MGE detailed information
MGE type: Genomic_island MGE length: 161438 bp
Accession: NZ_CP048605 Location: 1975070..2136507 Organism: Escherichia coli strain PapRG-06-5 Replicon: chromosome
Accession: NZ_CP048605 Location: 1975070..2136507 Organism: Escherichia coli strain PapRG-06-5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M73_RS09270 () | 1970210..1971682 | + | 1473 | WP_163425167.1 | betaine-aldehyde dehydrogenase | - |
| G3M73_RS09275 () | 1971696..1973366 | + | 1671 | WP_163425168.1 | choline dehydrogenase | - |
| G3M73_RS09280 () | 1974448..1975011 | + | 564 | WP_001362381.1 | tyrosine-type DNA invertase IpbA | - |
| G3M73_RS09285 () | 1975070..1975864 | + | 795 | WP_163425169.1 | LuxR family transcriptional regulator HyxR | - |
| G3M73_RS09290 () | 1976018..1976779 | + | 762 | WP_073801883.1 | protein HyxA | - |
| G3M73_RS09295 () | 1976821..1977903 | + | 1083 | Protein_1829 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| G3M73_RS09300 () | 1977925..1979118 | + | 1194 | WP_163425563.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| G3M73_RS09305 () | 1979300..1979968 | + | 669 | WP_163425170.1 | hypothetical protein | - |
| G3M73_RS09310 () | 1980209..1980904 | - | 696 | WP_000370403.1 | lactate utilization protein C | - |
| G3M73_RS09315 () | 1980897..1982324 | - | 1428 | WP_000023919.1 | iron-sulfur cluster-binding protein | - |
| G3M73_RS09320 () | 1982335..1983054 | - | 720 | WP_001102115.1 | (Fe-S)-binding protein | - |
| G3M73_RS09325 () | 1983582..1984436 | - | 855 | WP_163425171.1 | DNA-binding transcriptional regulator RclR | - |
| G3M73_RS09330 () | 1984662..1985987 | + | 1326 | WP_163425172.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| G3M73_RS09335 () | 1986096..1986332 | + | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| G3M73_RS09340 () | 1986344..1986937 | + | 594 | WP_001306921.1 | reactive chlorine species resistance protein RclC | - |
| G3M73_RS09345 () | 1987097..1987966 | - | 870 | WP_033814815.1 | aldo/keto reductase | - |
| G3M73_RS09350 () | 1988215..1989066 | + | 852 | WP_163425173.1 | Right origin-binding protein | VF |
| G3M73_RS09355 () | 1989187..1993440 | - | 4254 | WP_163425174.1 | Invasin | VF |
| G3M73_RS09360 () | 1994005..1994856 | + | 852 | WP_001174462.1 | aldo/keto reductase | - |
| G3M73_RS09365 () | 1994883..1995872 | + | 990 | WP_001172290.1 | aldo/keto reductase | - |
| G3M73_RS09370 () | 1995904..1996797 | - | 894 | WP_001612438.1 | HTH-type transcriptional regulator PgrR | VF |
| G3M73_RS09375 () | 1996998..1997924 | - | 927 | WP_042100293.1 | HTH-type transcriptional regulator PgrR | VF |
| G3M73_RS09380 () | 1998081..1999001 | + | 921 | WP_163425175.1 | alpha/beta hydrolase | - |
| G3M73_RS09385 () | 1999237..2000379 | + | 1143 | WP_000182352.1 | NADH-dependent flavin oxidoreductase | - |
| G3M73_RS09390 () | 2000853..2000954 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| G3M73_RS09395 () | 2001318..2001581 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| G3M73_RS09400 () | 2001581..2001721 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| G3M73_RS09405 () | 2001756..2001983 | - | 228 | WP_088376536.1 | hypothetical protein | - |
| G3M73_RS09410 () | 2002806..2003348 | + | 543 | WP_001296902.1 | HTH-type transcriptional regulator EcpR | VF |
| G3M73_RS09415 () | 2003423..2004010 | + | 588 | WP_000730972.1 | Common pilus major fimbrillin subunit EcpA | VF |
| G3M73_RS09420 () | 2004068..2004736 | + | 669 | WP_088376534.1 | putative fimbrial chaperone EcpB | VF |
| G3M73_RS09425 () | 2004762..2007287 | + | 2526 | WP_096253431.1 | putative outer membrane usher protein EcpC | VF |
| G3M73_RS09430 () | 2007277..2008920 | + | 1644 | WP_069913655.1 | Fimbria adhesin EcpD | VF |
| G3M73_RS09435 () | 2008889..2009599 | + | 711 | WP_033815317.1 | putative fimbrial chaperone EcpE | VF |
| G3M73_RS09440 () | 2009912..2010241 | + | 330 | WP_001307600.1 | YkgJ family cysteine cluster protein | - |
| G3M73_RS09445 () | 2010488..2011102 | - | 615 | WP_001019920.1 | YagU family protein | - |
| G3M73_RS09450 () | 2011149..2011397 | - | 249 | WP_000074141.1 | hypothetical protein | - |
| G3M73_RS09455 () | 2011520..2012209 | + | 690 | WP_000070679.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| G3M73_RS09460 () | 2012206..2013162 | + | 957 | WP_000643332.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| G3M73_RS09465 () | 2013159..2015357 | + | 2199 | WP_163425176.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| G3M73_RS09470 () | 2015367..2016323 | + | 957 | WP_158115317.1 | molybdenum cofactor insertion chaperone PaoD | - |
| G3M73_RS09475 () | 2016502..2017629 | - | 1128 | WP_163425564.1 | MFS transporter | - |
| G3M73_RS09480 () | 2017771..2018829 | - | 1059 | WP_122987247.1 | alpha/beta hydrolase | - |
| G3M73_RS09485 () | 2019075..2019977 | + | 903 | WP_163425177.1 | HTH-type transcriptional regulator PgrR | VF |
| G3M73_RS09490 () | 2020184..2020276 | + | 93 | Protein_1868 | hypothetical protein | - |
| G3M73_RS09495 () | 2020679..2020957 | - | 279 | WP_123178126.1 | hypothetical protein | - |
| G3M73_RS09500 () | 2021123..2021845 | - | 723 | WP_163425178.1 | putative oxidoreductase | VF |
| G3M73_RS09505 () | 2021944..2022843 | + | 900 | WP_001717719.1 | HTH-type transcriptional regulator PgrR | VF |
| G3M73_RS09515 () | 2023161..2024414 | - | 1254 | WP_163425179.1 | glutamate-5-semialdehyde dehydrogenase | - |
| G3M73_RS09520 () | 2024426..2025529 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| G3M73_RS09525 () | 2025817..2026872 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| G3M73_RS09530 () | 2026911..2027312 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| G3M73_RS09535 () | 2027370..2028614 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 2028030..2028110 | - | 81 | NuclAT_12 | - | - |
| - () | 2028030..2028110 | - | 81 | NuclAT_12 | - | - |
| - () | 2028030..2028110 | - | 81 | NuclAT_12 | - | - |
| - () | 2028030..2028110 | - | 81 | NuclAT_12 | - | - |
| G3M73_RS09540 () | 2028706..2029164 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| G3M73_RS09545 () | 2029425..2030882 | + | 1458 | WP_032187154.1 | cytosol nonspecific dipeptidase | - |
| G3M73_RS09550 () | 2030939..2031247 | - | 309 | Protein_1879 | peptide chain release factor H | - |
| G3M73_RS09555 () | 2031267..2031475 | - | 209 | Protein_1880 | RtcB family protein | - |
| G3M73_RS09560 () | 2031793..2032245 | - | 453 | WP_001059871.1 | GNAT family N-acetyltransferase | - |
| G3M73_RS09565 () | 2032255..2032653 | - | 399 | WP_032280310.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| G3M73_RS09570 () | 2032656..2032949 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| G3M73_RS09575 () | 2033001..2034056 | - | 1056 | WP_001226183.1 | DNA polymerase IV | - |
| G3M73_RS09580 () | 2034127..2034912 | - | 786 | WP_163425180.1 | Chemotaxis protein LafU | VF |
| G3M73_RS09585 () | 2034884..2036596 | + | 1713 | Protein_1886 | Flagellar biosynthesis protein FlhA | VF |
| G3M73_RS09590 () | 2036789..2037286 | - | 498 | WP_163425181.1 | transposase | - |
| G3M73_RS09595 () | 2037462..2038211 | - | 750 | WP_024191992.1 | Murein DD-endopeptidase MepH | VF |
| G3M73_RS09600 () | 2038421..2038681 | + | 261 | WP_000729709.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| G3M73_RS09605 () | 2038684..2038962 | + | 279 | WP_000615980.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| G3M73_RS09610 () | 2039118..2039858 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| G3M73_RS09615 () | 2039829..2040596 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| G3M73_RS09620 () | 2040802..2041380 | - | 579 | WP_163425182.1 | Phosphoheptose isomerase | VF |
| G3M73_RS09625 () | 2041620..2044064 | + | 2445 | WP_000973082.1 | Acyl-coenzyme A dehydrogenase | VF |
| G3M73_RS09630 () | 2044107..2044553 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| G3M73_RS09635 () | 2044734..2045504 | + | 771 | WP_033802989.1 | 2-oxoglutaramate amidase | - |
| G3M73_RS09640 () | 2045544..2046680 | - | 1137 | WP_032225710.1 | ISAs1 family transposase ISEc1 | Transposase |
| G3M73_RS09645 () | 2046825..2047307 | - | 483 | Protein_1898 | Putative deoxyribonuclease RhsC | VF |
| G3M73_RS09650 () | 2047301..2047414 | - | 114 | Protein_1899 | RHS domain-containing protein | - |
| G3M73_RS09655 () | 2047549..2047857 | - | 309 | WP_089558415.1 | hypothetical protein | - |
| G3M73_RS09660 () | 2048208..2049623 | - | 1416 | Protein_1901 | Putative deoxyribonuclease RhsC | VF |
| G3M73_RS09665 () | 2049622..2049777 | + | 156 | WP_163425183.1 | SymE family type I addiction module toxin | - |
| G3M73_RS09670 () | 2049884..2050327 | - | 444 | WP_047670951.1 | SMI1/KNR4 family protein | - |
| G3M73_RS09675 () | 2050324..2052927 | - | 2604 | Protein_1904 | RHS domain-containing protein | - |
| G3M73_RS09680 () | 2053272..2053736 | + | 465 | WP_163425184.1 | hypothetical protein | - |
| G3M73_RS09685 () | 2053826..2054446 | - | 621 | WP_163425185.1 | hypothetical protein | - |
| G3M73_RS09690 () | 2054819..2058571 | - | 3753 | Protein_1907 | PAAR domain-containing protein | - |
| G3M73_RS09695 () | 2058593..2059036 | - | 444 | WP_000203114.1 | DcrB-related protein | - |
| G3M73_RS09700 () | 2059060..2061273 | - | 2214 | WP_163425186.1 | Actin cross-linking toxin VgrG1 | VF |
| G3M73_RS09705 () | 2061299..2061685 | - | 387 | WP_089621605.1 | hypothetical protein | - |
| G3M73_RS09710 () | 2061682..2062383 | - | 702 | WP_204262371.1 | hypothetical protein | - |
| G3M73_RS09715 () | 2062569..2063372 | - | 804 | Protein_1912 | hypothetical protein | VF |
| G3M73_RS09720 () | 2063397..2063768 | - | 372 | WP_089558414.1 | hypothetical protein | - |
| G3M73_RS09725 () | 2063765..2064499 | - | 735 | WP_097315889.1 | hypothetical protein | - |
| G3M73_RS09730 () | 2064692..2064811 | - | 120 | Protein_1915 | cytoplasmic protein | - |
| G3M73_RS09735 () | 2064830..2065303 | - | 474 | WP_089522469.1 | hypothetical protein | - |
| G3M73_RS09740 () | 2065288..2065758 | - | 471 | WP_089522471.1 | glucosaminidase domain-containing protein | - |
| G3M73_RS09745 () | 2065786..2066556 | - | 771 | WP_163425566.1 | DUF2094 domain-containing protein | - |
| G3M73_RS09750 () | 2066556..2070422 | - | 3867 | WP_163425187.1 | hypothetical protein | VF |
| G3M73_RS09755 () | 2070422..2070667 | - | 246 | WP_077782713.1 | hypothetical protein | - |
| G3M73_RS09760 () | 2070718..2071392 | - | 675 | WP_112912441.1 | hypothetical protein | - |
| G3M73_RS09765 () | 2071398..2072714 | - | 1317 | WP_163425188.1 | putative lipoprotein YiaD | VF |
| G3M73_RS09770 () | 2072711..2074054 | - | 1344 | WP_047670859.1 | hypothetical protein | VF |
| G3M73_RS09775 () | 2074058..2074591 | - | 534 | WP_089522479.1 | hypothetical protein | VF |
| G3M73_RS09780 () | 2074659..2075144 | - | 486 | WP_000119441.1 | Protein hcp1 | VF |
| G3M73_RS09785 () | 2075258..2075629 | - | 372 | WP_163425189.1 | hypothetical protein | - |
| G3M73_RS09790 () | 2075626..2076111 | - | 486 | WP_000533466.1 | type VI secretion system amidase effector protein Tae4 | - |
| G3M73_RS09795 () | 2076164..2077678 | - | 1515 | WP_163425190.1 | hypothetical protein | VF |
| G3M73_RS09800 () | 2077703..2078248 | - | 546 | WP_000996814.1 | hypothetical protein | VF |
| G3M73_RS09805 () | 2078310..2078600 | - | 291 | WP_000144225.1 | hypothetical protein | - |
| G3M73_RS09810 () | 2078603..2079166 | - | 564 | WP_163425191.1 | peptidoglycan-binding domain-containing protein | - |
| G3M73_RS09815 () | 2079179..2081812 | - | 2634 | WP_001542643.1 | Protein ClpV1 | VF |
| G3M73_RS09820 () | 2082145..2083059 | + | 915 | WP_045178071.1 | type VI secretion system-associated protein TagK | - |
| G3M73_RS09825 () | 2083046..2083876 | + | 831 | WP_045178072.1 | hypothetical protein | VF |
| G3M73_RS09830 () | 2083873..2084367 | + | 495 | WP_163425192.1 | hypothetical protein | VF |
| G3M73_RS09835 () | 2084383..2086266 | + | 1884 | WP_097488633.1 | type VI secretion system baseplate subunit TssF | - |
| G3M73_RS09840 () | 2086263..2087258 | + | 996 | WP_089522221.1 | hypothetical protein | VF |
| G3M73_RS09845 () | 2087269..2088315 | + | 1047 | WP_137567009.1 | hypothetical protein | VF |
| G3M73_RS09850 () | 2088636..2089844 | + | 1209 | WP_163425193.1 | Prophage integrase IntA ; Integrase | Integrase |
| G3M73_RS09855 () | 2089909..2090382 | + | 474 | WP_163425194.1 | hypothetical protein | - |
| G3M73_RS09860 () | 2090434..2091132 | - | 699 | WP_163425195.1 | inovirus Gp2 family protein | - |
| G3M73_RS09865 () | 2091488..2093011 | - | 1524 | WP_163425196.1 | DUF3987 domain-containing protein | - |
| G3M73_RS09870 () | 2093036..2093260 | - | 225 | WP_001614372.1 | AlpA family phage regulatory protein | - |
| G3M73_RS09875 () | 2093364..2095208 | + | 1845 | WP_163425197.1 | hypothetical protein | - |
| G3M73_RS09880 () | 2096052..2097023 | + | 972 | Protein_1945 | EAL domain-containing protein | - |
| G3M73_RS09890 () | 2097095..2098257 | + | 1163 | WP_112909929.1 | IS3 family transposase ISEc17 | Transposase |
| G3M73_RS09895 () | 2098676..2099152 | - | 477 | WP_163425198.1 | hypothetical protein | - |
| G3M73_RS09900 () | 2099149..2099859 | - | 711 | WP_163425199.1 | hypothetical protein | - |
| G3M73_RS09905 () | 2100159..2101192 | - | 1034 | Protein_1949 | IS630 family transposase IS630 | Transposase |
| G3M73_RS09910 () | 2101792..2102064 | - | 273 | WP_163425201.1 | hypothetical protein | - |
| G3M73_RS09915 () | 2102142..2103083 | - | 942 | WP_163425202.1 | Fimbria adhesin protein | VF |
| G3M73_RS09920 () | 2103160..2105700 | - | 2541 | WP_163425203.1 | Outer membrane usher protein FimD | VF |
| G3M73_RS09925 () | 2105707..2106387 | - | 681 | WP_163425204.1 | putative fimbrial chaperone LpfB | VF |
| G3M73_RS09930 () | 2106477..2107016 | - | 540 | WP_163425205.1 | putative major fimbrial subunit LpfA | VF |
| G3M73_RS09940 () | 2107611..2108773 | + | 1163 | WP_204262372.1 | IS3 family transposase ISEc17 | Transposase |
| G3M73_RS09945 () | 2108807..2108908 | + | 102 | Protein_1956 | SAM-dependent methyltransferase | - |
| G3M73_RS09950 () | 2108978..2109553 | - | 576 | WP_163425206.1 | hypothetical protein | - |
| G3M73_RS09955 () | 2109730..2110086 | - | 357 | WP_163425207.1 | DUF4156 domain-containing protein | - |
| G3M73_RS09960 () | 2110148..2110687 | - | 540 | WP_163425208.1 | Attachment invasion locus protein | VF |
| G3M73_RS09965 () | 2110974..2111462 | - | 489 | WP_163425209.1 | hypothetical protein | - |
| G3M73_RS09970 () | 2111435..2112175 | - | 741 | WP_163425210.1 | hypothetical protein | VF |
| G3M73_RS09975 () | 2112374..2112880 | - | 507 | WP_163425211.1 | hypothetical protein | - |
| G3M73_RS09980 () | 2112853..2113602 | - | 750 | WP_163425212.1 | hypothetical protein | VF |
| G3M73_RS09985 () | 2114016..2118227 | + | 4212 | WP_163425213.1 | Outer membrane protein IcsA autotransporter | VF |
| G3M73_RS09990 () | 2118782..2120329 | + | 1548 | WP_163425214.1 | putative cyclic di-GMP phosphodiesterase PdeN | VF |
| G3M73_RS09995 () | 2120736..2120975 | + | 240 | Protein_1966 | transposase | - |
| G3M73_RS10000 () | 2121214..2122554 | + | 1341 | Protein_1967 | IS110 family transposase ISWpi13 | Transposase |
| G3M73_RS10005 () | 2122589..2122783 | + | 195 | Protein_1968 | IS3 family transposase ISLad1 | Transposase |
| G3M73_RS10010 () | 2122881..2123456 | + | 576 | WP_163425215.1 | hypothetical protein | - |
| G3M73_RS10015 () | 2123681..2124556 | + | 876 | WP_163425216.1 | GTPase family protein | - |
| G3M73_RS10020 () | 2124817..2125530 | + | 714 | WP_163425217.1 | WYL domain-containing protein | - |
| G3M73_RS10025 () | 2125527..2126162 | + | 636 | WP_000772020.1 | hypothetical protein | - |
| G3M73_RS10030 () | 2126198..2126650 | + | 453 | WP_163425218.1 | hypothetical protein | - |
| G3M73_RS10035 () | 2126647..2127099 | + | 453 | WP_163425219.1 | hypothetical protein | - |
| G3M73_RS10040 () | 2127162..2127704 | + | 543 | WP_001104018.1 | DUF4339 domain-containing protein | - |
| G3M73_RS10045 () | 2127764..2128216 | + | 453 | WP_020837115.1 | hypothetical protein | - |
| G3M73_RS10050 () | 2128293..2128526 | + | 234 | WP_001114682.1 | DUF905 domain-containing protein | - |
| G3M73_RS10055 () | 2128646..2129464 | + | 819 | WP_001234406.1 | DUF945 domain-containing protein | - |
| G3M73_RS10060 () | 2129732..2130202 | + | 471 | WP_163425220.1 | antirestriction protein | - |
| G3M73_RS10065 () | 2130214..2130693 | + | 480 | WP_000437750.1 | DNA repair protein RadC | - |
| G3M73_RS10070 () | 2130714..2130935 | + | 222 | WP_000691981.1 | DUF987 domain-containing protein | - |
| G3M73_RS10075 () | 2130959..2131318 | + | 360 | WP_163425221.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| G3M73_RS10080 () | 2131369..2131746 | + | 378 | WP_001194695.1 | TA system toxin CbtA family protein | Toxin Detail |
| G3M73_RS10085 () | 2131743..2132234 | + | 492 | WP_000777682.1 | hypothetical protein | - |
| G3M73_RS10090 () | 2132266..2132469 | + | 204 | WP_000413747.1 | DUF957 domain-containing protein | - |
| G3M73_RS10095 () | 2132550..2133394 | + | 845 | Protein_1986 | DUF4942 domain-containing protein | - |
| G3M73_RS10105 () | 2133736..2134467 | - | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| G3M73_RS10110 () | 2134532..2134999 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| G3M73_RS10115 () | 2134996..2135718 | - | 723 | WP_001307587.1 | class I SAM-dependent methyltransferase | - |
| G3M73_RS10120 () | 2135752..2136507 | + | 756 | WP_137427674.1 | hydroxyacylglutathione hydrolase | - |
| G3M73_RS10125 () | 2136579..2137937 | + | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| G3M73_RS10130 () | 2137985..2138755 | - | 771 | WP_163425222.1 | class I SAM-dependent methyltransferase | - |
| G3M73_RS10135 () | 2138833..2139633 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| G3M73_RS10140 () | 2139874..2140788 | + | 915 | WP_000648556.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|