MGE detailed information
MGE type: Conjugative plasmid MGE length: 143259 bp
Accession: NZ_CP051224 Location: 1..143259 Organism: Escherichia coli strain SCZE5 Replicon: plasmid pSCZE2
Accession: NZ_CP051224 Location: 1..143259 Organism: Escherichia coli strain SCZE5 Replicon: plasmid pSCZE2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF562_RS23430 () | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| HF562_RS23435 () | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| HF562_RS23440 () | 2124..2312 | - | 189 | WP_065203495.1 | serine/threonine protein kinase | - |
| HF562_RS23445 () | 2686..3588 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| HF562_RS23450 () | 3657..4766 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| HF562_RS23455 () | 5199..6152 | - | 954 | WP_000280980.1 | hypothetical protein | VF |
| HF562_RS23460 () | 6256..6645 | + | 390 | WP_001332050.1 | outer membrane protease | - |
| HF562_RS23465 () | 7425..7583 | - | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| HF562_RS23470 () | 7767..8506 | + | 740 | Protein_8 | IS3 family transposase IS629 | Transposase |
| HF562_RS23475 () | 9179..10687 | + | 1509 | WP_064055679.1 | group II intron reverse transcriptase/maturase | - |
| HF562_RS23480 () | 10777..11250 | + | 474 | Protein_10 | IS3 family transposase IS629 | Transposase |
| HF562_RS23485 () | 11398..11666 | - | 269 | Protein_11 | IS3 family transposase ISLad1 | Transposase |
| HF562_RS23490 () | 11723..12420 | + | 698 | Protein_12 | IS1 family transposase | - |
| HF562_RS23495 () | 12498..13887 | - | 1390 | Protein_13 | ISNCY family transposase ISKpn21 | Transposase |
| HF562_RS23500 () | 14197..14346 | - | 150 | Protein_14 | IS3 family transposase IS2 | Transposase |
| HF562_RS23505 () | 14524..15717 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| HF562_RS23510 () | 16940..18176 | - | 1237 | Protein_16 | IS3 family transposase IS2 | Transposase |
| HF562_RS23515 () | 18803..19096 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| HF562_RS23520 () | 19154..19353 | - | 200 | Protein_18 | lysis protein | - |
| HF562_RS23525 () | 19907..21011 | + | 1105 | Protein_19 | IS481 family transposase ISKpn28 | Transposase |
| HF562_RS23530 () | 22247..23362 | + | 1116 | WP_001318220.1 | hypothetical protein | VF |
| HF562_RS23535 () | 23502..27161 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| HF562_RS23540 () | 27265..28494 | + | 1230 | WP_000933675.1 | hypothetical protein | VF |
| HF562_RS23545 () | 28579..29535 | + | 957 | WP_064055648.1 | hypothetical protein | VF |
| HF562_RS23550 () | 29580..31757 | - | 2178 | WP_001222186.1 | Vitamin B12 transporter BtuB | VF |
| HF562_RS23555 () | 31992..32689 | + | 698 | Protein_25 | IS1 family transposase | - |
| HF562_RS23560 () | 32700..32903 | - | 204 | WP_001259759.1 | colicin V family bacteriocin | - |
| HF562_RS23565 () | 32881..33117 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| HF562_RS23570 () | 33581..33862 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| HF562_RS23575 () | 34035..34202 | + | 168 | Protein_29 | colicin-B | - |
| HF562_RS23580 () | 34220..34747 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| HF562_RS23585 () | 34991..35806 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| HF562_RS23590 () | 35856..36209 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| HF562_RS23595 () | 36387..37178 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| HF562_RS23600 () | 37175..37864 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| HF562_RS23605 () | 37908..38258 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| HF562_RS23610 () | 38790..42611 | - | 3822 | WP_064055658.1 | hypothetical protein | - |
| HF562_RS23615 () | 42855..43016 | + | 162 | WP_000251882.1 | hypothetical protein | - |
| HF562_RS23620 () | 43034..43381 | - | 348 | WP_000142450.1 | hypothetical protein | - |
| HF562_RS23625 () | 43683..44165 | - | 483 | WP_001311056.1 | hypothetical protein | - |
| HF562_RS23630 () | 44282..45130 | - | 849 | WP_023154360.1 | 3'-5' exonuclease | - |
| HF562_RS23635 () | 45176..45457 | - | 282 | WP_000969990.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HF562_RS23640 () | 45454..45531 | - | 78 | Protein_42 | toxin-antitoxin system protein | - |
| HF562_RS23645 () | 45564..46280 | - | 717 | Protein_43 | Tn3 family transposase | - |
| HF562_RS23650 () | 46314..47612 | - | 1299 | Protein_44 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HF562_RS23655 () | 47680..48384 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23660 () | 48578..48964 | + | 387 | WP_063102497.1 | bleomycin binding protein | - |
| HF562_RS23665 () | 49284..49676 | - | 393 | WP_168728577.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| HF562_RS23670 () | 50011..50715 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23675 () | 50772..51104 | - | 333 | Protein_49 | IS6 family transposase IS15 | Transposase |
| HF562_RS23680 () | 51098..51445 | - | 348 | WP_000679427.1 | Spermidine export protein MdtJ | ARG |
| HF562_RS23685 () | 51609..52400 | - | 792 | WP_001206356.1 | hypothetical protein | ARG |
| HF562_RS23690 () | 52406..52696 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| HF562_RS23695 () | 52808..53305 | - | 498 | WP_001083725.1 | hypothetical protein | ARG |
| HF562_RS23700 () | 53450..54463 | + | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| HF562_RS23705 () | 54666..55016 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| HF562_RS23710 () | 55142..55411 | + | 270 | Protein_56 | recombinase family protein | - |
| HF562_RS23715 () | 55475..56179 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23720 () | 56281..56760 | + | 480 | WP_000888203.1 | Rrf2 family transcriptional regulator | - |
| HF562_RS23725 () | 56830..59982 | - | 3153 | WP_000347934.1 | Multidrug resistance protein MdtB | VF |
| HF562_RS23730 () | 60006..61181 | - | 1176 | WP_002914189.1 | Multidrug resistance protein MdtA | VF |
| HF562_RS23735 () | 61501..62205 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23740 () | 62334..63098 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| HF562_RS23745 () | 63591..64175 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| HF562_RS23750 () | 64175..65413 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| HF562_RS23755 () | 65410..66324 | - | 915 | WP_023063803.1 | hypothetical protein | ARG |
| HF562_RS23760 () | 66446..67150 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23765 () | 67187..68314 | - | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| HF562_RS23770 () | 68365..68592 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| HF562_RS23775 () | 68616..68807 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| HF562_RS23780 () | 69289..69831 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| HF562_RS23785 () | 69844..70704 | - | 861 | WP_000557454.1 | hypothetical protein | ARG |
| HF562_RS23790 () | 70847..71545 | + | 699 | Protein_72 | IS4 family transposase IS10R | Transposase |
| HF562_RS23795 () | 71610..72314 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23800 () | 72584..73141 | + | 558 | WP_001217881.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HF562_RS23805 () | 73324..74184 | + | 861 | WP_000027057.1 | hypothetical protein | ARG |
| HF562_RS23810 () | 74337..75233 | + | 897 | Protein_76 | TCR/Tet family MFS transporter | - |
| HF562_RS23815 () | 75200..75388 | - | 189 | Protein_77 | IS91 family transposase | - |
| HF562_RS23820 () | 75500..75805 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| HF562_RS23825 () | 75833..77047 | - | 1215 | WP_000214121.1 | Multidrug resistance protein MdtL | ARG |
| HF562_RS24965 () | 77264..77710 | - | 447 | Protein_80 | DUF3363 domain-containing protein | - |
| HF562_RS23835 () | 78179..79672 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| HF562_RS23840 () | 79883..80107 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| HF562_RS23845 () | 80104..80841 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HF562_RS23850 () | 80913..81617 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23855 () | 81681..82409 | + | 729 | Protein_85 | APH(6)-I family aminoglycoside O-phosphotransferase | - |
| HF562_RS23860 () | 82470..83174 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23865 () | 83325..84140 | + | 816 | WP_000018329.1 | hypothetical protein | ARG |
| HF562_RS23870 () | 84330..85034 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HF562_RS23875 () | 85099..86349 | - | 1251 | Protein_89 | transposase | - |
| HF562_RS23880 () | 86424..87092 | - | 669 | WP_001300294.1 | hypothetical protein | VF |
| HF562_RS23885 () | 87128..87364 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| HF562_RS23890 () | 87361..87723 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| HF562_RS23895 () | 87741..89357 | - | 1617 | WP_000105639.1 | mercury(II) reductase | - |
| HF562_RS23900 () | 89409..89831 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| HF562_RS23905 () | 89867..90142 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| HF562_RS23910 () | 90156..90506 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| HF562_RS23915 () | 90578..91012 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| HF562_RS23920 () | 91119..91816 | - | 698 | Protein_98 | IS1 family transposase | - |
| HF562_RS23925 () | 92065..92466 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HF562_RS23930 () | 92399..92656 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HF562_RS23935 () | 92749..93402 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| HF562_RS23940 () | 94341..95198 | - | 858 | WP_168728579.1 | incFII family plasmid replication initiator RepA | - |
| HF562_RS23945 () | 95191..95673 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| HF562_RS23950 () | 95666..95740 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| HF562_RS23955 () | 95972..96229 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HF562_RS23960 () | 96513..96719 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 96706..96767 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 96706..96767 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 96706..96767 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 96706..96767 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| HF562_RS23965 () | 97023..97097 | - | 75 | Protein_107 | endonuclease | - |
| HF562_RS23970 () | 97343..97555 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| HF562_RS23975 () | 97691..98251 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| HF562_RS23980 () | 98354..99214 | - | 861 | WP_000704513.1 | hypothetical protein | VF |
| HF562_RS23985 () | 99273..100019 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| HF562_RS23990 () | 100039..105309 | - | 5271 | WP_000986963.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| HF562_RS23995 () | 105391..105618 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HF562_RS24000 () | 105618..106016 | + | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HF562_RS24005 () | 106025..107071 | - | 1047 | Protein_115 | type IV secretion system DNA-binding domain-containing protein | - |
| HF562_RS24010 () | 107360..107581 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HF562_RS24015 () | 107716..108231 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HF562_RS24020 () | 108228..108479 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HF562_RS24025 () | 108491..108721 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| HF562_RS24030 () | 108675..109265 | - | 591 | WP_001376242.1 | conjugal transfer protein TraP | - |
| HF562_RS24035 () | 109255..110682 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| HF562_RS24040 () | 110682..111386 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HF562_RS24045 () | 111397..111963 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HF562_RS24050 () | 111985..112296 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HF562_RS24055 () | 112311..112676 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| HF562_RS24060 () | 112709..113104 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HF562_RS24065 () | 113203..113892 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| HF562_RS24070 () | 114079..114462 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| HF562_RS24075 () | 114783..115385 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| HF562_RS24080 () | 115682..116503 | - | 822 | WP_001234426.1 | DUF945 domain-containing protein | - |
| HF562_RS24085 () | 116621..116908 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| HF562_RS24095 () | 117829..117987 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 118031..118255 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 118031..118255 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 118031..118255 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 118031..118255 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HF562_RS24100 () | 118067..118255 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HF562_RS24105 () | 118267..118986 | - | 720 | WP_001276238.1 | plasmid SOS inhibition protein A | - |
| HF562_RS24110 () | 118983..119417 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| HF562_RS24115 () | 119472..119669 | - | 198 | Protein_136 | hypothetical protein | - |
| HF562_RS24120 () | 119697..119930 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| HF562_RS24125 () | 119998..120537 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| HF562_RS24970 () | 120563..120769 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| HF562_RS24135 () | 121908..122879 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HF562_RS24140 () | 122879..124045 | - | 1167 | WP_001238646.1 | hypothetical protein | VF |
| HF562_RS24145 () | 124345..125042 | - | 698 | Protein_142 | IS1 family transposase | - |
| HF562_RS24150 () | 125527..127728 | - | 2202 | WP_000973520.1 | Vitamin B12 transporter BtuB | VF |
| HF562_RS24155 () | 127810..129087 | - | 1278 | WP_000750130.1 | Ferredoxin--NADP reductase | VF |
| HF562_RS24160 () | 129084..130826 | - | 1743 | WP_001015721.1 | hypothetical protein | VF |
| HF562_RS24165 () | 130826..131773 | - | 948 | WP_000011910.1 | hypothetical protein | VF |
| HF562_RS24170 () | 131774..133498 | - | 1725 | WP_000602863.1 | hypothetical protein | VF |
| HF562_RS24175 () | 133634..134827 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| HF562_RS24180 () | 135207..135587 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| HF562_RS24185 () | 135928..136341 | - | 414 | Protein_150 | phosphopyruvate hydratase | - |
| HF562_RS24190 () | 136339..136596 | + | 258 | Protein_151 | Tn3 family transposase | - |
| HF562_RS24195 () | 136830..137687 | - | 858 | WP_000968139.1 | hypothetical protein | ARG |
| HF562_RS24200 () | 137684..138541 | - | 858 | WP_001101723.1 | hypothetical protein | ARG |
| HF562_RS24205 () | 138538..139365 | - | 828 | WP_000983710.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HF562_RS24210 () | 139365..140279 | - | 915 | WP_000949004.1 | hypothetical protein | VF |
| HF562_RS24215 () | 140635..141332 | + | 698 | Protein_156 | IS1 family transposase | - |
| HF562_RS24220 () | 141512..142025 | - | 514 | Protein_157 | DUF4113 domain-containing protein | - |
| HF562_RS24975 () | 142086..142190 | - | 105 | Protein_158 | AAA family ATPase | - |
| HF562_RS24225 () | 142192..142515 | - | 324 | Protein_159 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|