MGE detailed information
MGE type: Conjugative plasmid MGE length: 107230 bp
Accession: NZ_CP051220 Location: 1..107230 Organism: Escherichia coli strain SFE8 Replicon: plasmid pSCZP1
Accession: NZ_CP051220 Location: 1..107230 Organism: Escherichia coli strain SFE8 Replicon: plasmid pSCZP1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF527_RS24455 () | 1..858 | + | 858 | WP_072834368.1 | incFII family plasmid replication initiator RepA | - |
| HF527_RS24460 () | 1559..1750 | + | 192 | WP_072656942.1 | hypothetical protein | - |
| HF527_RS24465 () | 1823..2074 | + | 252 | WP_106693621.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HF527_RS24470 () | 2071..2358 | + | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HF527_RS24475 () | 2528..2932 | + | 405 | WP_000154256.1 | DUF2251 domain-containing protein | - |
| HF527_RS24480 () | 3087..3467 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| HF527_RS24485 () | 3464..3811 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| HF527_RS24490 () | 3861..5399 | + | 1539 | WP_106693623.1 | IS66 family transposase ISEc8 | Transposase |
| HF527_RS24495 () | 5511..5846 | - | 336 | WP_021531026.1 | immunity protein | - |
| HF527_RS24500 () | 5975..6322 | + | 348 | WP_106693625.1 | hypothetical protein | - |
| HF527_RS24505 () | 6340..6930 | - | 591 | WP_106693627.1 | hypothetical protein | - |
| HF527_RS24510 () | 6927..7166 | - | 240 | WP_168725371.1 | hypothetical protein | - |
| HF527_RS24515 () | 7177..8405 | + | 1229 | WP_102384962.1 | IS3 family transposase IS2 | Transposase |
| HF527_RS24520 () | 8851..9303 | + | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| HF527_RS24525 () | 9413..9868 | - | 456 | WP_136669667.1 | IS200/IS605 family transposase | - |
| HF527_RS24530 () | 10086..10568 | - | 483 | WP_168725372.1 | hypothetical protein | - |
| HF527_RS24535 () | 11061..11483 | - | 423 | WP_045133246.1 | Protein AggB | VF |
| HF527_RS24540 () | 11500..12657 | - | 1158 | WP_168725373.1 | F1 capsule-anchoring protein | VF |
| HF527_RS24545 () | 12707..13680 | + | 974 | Protein_18 | IS3 family transposase IS3 | Transposase |
| HF527_RS24550 () | 13711..15324 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| HF527_RS24555 () | 15355..15705 | - | 351 | WP_000624677.1 | IS66 family transposase IS682 | Transposase |
| HF527_RS24560 () | 15702..16121 | - | 420 | WP_000422696.1 | IS66 family transposase ISEc23 | Transposase |
| HF527_RS24565 () | 16209..16403 | + | 195 | Protein_22 | integrase core domain-containing protein | - |
| HF527_RS24570 () | 16611..20108 | - | 3498 | WP_168725374.1 | Outer membrane protein IcsA autotransporter | VF |
| HF527_RS24575 () | 20373..21600 | - | 1228 | Protein_24 | IS3 family transposase IS2 | Transposase |
| HF527_RS24580 () | 21852..22241 | - | 390 | WP_168725375.1 | cytochrome B562 | - |
| HF527_RS24585 () | 22675..23565 | - | 891 | WP_000470711.1 | putative HTH-type transcriptional regulator YahB | VF |
| HF527_RS24590 () | 23643..24866 | - | 1224 | WP_024188138.1 | cytosine permease | - |
| HF527_RS24595 () | 24889..25278 | - | 390 | WP_001696803.1 | hypothetical protein | - |
| HF527_RS24600 () | 25295..26251 | - | 957 | WP_062894335.1 | carbamate kinase | - |
| HF527_RS24605 () | 26244..27668 | - | 1425 | WP_053287902.1 | DUF1116 domain-containing protein | - |
| HF527_RS24610 () | 27665..29224 | - | 1560 | WP_000865634.1 | acyl-CoA synthetase FdrA | - |
| HF527_RS24615 () | 29319..30179 | - | 861 | WP_001442105.1 | DUF2877 domain-containing protein | - |
| HF527_RS24620 () | 30185..30853 | - | 669 | WP_000155780.1 | cysteine hydrolase | - |
| HF527_RS24625 () | 31312..31743 | - | 432 | Protein_34 | relaxase NikB | - |
| HF527_RS24630 () | 31850..33011 | + | 1162 | Protein_35 | IS3 family transposase IS629 | Transposase |
| HF527_RS25475 () | 33129..34099 | - | 971 | Protein_36 | plasmid segregation protein parM | - |
| HF527_RS24645 () | 34328..34972 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| HF527_RS24650 () | 34966..35241 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HF527_RS24655 () | 35378..36187 | - | 810 | WP_113452213.1 | site-specific integrase | - |
| HF527_RS24660 () | 36188..36493 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HF527_RS24665 () | 36495..36713 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HF527_RS24670 () | 37271..41092 | - | 3822 | WP_106693592.1 | hypothetical protein | - |
| HF527_RS24675 () | 41336..41497 | + | 162 | WP_000251882.1 | hypothetical protein | - |
| HF527_RS24680 () | 41515..41862 | - | 348 | WP_106693595.1 | hypothetical protein | - |
| HF527_RS24685 () | 42556..42687 | + | 132 | Protein_45 | lipid II-degrading bacteriocin | - |
| HF527_RS24690 () | 42752..43105 | - | 354 | WP_000864815.1 | colicin M immunity protein | - |
| HF527_RS24695 () | 43278..43934 | - | 657 | WP_166494957.1 | site-specific integrase | - |
| HF527_RS24700 () | 44887..45096 | + | 210 | WP_000929752.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HF527_RS24705 () | 45285..46040 | + | 756 | WP_024198451.1 | Chaperone protein caf1M | VF |
| HF527_RS24710 () | 46195..48726 | + | 2532 | WP_136669669.1 | F1 capsule-anchoring protein | VF |
| HF527_RS24715 () | 48743..49165 | + | 423 | WP_045133246.1 | Protein AggB | VF |
| HF527_RS24720 () | 49658..50140 | + | 483 | WP_168725377.1 | hypothetical protein | - |
| HF527_RS24725 () | 50587..50802 | - | 216 | Protein_53 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HF527_RS24730 () | 50868..51650 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| HF527_RS24735 () | 51647..52669 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| HF527_RS24740 () | 52756..52986 | - | 231 | Protein_56 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HF527_RS24745 () | 53081..54309 | + | 1229 | WP_102384962.1 | IS3 family transposase IS2 | Transposase |
| HF527_RS24750 () | 54376..54885 | + | 510 | WP_001401714.1 | hypothetical protein | - |
| HF527_RS24755 () | 55036..55386 | - | 351 | WP_000361384.1 | plasmid partitioning/stability family protein | - |
| HF527_RS24760 () | 55389..56351 | - | 963 | WP_168725378.1 | plasmid segregation protein ParM | - |
| HF527_RS24765 () | 56504..56790 | + | 287 | Protein_61 | hypothetical protein | - |
| HF527_RS24770 () | 56867..57550 | + | 684 | WP_000085890.1 | DNA methylase | - |
| HF527_RS24775 () | 57551..57772 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| HF527_RS24780 () | 57786..58220 | + | 435 | WP_000274455.1 | DUF1380 family protein | - |
| HF527_RS24785 () | 58271..59047 | + | 777 | WP_168725379.1 | hypothetical protein | - |
| HF527_RS25480 () | 59586..59888 | + | 303 | WP_072128676.1 | antirestriction protein | - |
| HF527_RS24795 () | 59935..60370 | + | 436 | Protein_67 | DUF1380 family protein | - |
| HF527_RS24800 () | 60367..60558 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HF527_RS24805 () | 61634..61864 | + | 231 | WP_168725380.1 | hypothetical protein | - |
| HF527_RS24810 () | 61916..63277 | + | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| HF527_RS24815 () | 63325..63888 | + | 564 | WP_001377760.1 | class I SAM-dependent methyltransferase | - |
| HF527_RS25485 () | 64568..64774 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| HF527_RS24825 () | 64800..65339 | + | 540 | WP_000290813.1 | single-stranded DNA-binding protein | - |
| HF527_RS24830 () | 65402..65635 | + | 234 | WP_000006030.1 | DUF905 family protein | - |
| HF527_RS24835 () | 65700..67658 | + | 1959 | WP_168725381.1 | ParB/RepB/Spo0J family partition protein | - |
| HF527_RS24840 () | 67713..68147 | + | 435 | WP_032217500.1 | conjugation system SOS inhibitor PsiB | - |
| HF527_RS24845 () | 68144..68904 | + | 761 | Protein_77 | plasmid SOS inhibition protein A | - |
| HF527_RS24850 () | 68873..69061 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 68873..69097 | + | 225 | NuclAT_0 | - | - |
| - () | 68873..69097 | + | 225 | NuclAT_0 | - | - |
| - () | 68873..69097 | + | 225 | NuclAT_0 | - | - |
| - () | 68873..69097 | + | 225 | NuclAT_0 | - | - |
| HF527_RS24855 () | 69141..69299 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HF527_RS24865 () | 70221..70508 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| HF527_RS24870 () | 70627..71448 | + | 822 | WP_001736720.1 | DUF945 domain-containing protein | - |
| HF527_RS24875 () | 71745..72347 | - | 603 | WP_168725382.1 | hypothetical protein | VF |
| HF527_RS24880 () | 72669..73052 | + | 384 | WP_096979339.1 | relaxosome protein TraM | - |
| HF527_RS24885 () | 73242..73928 | + | 687 | WP_106693513.1 | PAS domain-containing protein | - |
| HF527_RS24890 () | 74022..74249 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| HF527_RS24895 () | 74283..74648 | + | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| HF527_RS24900 () | 74663..74974 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HF527_RS24905 () | 74996..75562 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HF527_RS24910 () | 75573..76277 | + | 705 | WP_149001116.1 | type-F conjugative transfer system secretin TraK | - |
| HF527_RS24915 () | 76277..77704 | + | 1428 | WP_053879286.1 | conjugal transfer protein TraB | - |
| HF527_RS24920 () | 77694..78284 | + | 591 | WP_097733829.1 | conjugal transfer protein TraP | - |
| HF527_RS24925 () | 78238..78591 | + | 354 | WP_106693518.1 | conjugal transfer protein TrbD | - |
| HF527_RS24930 () | 78584..78835 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HF527_RS24935 () | 78832..79347 | + | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HF527_RS24940 () | 79482..79703 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HF527_RS24945 () | 79863..82490 | + | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| HF527_RS24950 () | 82487..82873 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| HF527_RS24955 () | 82870..83502 | + | 633 | WP_106693522.1 | type-F conjugative transfer system protein TraW | - |
| HF527_RS24960 () | 83499..84491 | + | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| HF527_RS24965 () | 84500..85138 | + | 639 | WP_106693527.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HF527_RS24970 () | 85135..86985 | + | 1851 | WP_106693531.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HF527_RS24975 () | 87012..87269 | + | 258 | WP_000864314.1 | conjugal transfer protein TrbE | - |
| HF527_RS24980 () | 87262..88005 | + | 744 | WP_153059940.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HF527_RS24985 () | 88019..88360 | + | 342 | WP_106693539.1 | conjugal transfer protein TrbA | - |
| HF527_RS24990 () | 88341..88676 | - | 336 | WP_106693543.1 | toxin ArtA | - |
| HF527_RS24995 () | 88757..89041 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HF527_RS25000 () | 89028..89573 | + | 546 | WP_032215016.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HF527_RS25005 () | 89503..89844 | + | 342 | WP_153059941.1 | P-type conjugative transfer protein TrbJ | - |
| HF527_RS25010 () | 89798..90223 | + | 426 | WP_106693552.1 | F-type conjugal transfer protein TrbF | - |
| HF527_RS25015 () | 90210..91583 | + | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| HF527_RS25020 () | 91580..94405 | + | 2826 | WP_168725383.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HF527_RS25025 () | 94402..94911 | + | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| HF527_RS25030 () | 94925..95656 | + | 732 | WP_024187508.1 | complement resistance protein TraT | - |
| HF527_RS25035 () | 95909..98062 | + | 2154 | WP_168725384.1 | type IV conjugative transfer system coupling protein TraD | - |
| HF527_RS25040 () | 98062..103332 | + | 5271 | WP_168725385.1 | Multifunctional conjugation protein TraI | Relaxase |
| HF527_RS25045 () | 103352..104098 | + | 747 | WP_021534916.1 | conjugal transfer pilus acetylase TraX | - |
| HF527_RS25050 () | 104153..104713 | + | 561 | WP_106693617.1 | fertility inhibition protein FinO | - |
| HF527_RS25055 () | 104844..105056 | + | 213 | WP_001311693.1 | hypothetical protein | - |
| HF527_RS25490 () | 105262..105348 | + | 87 | Protein_119 | endonuclease | - |
| HF527_RS25060 () | 105529..105840 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - () | 106136..106197 | - | 62 | NuclAT_1 | - | - |
| - () | 106136..106197 | - | 62 | NuclAT_1 | - | - |
| - () | 106136..106197 | - | 62 | NuclAT_1 | - | - |
| - () | 106136..106197 | - | 62 | NuclAT_1 | - | - |
| HF527_RS25065 () | 106184..106390 | + | 207 | WP_181654380.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HF527_RS25070 () | 106674..106931 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HF527_RS25075 () | 107165..107230 | + | 66 | Protein_123 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|