MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP047531 Location: 879484..890809 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Replicon: chromosome
Accession: NZ_CP047531 Location: 879484..890809 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN09_RS04245 (874930) | 874930..876028 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| DXN09_RS04250 (876038) | 876038..877555 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| DXN09_RS04255 (877631) | 877631..878176 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN09_RS04260 (878441) | 878441..879199 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN09_RS04270 (879484) | 879484..880290 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN09_RS04275 (880565) | 880565..880816 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN09_RS04280 (880993) | 880993..881220 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN09_RS04285 (881220) | 881220..881618 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN09_RS04290 (882424) | 882424..882960 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| DXN09_RS04295 (883007) | 883007..883639 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN09_RS04300 (884358) | 884358..884942 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| DXN09_RS04305 (885062) | 885062..887551 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| DXN09_RS04310 (887592) | 887592..888335 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| DXN09_RS04315 (888332) | 888332..889408 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN09_RS04320 (889552) | 889552..890064 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN09_RS04325 (890051) | 890051..890809 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN09_RS04330 (891019) | 891019..891873 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN09_RS04335 (891995) | 891995..892267 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN09_RS04340 (892298) | 892298..893527 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN09_RS04345 (893669) | 893669..894124 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN09_RS04350 (894228) | 894228..895091 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |