MGE detailed information
MGE type: Conjugative plasmid MGE length: 142890 bp
Accession: NZ_CP047406 Location: 1..142890 Organism: Escherichia coli strain MS6193 Replicon: plasmid pMS6193A-NDM
Accession: NZ_CP047406 Location: 1..142890 Organism: Escherichia coli strain MS6193 Replicon: plasmid pMS6193A-NDM
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS6193_RS23780 () | 408..626 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| MS6193_RS23785 () | 628..933 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| MS6193_RS23790 () | 934..1740 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| MS6193_RS23795 () | 2514..3269 | + | 756 | WP_174190382.1 | replication initiation protein RepE | - |
| MS6193_RS23800 () | 3857..5023 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| MS6193_RS23805 () | 5023..5994 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| MS6193_RS23810 () | 6861..7763 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| MS6193_RS23815 () | 7767..8071 | + | 305 | Protein_7 | hypothetical protein | - |
| MS6193_RS23820 () | 8148..8831 | + | 684 | WP_000086185.1 | DNA methylase | - |
| MS6193_RS23825 () | 8832..9053 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| MS6193_RS23830 () | 9067..9501 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| MS6193_RS23835 () | 9552..10316 | + | 765 | Protein_11 | hypothetical protein | - |
| MS6193_RS23840 () | 10201..10772 | + | 572 | Protein_12 | DUF1472 domain-containing protein | - |
| MS6193_RS23845 () | 10868..11170 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| MS6193_RS23850 () | 11217..11639 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| MS6193_RS23855 () | 11636..11827 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| MS6193_RS23860 () | 12862..13092 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| MS6193_RS23865 () | 13144..14505 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| MS6193_RS23870 () | 14553..15116 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| MS6193_RS23875 () | 15142..15366 | + | 225 | WP_016238251.1 | hypothetical protein | - |
| MS6193_RS23880 () | 16467..17036 | - | 570 | WP_089634947.1 | hypothetical protein | - |
| MS6193_RS23890 () | 18340..19098 | + | 759 | Protein_22 | site-specific integrase | - |
| MS6193_RS23895 () | 19256..20266 | + | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
| MS6193_RS23900 () | 20362..22488 | + | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| MS6193_RS23905 () | 22551..23828 | + | 1278 | WP_001083369.1 | MFS transporter | - |
| MS6193_RS23910 () | 23828..25258 | + | 1431 | WP_000813680.1 | glycoside hydrolase family 32 protein | - |
| MS6193_RS23915 () | 25453..26847 | + | 1395 | WP_001037799.1 | carbohydrate porin | - |
| MS6193_RS23920 () | 27093..27197 | - | 105 | Protein_28 | thiosulfate reductase cytochrome B subunit | - |
| MS6193_RS23925 () | 27254..27947 | + | 694 | Protein_29 | IS1 family transposase IS1A | Transposase |
| MS6193_RS23930 () | 27963..28586 | + | 624 | WP_000912556.1 | potassium channel family protein | - |
| MS6193_RS23935 () | 28671..28922 | + | 252 | Protein_31 | iron-containing alcohol dehydrogenase | - |
| MS6193_RS23940 () | 29211..29528 | - | 318 | Protein_32 | IS110 family transposase | - |
| MS6193_RS23945 () | 29683..29788 | + | 106 | Protein_33 | plasmid SOS inhibition protein A | - |
| - () | 29757..29955 | + | 199 | NuclAT_0 | - | - |
| - () | 29757..29955 | + | 199 | NuclAT_0 | - | - |
| - () | 29757..29955 | + | 199 | NuclAT_0 | - | - |
| - () | 29757..29955 | + | 199 | NuclAT_0 | - | - |
| MS6193_RS23950 () | 30020..30178 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| MS6193_RS23955 () | 30846..31052 | + | 207 | WP_000275854.1 | hypothetical protein | - |
| MS6193_RS23960 () | 31077..31364 | + | 288 | WP_000107242.1 | hypothetical protein | - |
| MS6193_RS23965 () | 31483..32304 | + | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| MS6193_RS23970 () | 32600..33172 | - | 573 | WP_000949660.1 | hypothetical protein | VF |
| MS6193_RS23975 () | 33542..33925 | + | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| MS6193_RS23980 () | 34116..34763 | + | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| MS6193_RS23985 () | 34899..35114 | + | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| MS6193_RS23990 () | 35157..35522 | + | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| MS6193_RS23995 () | 35537..35848 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| MS6193_RS24000 () | 35870..36436 | + | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| MS6193_RS24005 () | 36423..36596 | + | 174 | Protein_45 | traK family protein | - |
| MS6193_RS24010 () | 36597..37007 | + | 411 | Protein_46 | conjugal transfer protein TraP | - |
| MS6193_RS24015 () | 36994..37131 | + | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| MS6193_RS24020 () | 37153..37314 | + | 162 | WP_000741714.1 | conjugal transfer protein TrbD | - |
| MS6193_RS24025 () | 37307..37558 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| MS6193_RS24030 () | 37555..38070 | + | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
| MS6193_RS24035 () | 38205..38426 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| MS6193_RS24040 () | 38586..41213 | + | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
| MS6193_RS24045 () | 41210..41596 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| MS6193_RS24050 () | 41593..42225 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| MS6193_RS24055 () | 42222..42380 | + | 159 | Protein_55 | Multifunctional conjugation protein TraI | Relaxase |
| MS6193_RS24060 () | 43540..44286 | + | 747 | WP_000205701.1 | conjugal transfer pilus acetylase TraX | - |
| MS6193_RS24065 () | 44341..44901 | + | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| MS6193_RS24070 () | 45034..45246 | + | 213 | WP_005012601.1 | hypothetical protein | - |
| MS6193_RS24075 () | 45547..46249 | - | 703 | Protein_59 | IS1 family transposase IS1S | Transposase |
| MS6193_RS24080 () | 46350..46532 | + | 183 | WP_000968309.1 | hypothetical protein | - |
| - () | 46671..46732 | - | 62 | NuclAT_1 | - | - |
| - () | 46671..46732 | - | 62 | NuclAT_1 | - | - |
| - () | 46671..46732 | - | 62 | NuclAT_1 | - | - |
| - () | 46671..46732 | - | 62 | NuclAT_1 | - | - |
| MS6193_RS24085 () | 46719..46925 | + | 207 | WP_015387399.1 | type I toxin-antitoxin system Hok family toxin | - |
| MS6193_RS24090 () | 47209..47466 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| MS6193_RS24095 () | 47702..47776 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| MS6193_RS24100 () | 47769..48215 | + | 447 | Protein_64 | incFII family plasmid replication initiator RepA | - |
| MS6193_RS24105 () | 48161..48643 | - | 483 | Protein_65 | VENN motif pre-toxin domain-containing protein | - |
| MS6193_RS24110 () | 49536..50756 | + | 1221 | WP_000410951.1 | arginine deiminase | - |
| MS6193_RS24115 () | 50767..51678 | + | 912 | WP_000440183.1 | carbamate kinase | - |
| MS6193_RS24120 () | 51763..52767 | + | 1005 | WP_000154544.1 | Ornithine carbamoyltransferase | VF |
| MS6193_RS24125 () | 52815..54218 | + | 1404 | WP_000514417.1 | YfcC family protein | - |
| MS6193_RS24130 () | 54299..54778 | + | 480 | WP_001496175.1 | ArgR family transcriptional regulator | - |
| MS6193_RS24135 () | 54842..55183 | - | 342 | Protein_71 | transposase | - |
| MS6193_RS24140 () | 55135..55356 | - | 222 | WP_000080217.1 | hypothetical protein | - |
| MS6193_RS24145 () | 55387..55737 | - | 351 | WP_000624725.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| MS6193_RS24150 () | 55734..56096 | - | 363 | WP_059330006.1 | IS66 family transposase ISEc23 | Transposase |
| MS6193_RS24155 () | 56205..56898 | - | 694 | Protein_75 | IS1 family transposase IS1A | Transposase |
| MS6193_RS24160 () | 56931..57509 | + | 579 | WP_032147503.1 | DUF2726 domain-containing protein | - |
| MS6193_RS24165 () | 57922..58275 | - | 354 | WP_000005489.1 | hypothetical protein | - |
| MS6193_RS24170 () | 58747..59769 | - | 1023 | WP_000156883.1 | IS110 family transposase ISSm1 | Transposase |
| MS6193_RS24175 () | 60174..60431 | + | 258 | WP_000083821.1 | replication regulatory protein RepA | - |
| MS6193_RS24180 () | 60667..60741 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| MS6193_RS24185 () | 60734..61591 | + | 858 | WP_000130948.1 | incFII family plasmid replication initiator RepA | - |
| MS6193_RS24190 () | 62530..63183 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| MS6193_RS24195 () | 63276..63533 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| MS6193_RS24200 () | 63466..63867 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| MS6193_RS24205 () | 64004..65089 | - | 1086 | Protein_85 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| MS6193_RS24210 () | 65148..65852 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MS6193_RS24215 () | 65996..66550 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| MS6193_RS24220 () | 66681..67511 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| MS6193_RS24225 () | 67649..68089 | + | 441 | Protein_89 | CatB-related O-acetyltransferase | - |
| MS6193_RS24230 () | 68143..68847 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MS6193_RS24235 () | 68954..69814 | + | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| MS6193_RS24240 () | 69827..70369 | + | 543 | WP_002063889.1 | AAA family ATPase | - |
| MS6193_RS24245 () | 70461..70649 | + | 189 | Protein_93 | IS3 family transposase ISKpn11 | Transposase |
| MS6193_RS24250 () | 70703..71407 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| MS6193_RS24255 () | 71572..71865 | + | 294 | Protein_95 | IS30 family transposase | - |
| MS6193_RS24260 () | 71966..72778 | + | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| MS6193_RS24265 () | 72782..73147 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| MS6193_RS24270 () | 73152..73790 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| MS6193_RS24275 () | 73801..74832 | - | 1032 | WP_004201169.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| MS6193_RS24280 () | 75145..76686 | - | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| MS6193_RS24285 () | 77091..77930 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| MS6193_RS24290 () | 77924..78271 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| MS6193_RS24295 () | 78435..79226 | - | 792 | WP_001206356.1 | Streptomycin 3''-adenylyltransferase | ARG |
| MS6193_RS24300 () | 79232..79522 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| MS6193_RS24305 () | 79634..80131 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| MS6193_RS24310 () | 80276..81289 | + | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| MS6193_RS24315 () | 81492..81842 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| MS6193_RS24320 () | 81968..82528 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| MS6193_RS24325 () | 82531..85497 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| MS6193_RS24330 () | 85564..85941 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| MS6193_RS24335 () | 86067..86764 | - | 698 | Protein_111 | IS1 family transposase IS1R | Transposase |
| MS6193_RS24340 () | 87227..87385 | + | 159 | WP_000449408.1 | DsbA family protein | - |
| MS6193_RS24345 () | 87375..87881 | + | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| MS6193_RS24350 () | 88064..88879 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| MS6193_RS24355 () | 89226..91112 | + | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| MS6193_RS24360 () | 91153..91680 | + | 528 | WP_000178050.1 | iron transporter | - |
| MS6193_RS24365 () | 91784..93163 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| MS6193_RS24370 () | 93166..94449 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| MS6193_RS24375 () | 94439..95569 | + | 1131 | WP_000729220.1 | ABC transporter permease | - |
| MS6193_RS24380 () | 95574..96269 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| MS6193_RS24385 () | 96256..96741 | + | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| MS6193_RS24390 () | 96766..97251 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| MS6193_RS24395 () | 97373..97903 | + | 531 | Protein_123 | histidine-type phosphatase | - |
| MS6193_RS24400 () | 97961..98665 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| MS6193_RS24405 () | 98690..99886 | + | 1197 | Protein_125 | IS3 family transposase | - |
| MS6193_RS24410 () | 99908..100141 | + | 234 | Protein_126 | Tn3 family transposase ISPsy39 | Transposase |
| MS6193_RS24415 () | 100218..100526 | + | 309 | Protein_127 | IS4 family transposase ISEc13 | Transposase |
| MS6193_RS24420 () | 100585..101895 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| MS6193_RS24425 () | 101888..102961 | - | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| MS6193_RS24430 () | 102967..103791 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
| MS6193_RS24435 () | 103802..104689 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| MS6193_RS24440 () | 104679..105557 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| MS6193_RS24445 () | 105688..106128 | - | 441 | Protein_133 | zinc-binding dehydrogenase | - |
| MS6193_RS24450 () | 106102..106296 | + | 195 | WP_000796505.1 | hypothetical protein | - |
| MS6193_RS24455 () | 106529..107419 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| MS6193_RS24460 () | 107444..107824 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| MS6193_RS24465 () | 107857..108822 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| MS6193_RS24470 () | 108868..109620 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| MS6193_RS24475 () | 110225..110509 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| MS6193_RS24480 () | 110509..110784 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| MS6193_RS24485 () | 110890..111183 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| MS6193_RS24490 () | 111218..111346 | - | 129 | Protein_142 | IS481 family transposase | - |
| MS6193_RS24495 () | 111379..112548 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| MS6193_RS24500 () | 113041..113348 | + | 308 | Protein_144 | type II toxin-antitoxin system ParD family antitoxin | - |
| MS6193_RS24505 () | 113691..113873 | + | 183 | WP_042065278.1 | hypothetical protein | - |
| MS6193_RS24510 () | 113994..114734 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| MS6193_RS24515 () | 115019..115996 | - | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| MS6193_RS24520 () | 116782..117592 | + | 811 | Protein_148 | hypothetical protein | - |
| MS6193_RS24525 () | 117999..118696 | + | 698 | Protein_149 | IS1 family transposase IS1R | Transposase |
| MS6193_RS24530 () | 118712..119041 | + | 330 | Protein_150 | TOBE domain-containing protein | - |
| MS6193_RS24535 () | 119150..120082 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| MS6193_RS24540 () | 120069..121472 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| MS6193_RS24545 () | 121680..122696 | + | 1017 | WP_012372828.1 | IS5 family transposase IS5D | Transposase |
| MS6193_RS24550 () | 122924..123241 | + | 318 | WP_001513659.1 | hypothetical protein | - |
| MS6193_RS24555 () | 123191..123604 | - | 414 | Protein_155 | IS3 family transposase ISLad1 | Transposase |
| MS6193_RS24560 () | 123528..123887 | - | 360 | WP_001513660.1 | hypothetical protein | - |
| MS6193_RS24565 () | 123915..124094 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| MS6193_RS24570 () | 124099..124479 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| MS6193_RS24575 () | 124479..124700 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| MS6193_RS24580 () | 124883..126439 | + | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| MS6193_RS24585 () | 126436..127719 | + | 1284 | WP_001553855.1 | restriction endonuclease subunit S | - |
| MS6193_RS24590 () | 127841..130957 | + | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| MS6193_RS24595 () | 131171..131868 | + | 698 | Protein_163 | IS1 family transposase IS1G | Transposase |
| MS6193_RS24600 () | 132005..132937 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| MS6193_RS24605 () | 132941..133936 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| MS6193_RS24610 () | 134401..136539 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| MS6193_RS24615 () | 136701..137117 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| MS6193_RS24620 () | 137114..137344 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| MS6193_RS24625 () | 137651..140770 | + | 3120 | WP_001553851.1 | hypothetical protein | - |
| MS6193_RS24630 () | 141033..142166 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| MS6193_RS24635 () | 142186..142470 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| MS6193_RS24640 () | 142467..142664 | - | 198 | WP_000215657.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|