MGE detailed information
MGE type: Conjugative plasmid MGE length: 99009 bp
Accession: NZ_CP051653 Location: 1..99009 Organism: Escherichia coli strain RM13752 Replicon: plasmid pRM13752
Accession: NZ_CP051653 Location: 1..99009 Organism: Escherichia coli strain RM13752 Replicon: plasmid pRM13752
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D06_RS25810 () | 6236..8146 | - | 1911 | Protein_0 | hypothetical protein | VF |
| F7D06_RS25815 () | 8526..9027 | - | 502 | Protein_1 | thermonuclease family protein | - |
| F7D06_RS25820 () | 9224..9525 | + | 302 | Protein_2 | IS3 family transposase ISEc31 | Transposase |
| F7D06_RS25825 () | 9538..10690 | - | 1153 | Protein_3 | IS30-like element IS30 family transposase | - |
| F7D06_RS25830 () | 10755..11179 | + | 425 | Protein_4 | IS3 family transposase | - |
| F7D06_RS25835 () | 11852..13360 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| F7D06_RS25840 () | 13441..13929 | + | 489 | Protein_6 | IS3 family transposase ISEc31 | Transposase |
| F7D06_RS25845 () | 14093..14329 | - | 237 | Protein_7 | DUF1380 family protein | - |
| F7D06_RS25850 () | 14343..14564 | - | 222 | WP_001104898.1 | hypothetical protein | - |
| F7D06_RS25855 () | 14565..15248 | - | 684 | WP_000086174.1 | DNA methylase | - |
| F7D06_RS25860 () | 15336..15449 | + | 114 | Protein_10 | DinI-like family protein | - |
| F7D06_RS25865 () | 15446..15883 | + | 438 | WP_172636184.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| F7D06_RS25870 () | 15883..17157 | + | 1275 | WP_085004465.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| F7D06_RS25875 () | 17159..17575 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| F7D06_RS25880 () | 17568..18548 | - | 981 | WP_077166745.1 | plasmid segregation protein ParM | - |
| F7D06_RS25885 () | 18962..19270 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| F7D06_RS25890 () | 19357..20001 | - | 645 | WP_001144036.1 | ParA family protein | - |
| F7D06_RS25895 () | 20180..20986 | - | 807 | WP_063121642.1 | site-specific integrase | - |
| F7D06_RS25900 () | 20987..21292 | - | 306 | WP_032285172.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| F7D06_RS25905 () | 21294..21512 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| F7D06_RS25910 () | 22361..23599 | + | 1239 | WP_050940296.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| F7D06_RS25915 () | 23583..24410 | + | 828 | WP_172636186.1 | HAD-IIB family hydrolase | - |
| F7D06_RS25920 () | 24413..25429 | + | 1017 | WP_032280058.1 | Gfo/Idh/MocA family oxidoreductase | - |
| F7D06_RS25925 () | 25431..25700 | + | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| F7D06_RS25930 () | 25697..27229 | + | 1533 | WP_135259177.1 | NAD(P)-binding domain-containing protein | - |
| F7D06_RS25935 () | 27261..27713 | - | 453 | WP_001825139.1 | N-acetyltransferase | - |
| F7D06_RS25940 () | 28040..28297 | + | 258 | WP_000371887.1 | hypothetical protein | - |
| F7D06_RS25945 () | 28297..28887 | + | 591 | WP_032285175.1 | hypothetical protein | - |
| F7D06_RS25950 () | 29070..29849 | - | 780 | WP_001323403.1 | IS21 family transposase IS100kyp | Transposase |
| F7D06_RS25955 () | 29849..30871 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| F7D06_RS25960 () | 30957..31526 | - | 570 | Protein_30 | conjugal transfer protein TraN | - |
| F7D06_RS25965 () | 31523..32161 | - | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| F7D06_RS25970 () | 32170..33162 | - | 993 | WP_050940392.1 | conjugal transfer pilus assembly protein TraU | - |
| F7D06_RS25975 () | 33159..33791 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| F7D06_RS25980 () | 33788..34174 | - | 387 | WP_050940390.1 | type-F conjugative transfer system protein TrbI | - |
| F7D06_RS25985 () | 34171..36798 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| F7D06_RS25990 () | 36958..37179 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| F7D06_RS25995 () | 37314..37829 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| F7D06_RS26000 () | 37826..38077 | - | 252 | WP_050940388.1 | conjugal transfer protein TrbG | - |
| F7D06_RS26005 () | 38089..38319 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| F7D06_RS26010 () | 38273..38863 | - | 591 | WP_050940386.1 | conjugal transfer protein TraP | - |
| F7D06_RS26015 () | 38853..40280 | - | 1428 | WP_050940383.1 | conjugal transfer protein TraB | - |
| F7D06_RS26020 () | 40280..40984 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| F7D06_RS26025 () | 40995..41561 | - | 567 | WP_050940381.1 | type IV conjugative transfer system protein TraE | - |
| F7D06_RS26030 () | 41583..41894 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| F7D06_RS26035 () | 41909..42268 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| F7D06_RS26040 () | 42302..42529 | - | 228 | WP_050940379.1 | conjugal transfer relaxosome protein TraY | - |
| F7D06_RS26045 () | 42623..43309 | - | 687 | WP_050940377.1 | PAS domain-containing protein | - |
| F7D06_RS26050 () | 43500..43883 | - | 384 | WP_050940374.1 | relaxosome protein TraM | - |
| F7D06_RS26055 () | 44217..44807 | + | 591 | WP_169072903.1 | hypothetical protein | VF |
| F7D06_RS26060 () | 45103..45681 | - | 579 | Protein_50 | DUF945 domain-containing protein | - |
| F7D06_RS26065 () | 45768..46790 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| F7D06_RS26070 () | 46790..47569 | + | 780 | WP_001323403.1 | IS21 family transposase IS100kyp | Transposase |
| F7D06_RS26075 () | 47637..48881 | + | 1245 | Protein_53 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| F7D06_RS26080 () | 48908..49165 | + | 258 | WP_050939798.1 | conjugal transfer protein TrbE | - |
| F7D06_RS26085 () | 49158..49901 | + | 744 | WP_050939800.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| F7D06_RS26090 () | 50026..50307 | + | 282 | WP_000549794.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| F7D06_RS26095 () | 50294..50839 | + | 546 | WP_050939804.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| F7D06_RS26100 () | 50769..51110 | + | 342 | WP_072095529.1 | P-type conjugative transfer protein TrbJ | - |
| F7D06_RS26105 () | 51097..51489 | + | 393 | WP_050939810.1 | F-type conjugal transfer protein TrbF | - |
| F7D06_RS26110 () | 51476..52849 | + | 1374 | WP_050939813.1 | conjugal transfer protein TraH | - |
| F7D06_RS26115 () | 52846..55671 | + | 2826 | WP_050939816.1 | conjugal transfer mating pair stabilization protein TraG | - |
| F7D06_RS26120 () | 55668..56177 | + | 510 | Protein_62 | conjugal transfer entry exclusion protein TraS | - |
| F7D06_RS26125 () | 56191..56922 | + | 732 | WP_000850423.1 | complement resistance protein TraT | - |
| F7D06_RS26130 () | 57175..59355 | + | 2181 | WP_069903968.1 | type IV conjugative transfer system coupling protein TraD | - |
| F7D06_RS26135 () | 59364..59762 | - | 399 | WP_000911315.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| F7D06_RS26140 () | 59762..59989 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| F7D06_RS26145 () | 60071..65341 | + | 5271 | WP_050939819.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| F7D06_RS26150 () | 65361..66101 | + | 741 | WP_050939821.1 | conjugal transfer pilus acetylase TraX | - |
| F7D06_RS26155 () | 66160..67020 | + | 861 | WP_000868986.1 | hypothetical protein | VF |
| F7D06_RS26160 () | 67123..67680 | + | 558 | WP_000139319.1 | fertility inhibition protein FinO | - |
| F7D06_RS26165 () | 67835..68038 | + | 204 | WP_001327131.1 | hypothetical protein | - |
| F7D06_RS26170 () | 68783..69244 | + | 462 | WP_000760078.1 | thermonuclease family protein | - |
| F7D06_RS26175 () | 69347..69730 | + | 384 | WP_001109066.1 | hypothetical protein | - |
| - () | 69905..69966 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69905..69966 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69905..69966 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 69905..69966 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| F7D06_RS26180 () | 69953..70159 | + | 207 | WP_047649939.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| F7D06_RS26185 () | 70440..70688 | + | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| F7D06_RS26190 () | 70935..71009 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| F7D06_RS26195 () | 71002..71859 | + | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| F7D06_RS26200 () | 72774..72950 | + | 177 | WP_157905840.1 | hypothetical protein | - |
| F7D06_RS26205 () | 72983..73879 | - | 897 | Protein_79 | IS3 family transposase ISKpn38 | Transposase |
| F7D06_RS26210 () | 73949..74953 | + | 1005 | WP_050939068.1 | IS110 family transposase ISSfl8 | Transposase |
| F7D06_RS26215 () | 75204..75869 | - | 666 | WP_072095473.1 | IS3 family transposase ISKpn38 | Transposase |
| F7D06_RS26220 () | 75904..76062 | + | 159 | WP_077793267.1 | toxin-antitoxin system protein | - |
| F7D06_RS26225 () | 76059..76336 | + | 278 | Protein_83 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| F7D06_RS26230 () | 76382..76849 | + | 468 | WP_050939063.1 | DNA polymerase III subunit epsilon | - |
| F7D06_RS26235 () | 77174..77632 | + | 459 | WP_050939085.1 | hypothetical protein | - |
| F7D06_RS26240 () | 78225..78506 | + | 282 | WP_050939060.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| F7D06_RS26245 () | 78506..78781 | + | 276 | WP_050939058.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| F7D06_RS26250 () | 78887..79168 | + | 282 | WP_050939055.1 | hypothetical protein | - |
| F7D06_RS26255 () | 79405..79656 | - | 252 | WP_050939053.1 | hypothetical protein | - |
| F7D06_RS26260 () | 80263..81415 | - | 1153 | Protein_90 | IS3 family transposase | - |
| F7D06_RS26265 () | 81474..81716 | + | 243 | Protein_91 | transposase | - |
| F7D06_RS26270 () | 82981..83499 | + | 519 | WP_050939047.1 | hypothetical protein | VF |
| F7D06_RS26275 () | 83500..86574 | + | 3075 | WP_050939044.1 | hypothetical protein | VF |
| F7D06_RS26280 () | 86645..88768 | + | 2124 | WP_050939042.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F7D06_RS26285 () | 88787..90223 | + | 1437 | WP_050939040.1 | hypothetical protein | VF |
| F7D06_RS26290 () | 90829..91536 | + | 708 | Protein_96 | IS3 family transposase IS911 | Transposase |
| F7D06_RS26295 () | 92212..92567 | + | 356 | Protein_97 | reverse transcriptase | - |
| F7D06_RS26300 () | 92539..93240 | + | 702 | WP_169072621.1 | reverse transcriptase/maturase family protein | - |
| F7D06_RS26305 () | 93213..93598 | + | 386 | Protein_99 | maturase | - |
| F7D06_RS26310 () | 93679..94140 | + | 462 | Protein_100 | IS3 family transposase | - |
| F7D06_RS26315 () | 94267..97311 | + | 3045 | WP_050939030.1 | hypothetical protein | VF |
| F7D06_RS26320 () | 97596..98249 | + | 654 | Protein_102 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|