MGE detailed information
MGE type: Prophage MGE length: 74632 bp
Accession: NZ_CP048439 Location: 3602255..3676886 Organism: Escherichia coli strain NBRC 3301 Replicon: chromosome
Accession: NZ_CP048439 Location: 3602255..3676886 Organism: Escherichia coli strain NBRC 3301 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GXM24_RS17550 () | 3597389..3598345 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| GXM24_RS17555 () | 3598342..3600540 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| GXM24_RS17560 () | 3600550..3601506 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| GXM24_RS17565 () | 3601557..3601895 | + | 339 | Protein_3422 | LysR family transcriptional regulator | - |
| GXM24_RS17570 () | 3602180..3603580 | + | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| GXM24_RS17575 () | 3603697..3604137 | + | 441 | WP_000224818.1 | hypothetical protein | - |
| GXM24_RS17580 () | 3604134..3604358 | + | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| GXM24_RS17585 () | 3604477..3605331 | + | 855 | WP_000072039.1 | hypothetical protein | - |
| GXM24_RS17590 () | 3605358..3606056 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| GXM24_RS17595 () | 3606328..3606954 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| GXM24_RS17600 () | 3607045..3607875 | - | 831 | Protein_3429 | type III restriction endonuclease subunit R | - |
| GXM24_RS17605 () | 3607930..3608627 | + | 698 | Protein_3430 | IS1 family transposase IS1R | Transposase |
| GXM24_RS17610 () | 3608644..3608847 | - | 204 | Protein_3431 | DUF3987 domain-containing protein | - |
| GXM24_RS17615 () | 3608971..3609975 | + | 1005 | WP_001281825.1 | hypothetical protein | VF |
| GXM24_RS17620 () | 3610114..3610872 | + | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| GXM24_RS17625 () | 3610877..3612487 | - | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| GXM24_RS17630 () | 3612499..3613881 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| GXM24_RS17635 () | 3614108..3616075 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| GXM24_RS17640 () | 3616090..3616998 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| GXM24_RS17645 () | 3617293..3618447 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| GXM24_RS17650 () | 3618541..3618891 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| GXM24_RS17655 () | 3618914..3619162 | + | 249 | Protein_3440 | IS3 family transposase ISEhe3 | Transposase |
| GXM24_RS17660 () | 3619172..3619345 | - | 174 | Protein_3441 | IS30 family transposase | - |
| GXM24_RS17665 () | 3619401..3620098 | + | 698 | Protein_3442 | IS1 family transposase IS1R | Transposase |
| GXM24_RS17670 () | 3620115..3620462 | + | 348 | Protein_3443 | ABC transporter permease subunit | - |
| GXM24_RS17675 () | 3620474..3621520 | + | 1047 | WP_000192349.1 | hypothetical protein | VF |
| GXM24_RS17680 () | 3621629..3622561 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| GXM24_RS17685 () | 3622548..3623951 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| GXM24_RS17690 () | 3624159..3625175 | + | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| GXM24_RS17695 () | 3625323..3626414 | - | 1092 | Protein_3448 | group II intron reverse transcriptase/maturase | - |
| GXM24_RS17700 () | 3627087..3627512 | - | 426 | Protein_3449 | IS3 family transposase | - |
| GXM24_RS17705 () | 3627522..3628673 | - | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| GXM24_RS17710 () | 3628741..3628998 | - | 258 | Protein_3451 | IS3 family transposase ISEc52 | Transposase |
| GXM24_RS17715 () | 3629094..3629987 | + | 894 | WP_000770246.1 | LysR family transcriptional regulator | - |
| GXM24_RS17720 () | 3630316..3631179 | + | 864 | WP_001065553.1 | GTPase family protein | - |
| GXM24_RS17725 () | 3631271..3632092 | + | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
| GXM24_RS17730 () | 3632309..3632500 | + | 192 | Protein_3455 | DeoR family transcriptional regulator | - |
| GXM24_RS17735 () | 3632496..3632723 | + | 228 | WP_001548158.1 | hypothetical protein | - |
| GXM24_RS17740 () | 3632723..3633166 | + | 444 | WP_000824223.1 | hypothetical protein | - |
| GXM24_RS17745 () | 3633189..3633656 | + | 468 | WP_001547765.1 | hypothetical protein | - |
| GXM24_RS17750 () | 3633733..3633972 | + | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| GXM24_RS17755 () | 3634070..3634528 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| GXM24_RS17760 () | 3634544..3635020 | + | 477 | WP_000811693.1 | RadC family protein | - |
| GXM24_RS17765 () | 3635029..3635250 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| GXM24_RS17770 () | 3635269..3635586 | + | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| GXM24_RS17775 () | 3635607..3635948 | + | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| GXM24_RS17785 () | 3636520..3637773 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| GXM24_RS17790 () | 3637785..3638888 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| GXM24_RS17795 () | 3639176..3640231 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| GXM24_RS17800 () | 3640270..3640671 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| GXM24_RS17805 () | 3640729..3641973 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 3641389..3641469 | - | 81 | NuclAT_12 | - | - |
| - () | 3641389..3641469 | - | 81 | NuclAT_12 | - | - |
| - () | 3641389..3641469 | - | 81 | NuclAT_12 | - | - |
| - () | 3641389..3641469 | - | 81 | NuclAT_12 | - | - |
| GXM24_RS17810 () | 3642065..3642523 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| GXM24_RS17815 () | 3642784..3644241 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| GXM24_RS17820 () | 3644298..3644819 | - | 522 | Protein_3472 | peptide chain release factor H | - |
| GXM24_RS17825 () | 3644815..3645021 | - | 207 | Protein_3473 | RtcB family protein | - |
| GXM24_RS17830 () | 3645339..3645791 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| GXM24_RS17835 () | 3645801..3646199 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| GXM24_RS17840 () | 3646202..3646495 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| GXM24_RS17845 () | 3646547..3647602 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| GXM24_RS17850 () | 3647673..3648458 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| GXM24_RS17855 () | 3648430..3650142 | + | 1713 | Protein_3479 | hypothetical protein | VF |
| GXM24_RS17860 () | 3650366..3650863 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| GXM24_RS17865 () | 3651039..3651788 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| GXM24_RS17870 () | 3651998..3652258 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| GXM24_RS17875 () | 3652261..3652539 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| GXM24_RS17880 () | 3652695..3653435 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| GXM24_RS17885 () | 3653406..3654173 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| GXM24_RS17890 () | 3654379..3654957 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| GXM24_RS17895 () | 3655197..3657641 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| GXM24_RS17900 () | 3657684..3658130 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| GXM24_RS17905 () | 3658311..3659081 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| GXM24_RS17910 () | 3659122..3659400 | - | 279 | Protein_3490 | ISAs1 family transposase | - |
| GXM24_RS17915 () | 3659398..3659754 | + | 357 | Protein_3491 | hypothetical protein | - |
| GXM24_RS17920 () | 3659764..3660243 | + | 480 | WP_001236645.1 | hypothetical protein | - |
| GXM24_RS17925 () | 3660380..3661165 | - | 786 | WP_001086141.1 | lipoprotein | - |
| GXM24_RS17935 () | 3661702..3662433 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| GXM24_RS17940 () | 3662498..3662965 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| GXM24_RS17945 () | 3662962..3663684 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| GXM24_RS17950 () | 3663718..3664473 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| GXM24_RS17955 () | 3664545..3665903 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| GXM24_RS17960 () | 3665951..3666547 | - | 597 | Protein_3499 | methyltransferase domain-containing protein | - |
| GXM24_RS17965 () | 3666578..3667378 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| GXM24_RS17970 () | 3667619..3668533 | + | 915 | WP_000648572.1 | hypothetical protein | VF |
| GXM24_RS17975 () | 3668530..3669333 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| GXM24_RS18010 () | 3675092..3675667 | - | 576 | WP_001140187.1 | hypothetical protein | VF |
| GXM24_RS18015 () | 3675855..3676886 | + | 1032 | WP_000594006.1 | hypothetical protein | VF |
| GXM24_RS18020 () | 3676879..3677532 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| GXM24_RS18025 () | 3677572..3678387 | + | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| GXM24_RS18030 () | 3678505..3678909 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| GXM24_RS18035 () | 3678906..3679613 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| GXM24_RS18040 () | 3679725..3681443 | + | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|