MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP047529 Location: 4088003..4098583 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Replicon: chromosome
Accession: NZ_CP047529 Location: 4088003..4098583 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN10_RS19990 (4083943) | 4083943..4084398 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN10_RS19995 (4084540) | 4084540..4085769 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN10_RS20000 (4085800) | 4085800..4086072 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN10_RS20005 (4086194) | 4086194..4087048 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN10_RS20010 (4087258) | 4087258..4088016 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN10_RS20015 (4088003) | 4088003..4088515 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN10_RS20020 (4088659) | 4088659..4089735 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN10_RS20025 (4089732) | 4089732..4090475 | - | 744 | WP_000798504.1 | hypothetical protein | VF |
| DXN10_RS20030 (4090516) | 4090516..4093005 | - | 2490 | WP_000705483.1 | hypothetical protein | VF |
| DXN10_RS20035 (4093125) | 4093125..4093709 | - | 585 | WP_001244638.1 | hypothetical protein | VF |
| DXN10_RS20040 (4094428) | 4094428..4095060 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN10_RS20045 (4095107) | 4095107..4095643 | - | 537 | WP_001038506.1 | hypothetical protein | VF |
| DXN10_RS20050 (4096449) | 4096449..4096847 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN10_RS20055 (4096847) | 4096847..4097074 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN10_RS20060 (4097251) | 4097251..4097502 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN10_RS20065 (4097777) | 4097777..4098583 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN10_RS20075 (4098868) | 4098868..4099626 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN10_RS20080 (4099891) | 4099891..4100436 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN10_RS20085 (4100512) | 4100512..4102029 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |