MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 101233 bp
Accession: NZ_CP047248 Location: 921107..1022339 Organism: Streptococcus suis strain LSM178 Replicon: chromosome
Accession: NZ_CP047248 Location: 921107..1022339 Organism: Streptococcus suis strain LSM178 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRI05_RS04515 () | 916854..917864 | + | 1011 | WP_011922483.1 | YdcF family protein | - |
| GRI05_RS04520 () | 917897..918547 | - | 651 | WP_002936498.1 | hemolysin III family protein | - |
| GRI05_RS04525 () | 918537..919088 | - | 552 | WP_011922482.1 | DUF1836 domain-containing protein | - |
| GRI05_RS04530 () | 919196..920854 | - | 1659 | WP_011922481.1 | FAD-dependent oxidoreductase | - |
| GRI05_RS04535 () | 920851..921174 | - | 324 | WP_012775130.1 | rhodanese-like domain-containing protein | - |
| GRI05_RS04540 () | 921281..921541 | + | 261 | WP_009909865.1 | metal-sensitive transcriptional regulator | - |
| GRI05_RS04545 () | 921552..922109 | + | 558 | WP_011922479.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | VF |
| GRI05_RS04550 () | 922168..923010 | + | 843 | WP_012775129.1 | DNA-processing protein DprA | - |
| GRI05_RS04555 () | 923103..925196 | + | 2094 | WP_012775128.1 | type I DNA topoisomerase | - |
| GRI05_RS04560 () | 925773..926267 | + | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| GRI05_RS04565 () | 926333..926698 | + | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| GRI05_RS04570 () | 926897..927070 | + | 174 | WP_012775127.1 | hypothetical protein | - |
| GRI05_RS04575 () | 927067..927885 | + | 819 | WP_011922472.1 | replication initiator protein A | - |
| GRI05_RS04580 () | 928034..929389 | + | 1356 | WP_011922470.1 | DNA (cytosine-5-)-methyltransferase | - |
| GRI05_RS04585 () | 929373..929801 | + | 429 | WP_011922469.1 | hypothetical protein | - |
| GRI05_RS04590 () | 929812..930195 | + | 384 | WP_012775126.1 | hypothetical protein | - |
| GRI05_RS04595 () | 930204..930437 | + | 234 | WP_001005708.1 | hypothetical protein | - |
| GRI05_RS04600 () | 930440..931024 | + | 585 | WP_043029013.1 | CPBP family intramembrane metalloprotease | - |
| GRI05_RS04605 () | 931102..931590 | + | 489 | WP_043029014.1 | hypothetical protein | - |
| GRI05_RS04610 () | 931590..933407 | + | 1818 | WP_043029015.1 | type IV secretory system conjugative DNA transfer family protein | - |
| GRI05_RS04615 () | 933425..933667 | + | 243 | WP_001072182.1 | hypothetical protein | - |
| GRI05_RS04620 () | 933686..934540 | + | 855 | WP_011922462.1 | conjugal transfer protein TrbL | - |
| GRI05_RS04625 () | 934602..934955 | + | 354 | WP_192584856.1 | PrgI family protein | - |
| GRI05_RS04630 () | 934912..937263 | + | 2352 | WP_192584857.1 | AAA family ATPase | - |
| GRI05_RS04635 () | 937265..940066 | + | 2802 | WP_011922459.1 | CHAP domain-containing protein | - |
| GRI05_RS04640 () | 940129..940974 | - | 846 | WP_043029016.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| GRI05_RS04645 () | 940971..941561 | - | 591 | WP_011922457.1 | transcriptional regulator | Antitoxin Detail |
| GRI05_RS04650 () | 941733..946628 | + | 4896 | WP_012775121.1 | hypothetical protein | VF |
| GRI05_RS04655 () | 946629..946820 | + | 192 | WP_011922455.1 | calcium-binding protein | - |
| GRI05_RS04660 () | 946804..947355 | + | 552 | WP_012775120.1 | hypothetical protein | - |
| GRI05_RS04665 () | 947405..954229 | + | 6825 | WP_043029017.1 | DEAD/DEAH box helicase family protein | - |
| GRI05_RS04670 () | 954300..954599 | + | 300 | WP_011922452.1 | hypothetical protein | - |
| GRI05_RS04675 () | 954613..954909 | + | 297 | WP_012775118.1 | hypothetical protein | - |
| GRI05_RS04680 () | 955250..955423 | + | 174 | WP_012775117.1 | type A2 lantipeptide | - |
| GRI05_RS04685 () | 955507..956904 | + | 1398 | WP_011922451.1 | DUF4135 domain-containing protein | - |
| GRI05_RS04690 () | 957093..958412 | - | 1320 | WP_002338419.1 | IS1380 family transposase ISSsu5 | Transposase |
| GRI05_RS04695 () | 958640..959167 | - | 528 | WP_002294507.1 | adenine phosphoribosyltransferase | - |
| GRI05_RS04700 () | 959211..960074 | - | 864 | WP_002294505.1 | hypothetical protein | ARG |
| GRI05_RS04705 () | 960107..960841 | - | 735 | WP_000662263.1 | class I SAM-dependent methyltransferase | - |
| GRI05_RS04710 () | 960822..961691 | - | 870 | WP_000233000.1 | nucleotidyltransferase domain-containing protein | Toxin Detail |
| GRI05_RS04715 () | 961706..961930 | - | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| GRI05_RS04720 () | 962073..963635 | - | 1563 | WP_000136908.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| GRI05_RS04725 () | 963637..964053 | - | 417 | WP_000323438.1 | hypothetical protein ; Integrase | Integrase |
| GRI05_RS04730 () | 964054..964350 | - | 297 | WP_002360685.1 | hypothetical protein | - |
| GRI05_RS04735 () | 964878..965534 | + | 657 | Protein_888 | lantibiotic-modifying protein | - |
| GRI05_RS04740 () | 965518..966846 | + | 1329 | Protein_889 | ATP-binding protein | - |
| GRI05_RS04745 () | 966824..967423 | + | 600 | WP_011922444.1 | response regulator transcription factor | - |
| GRI05_RS04750 () | 968824..969462 | + | 639 | WP_011922443.1 | hypothetical protein | - |
| GRI05_RS04755 () | 969501..970577 | + | 1077 | WP_011922442.1 | toprim domain-containing protein | - |
| GRI05_RS04760 () | 970631..970858 | + | 228 | WP_011922441.1 | hypothetical protein | - |
| GRI05_RS04765 () | 970855..971244 | + | 390 | WP_011922440.1 | methyl-accepting chemotaxis protein | - |
| GRI05_RS04770 () | 971294..971584 | + | 291 | WP_024379089.1 | hypothetical protein | - |
| GRI05_RS04775 () | 971654..972130 | + | 477 | WP_012775115.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| GRI05_RS04780 () | 972130..972906 | + | 777 | WP_011922437.1 | zeta toxin family protein | Toxin Detail |
| GRI05_RS04785 () | 972903..974990 | + | 2088 | WP_011922436.1 | AAA family ATPase | - |
| GRI05_RS04790 () | 974977..976794 | + | 1818 | WP_012775114.1 | ATP-dependent helicase | - |
| GRI05_RS04795 () | 976889..977206 | - | 318 | Protein_900 | ATP-binding protein | - |
| GRI05_RS04800 () | 977550..977864 | + | 315 | WP_000420682.1 | YdcP family protein | - |
| GRI05_RS04805 () | 977880..978266 | + | 387 | WP_000985015.1 | YdcP family protein | - |
| GRI05_RS04810 () | 978295..979680 | + | 1386 | WP_000813488.1 | DNA translocase FtsK | - |
| GRI05_RS04815 () | 979683..979835 | + | 153 | WP_000879507.1 | hypothetical protein | - |
| GRI05_RS04820 () | 979858..981276 | + | 1419 | WP_174854707.1 | replication initiation factor domain-containing protein | - |
| GRI05_RS04825 () | 981325..981408 | + | 84 | WP_013641314.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| GRI05_RS04830 () | 981533..982270 | + | 738 | WP_192584858.1 | Ribosomal RNA small subunit methyltransferase A | ARG |
| GRI05_RS04835 () | 982527..983774 | - | 1248 | WP_000019067.1 | ISL3 family transposase IS1165 | Transposase |
| GRI05_RS04840 () | 983954..984175 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| GRI05_RS04845 () | 984292..984789 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| GRI05_RS04850 () | 984764..985270 | + | 507 | WP_192584859.1 | conjugal transfer protein | - |
| GRI05_RS04855 () | 985254..987701 | + | 2448 | WP_000331160.1 | ATP-binding protein | - |
| GRI05_RS04860 () | 987704..989881 | + | 2178 | WP_000804748.1 | membrane protein | - |
| GRI05_RS04865 () | 989878..990879 | + | 1002 | WP_000769868.1 | hypothetical protein | VF |
| GRI05_RS04870 () | 990876..991808 | + | 933 | WP_001224318.1 | conjugal transfer protein | - |
| GRI05_RS04875 () | 992053..992169 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| GRI05_RS04880 () | 992185..994104 | + | 1920 | WP_192584860.1 | Peptide chain release factor 3 | VF |
| GRI05_RS04885 () | 994223..994390 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| GRI05_RS04890 () | 994450..994803 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| GRI05_RS04895 () | 995308..995730 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| GRI05_RS04900 () | 995727..995957 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| GRI05_RS04905 () | 996418..996621 | + | 204 | WP_000814511.1 | excisionase | - |
| GRI05_RS04910 () | 996703..997920 | + | 1218 | WP_192584861.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GRI05_RS04915 () | 998042..998938 | - | 897 | WP_011922433.1 | ATP-binding protein | - |
| GRI05_RS04920 () | 999303..999668 | + | 366 | WP_012775113.1 | hypothetical protein | - |
| GRI05_RS04925 () | 999668..1000033 | + | 366 | WP_011922431.1 | MobC family plasmid mobilization relaxosome protein | - |
| GRI05_RS04930 () | 1000020..1001885 | + | 1866 | WP_192584862.1 | relaxase/mobilization nuclease domain-containing protein | - |
| GRI05_RS04935 () | 1002207..1002329 | + | 123 | WP_017370910.1 | hypothetical protein | - |
| GRI05_RS04940 () | 1002409..1004010 | + | 1602 | Protein_929 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GRI05_RS04945 () | 1004023..1004739 | + | 717 | WP_011922427.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GRI05_RS04950 () | 1004729..1005520 | + | 792 | WP_043029019.1 | ABC transporter permease | - |
| GRI05_RS04955 () | 1005517..1006224 | + | 708 | WP_012775617.1 | ABC transporter permease | - |
| GRI05_RS04960 () | 1006255..1006938 | + | 684 | WP_012775618.1 | Sensor histidine kinase RcsC | VF |
| GRI05_RS04965 () | 1006923..1008020 | + | 1098 | WP_012775619.1 | HAMP domain-containing histidine kinase | - |
| GRI05_RS04970 () | 1008350..1008571 | + | 222 | WP_011922422.1 | helix-turn-helix transcriptional regulator | - |
| GRI05_RS04975 () | 1008850..1009077 | + | 228 | WP_012775620.1 | DUF3173 family protein | - |
| GRI05_RS04980 () | 1009100..1010299 | + | 1200 | WP_012775621.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GRI05_RS04985 () | 1010484..1011233 | + | 750 | WP_011922420.1 | HAD family hydrolase | - |
| GRI05_RS04990 () | 1011429..1012763 | + | 1335 | WP_043029020.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| GRI05_RS04995 () | 1012840..1013676 | + | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| GRI05_RS05000 () | 1013741..1014745 | + | 1005 | WP_012775107.1 | winged helix DNA-binding domain-containing protein | - |
| GRI05_RS05005 () | 1014859..1015686 | + | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| GRI05_RS05010 () | 1015717..1016463 | + | 747 | WP_011922415.1 | esterase family protein | - |
| GRI05_RS05015 () | 1016481..1017647 | + | 1167 | WP_011922414.1 | carbamoyl phosphate synthase large subunit | - |
| GRI05_RS05020 () | 1017787..1017927 | + | 141 | WP_012775106.1 | hypothetical protein | - |
| GRI05_RS05025 () | 1017940..1018317 | + | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| GRI05_RS05030 () | 1018338..1019240 | + | 903 | WP_011922412.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GRI05_RS05035 () | 1019242..1019988 | + | 747 | WP_011922411.1 | ABC transporter permease | - |
| GRI05_RS05040 () | 1019990..1020724 | + | 735 | WP_011922410.1 | ABC transporter permease | - |
| GRI05_RS05045 () | 1020860..1021612 | + | 753 | WP_011922409.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GRI05_RS05050 () | 1021613..1023583 | + | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
| GRI05_RS05055 () | 1023675..1023926 | + | 252 | WP_012775104.1 | hypothetical protein | - |
| GRI05_RS05060 () | 1023910..1024167 | + | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GRI05_RS05065 () | 1024206..1024871 | + | 666 | WP_012775103.1 | response regulator transcription factor | - |
| GRI05_RS05070 () | 1024868..1025809 | + | 942 | WP_012775102.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|