MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP047546 Location: 879605..890930 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Replicon: chromosome
Accession: NZ_CP047546 Location: 879605..890930 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN28_RS04245 (875051) | 875051..876149 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| DXN28_RS04250 (876159) | 876159..877676 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| DXN28_RS04255 (877752) | 877752..878297 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN28_RS04260 (878562) | 878562..879320 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN28_RS04270 (879605) | 879605..880411 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN28_RS04275 (880686) | 880686..880937 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN28_RS04280 (881114) | 881114..881341 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN28_RS04285 (881341) | 881341..881739 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN28_RS04290 (882545) | 882545..883081 | + | 537 | WP_001038506.1 | 4-hydroxybenzoate octaprenyltransferase | VF |
| DXN28_RS04295 (883128) | 883128..883760 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN28_RS04300 (884479) | 884479..885063 | + | 585 | WP_001244638.1 | HPr kinase/phosphorylase | VF |
| DXN28_RS04305 (885183) | 885183..887672 | + | 2490 | WP_000705483.1 | RNase adapter protein RapZ | VF |
| DXN28_RS04310 (887713) | 887713..888456 | + | 744 | WP_000798504.1 | Ribosome biogenesis GTPase A | VF |
| DXN28_RS04315 (888453) | 888453..889529 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN28_RS04320 (889673) | 889673..890185 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN28_RS04325 (890172) | 890172..890930 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN28_RS04330 (891140) | 891140..891994 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN28_RS04335 (892116) | 892116..892388 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN28_RS04340 (892419) | 892419..893648 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN28_RS04345 (893790) | 893790..894245 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN28_RS04350 (894349) | 894349..895212 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |