - | 147 | WP_169062311.1 | hypothetical protein | - |
| HHJ48_RS26395 () | 122989..123218 | - | 230 | Protein_117 | hypothetical protein | - |
| HHJ48_RS26400 () | 123715..124221 | + | 507 | Protein_118 | hypothetical protein | - |
| HHJ48_RS26405 () | 124198..124389 | - | 192 | WP_169062312.1 | hypothetical protein | - |
| HHJ48_RS26410 () | 124386..124808 | - | 423 | WP_000271739.1 | DUF1380 family protein | - |
| HHJ48_RS26415 () | 124855..125157 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| HHJ48_RS26425 () | 125692..126462 | - | 771 | WP_097403223.1 | hypothetical protein | - |
| HHJ48_RS26430 () | 126507..126941 | - | 435 | WP_000274450.1 | DUF1380 family protein | - |
| HHJ48_RS26435 () | 126955..127176 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| HHJ48_RS26440 () | 127177..127860 | - | 684 | WP_024249881.1 | DNA methylase | - |
| HHJ48_RS26445 () | 127936..128247 | - | 312 | WP_162497511.1 | hypothetical protein | - |
| HHJ48_RS26450 () | 128244..129146 | - | 903 | WP_097403258.1 | DUF1281 domain-containing protein | - |
| HHJ48_RS26455 () | 129564..129812 | + | 249 | WP_000619112.1 | DinI-like family protein | - |
| HHJ48_RS26460 () | 129809..130243 | + | 435 | Protein_129 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ48_RS26465 () | 130243..131513 | + | 1271 | Protein_130 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HHJ48_RS26470 () | 131518..131910 | - | 393 | WP_000340835.1 | plasmid partitioning/stability family protein | - |
| HHJ48_RS26475 () | 131915..132886 | - | 972 | WP_001103694.1 | hypothetical protein | - |
| HHJ48_RS26480 () | 133115..133759 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| HHJ48_RS26485 () | 133753..134028 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HHJ48_RS26490 () | 134166..134975 | - | 810 | WP_032305265.1 | site-specific integrase | - |
| HHJ48_RS26495 () | 134976..135281 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | - |
| HHJ48_RS26500 () | 135283..135501 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| HHJ48_RS26505 () | 137820..138461 | + | 642 | WP_000990668.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|