MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 100386 bp
Accession: NZ_CP043823 Location: 1..100386 Organism: Escherichia coli strain RM10740 Replicon: plasmid p2RM10740
Accession: NZ_CP043823 Location: 1..100386 Organism: Escherichia coli strain RM10740 Replicon: plasmid p2RM10740
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1748_RS25330 (56) | 56..753 | + | 698 | WP_103215986.1 | IS1 family transposase IS1G | Transposase |
| F1748_RS25335 (1395) | 1395..2183 | - | 789 | WP_157901679.1 | Right origin-binding protein | VF |
| F1748_RS25340 (2466) | 2466..2864 | - | 399 | WP_157901678.1 | EAL domain-containing protein | - |
| F1748_RS25345 (2897) | 2897..3112 | - | 216 | WP_089545494.1 | hypothetical protein | - |
| F1748_RS25350 (3262) | 3262..4104 | - | 843 | WP_089516308.1 | helix-turn-helix domain-containing protein | - |
| F1748_RS25360 (6077) | 6077..7188 | - | 1112 | Protein_6 | IS3 family transposase | - |
| F1748_RS25365 (7353) | 7353..8246 | - | 894 | Protein_7 | IS3 family transposase ISEhe3 | Transposase |
| F1748_RS25370 (8314) | 8314..9465 | + | 1152 | WP_089516302.1 | IS30 family transposase IS30D | Transposase |
| F1748_RS25375 (9478) | 9478..9723 | - | 246 | Protein_9 | IS3 family transposase ISEhe3 | Transposase |
| F1748_RS25380 (9937) | 9937..11144 | + | 1208 | WP_238005211.1 | IS3 family transposase ISEc48 | Transposase |
| F1748_RS25385 (11318) | 11318..12496 | + | 1179 | WP_238005206.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| F1748_RS25390 (12493) | 12493..16755 | + | 4263 | WP_238005207.1 | AIDA-I autotransporter | VF |
| F1748_RS25395 (16760) | 16760..16900 | + | 141 | WP_238005204.1 | IS66 family transposase IS679 | Transposase |
| F1748_RS25400 (17169) | 17169..17567 | + | 399 | Protein_14 | IS256 family transposase IS1414 | Transposase |
| F1748_RS25405 (17623) | 17623..18300 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| F1748_RS25410 (18300) | 18300..18647 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| F1748_RS25415 (18667) | 18667..20238 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| F1748_RS25420 (20269) | 20269..20721 | + | 453 | Protein_18 | IS256 family transposase IS1414 | Transposase |
| F1748_RS25425 (20754) | 20754..22346 | - | 1593 | WP_238005208.1 | IS66 family transposase ISEc47 | Transposase |
| F1748_RS25430 (22377) | 22377..22727 | - | 351 | WP_089516339.1 | IS66 family transposase ISEc47 | Transposase |
| F1748_RS25435 (22724) | 22724..23149 | - | 426 | WP_000422702.1 | IS66 family transposase ISEc23 | Transposase |
| F1748_RS25440 (23345) | 23345..24321 | - | 977 | Protein_22 | IS91 family transposase ISEc37 | Transposase |
| F1748_RS25445 (24245) | 24245..24409 | - | 165 | WP_170938728.1 | hypothetical protein | - |
| F1748_RS25450 (24824) | 24824..25123 | + | 300 | WP_140431925.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| F1748_RS25455 (25768) | 25768..26283 | + | 516 | WP_122986601.1 | hypothetical protein | VF |
| F1748_RS25460 (26377) | 26377..28791 | + | 2415 | WP_089516239.1 | putative outer membrane usher protein ElfC | VF |
| F1748_RS25465 (28784) | 28784..29476 | + | 693 | WP_001037287.1 | Chaperone protein FaeE | VF |
| F1748_RS25470 (29439) | 29439..29978 | + | 540 | WP_089516236.1 | F18 fimbrial subunit FedE | - |
| F1748_RS25475 (30276) | 30276..31178 | + | 903 | WP_089516233.1 | F18 fimbrial adhesin subunit FedF | - |
| F1748_RS25480 (31359) | 31359..31726 | + | 368 | Protein_30 | IS3 family transposase | - |
| F1748_RS25485 (32153) | 32153..32578 | + | 426 | WP_000422702.1 | IS66 family transposase ISEc23 | Transposase |
| F1748_RS25490 (32575) | 32575..32925 | + | 351 | WP_089516339.1 | IS66 family transposase ISEc47 | Transposase |
| F1748_RS25495 (32956) | 32956..34530 | + | 1575 | WP_238005209.1 | IS66 family transposase ISEc47 | Transposase |
| F1748_RS25505 (36145) | 36145..36765 | - | 621 | WP_236505412.1 | hypothetical protein | - |
| F1748_RS25510 (36878) | 36878..37909 | + | 1032 | WP_089516295.1 | IS630 family transposase ISEc33 | Transposase |
| F1748_RS26590 (37810) | 37810..38157 | - | 348 | WP_265345030.1 | DUF262 domain-containing protein | - |
| F1748_RS25520 (38442) | 38442..38843 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| F1748_RS25525 (38776) | 38776..39033 | - | 258 | WP_023981775.1 | type II toxin-antitoxin system antitoxin PemI | - |
| F1748_RS25530 (39126) | 39126..39779 | - | 654 | WP_089516292.1 | type II CAAX endopeptidase family protein | - |
| F1748_RS25535 (40720) | 40720..41577 | - | 858 | WP_122986602.1 | incFII family plasmid replication initiator RepA | - |
| F1748_RS25540 (41570) | 41570..41644 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| F1748_RS25545 (41693) | 41693..41818 | + | 126 | WP_001436741.1 | hypothetical protein | - |
| F1748_RS25550 (41891) | 41891..42139 | - | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| F1748_RS25555 (42423) | 42423..42572 | - | 150 | WP_001367749.1 | Hok/Gef family protein | Toxin Detail |
| - (42616) | 42616..42677 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42616) | 42616..42677 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42616) | 42616..42677 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42616) | 42616..42677 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| F1748_RS25560 (42936) | 42936..43235 | - | 300 | WP_050593763.1 | hypothetical protein | - |
| F1748_RS25565 (43353) | 43353..43800 | - | 448 | Protein_47 | thermonuclease family protein | - |
| F1748_RS25570 (44543) | 44543..44746 | - | 204 | WP_001327131.1 | hypothetical protein | - |
| F1748_RS25575 (44901) | 44901..45458 | - | 558 | WP_089516209.1 | fertility inhibition protein FinO | - |
| F1748_RS25580 (45561) | 45561..46421 | - | 861 | WP_089516206.1 | putative protein YcjY | VF |
| F1748_RS25585 (46480) | 46480..47226 | - | 747 | WP_032285008.1 | conjugal transfer pilus acetylase TraX | - |
| F1748_RS25590 (47246) | 47246..51940 | - | 4695 | WP_238005210.1 | Multifunctional conjugation protein TraI | Relaxase |
| F1748_RS25595 (52022) | 52022..52249 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | - |
| F1748_RS25600 (52249) | 52249..52647 | + | 399 | WP_000911317.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| F1748_RS25605 (52656) | 52656..54809 | - | 2154 | Protein_55 | type IV conjugative transfer system coupling protein TraD | - |
| F1748_RS25610 (55061) | 55061..55792 | - | 732 | WP_123001007.1 | conjugal transfer complement resistance protein TraT | - |
| F1748_RS25615 (55824) | 55824..56321 | - | 498 | WP_000605859.1 | entry exclusion protein | - |
| F1748_RS25620 (56337) | 56337..59159 | - | 2823 | WP_096999071.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| F1748_RS25625 (59156) | 59156..60529 | - | 1374 | WP_000944319.1 | conjugal transfer pilus assembly protein TraH | - |
| F1748_RS25630 (60516) | 60516..60908 | - | 393 | WP_001208952.1 | F-type conjugal transfer protein TrbF | - |
| F1748_RS25635 (60895) | 60895..61236 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| F1748_RS25640 (61166) | 61166..61600 | - | 435 | Protein_62 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| F1748_RS25645 (61793) | 61793..61972 | + | 180 | WP_000618107.1 | hypothetical protein | - |
| F1748_RS25650 (62056) | 62056..62448 | - | 393 | WP_000272016.1 | plasmid partitioning/stability family protein | - |
| F1748_RS25655 (62452) | 62452..63426 | - | 975 | WP_089565229.1 | plasmid segregation protein ParM | - |
| F1748_RS25660 (63665) | 63665..64039 | - | 375 | WP_000752649.1 | hypothetical protein | - |
| F1748_RS25665 (64039) | 64039..64671 | - | 633 | WP_000312330.1 | ParA family protein | - |
| F1748_RS25670 (65519) | 65519..66274 | - | 756 | WP_000807692.1 | replication initiation protein RepE | - |
| F1748_RS25675 (66799) | 66799..67605 | - | 807 | WP_089516183.1 | site-specific integrase | - |
| F1748_RS25680 (67606) | 67606..67911 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| F1748_RS25685 (67913) | 67913..68131 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| F1748_RS25690 (68844) | 68844..71465 | + | 2622 | WP_023063774.1 | ABC transporter | - |
| F1748_RS25695 (71664) | 71664..71894 | + | 231 | WP_001261274.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| F1748_RS25700 (71891) | 71891..72207 | + | 317 | Protein_74 | type II toxin-antitoxin system VapC family toxin | - |
| F1748_RS25705 (72267) | 72267..72481 | - | 215 | Protein_75 | transposase | - |
| F1748_RS25710 (72482) | 72482..73012 | - | 531 | WP_000348884.1 | GNAT family N-acetyltransferase | Toxin Detail |
| F1748_RS25715 (73016) | 73016..73285 | - | 270 | WP_001275013.1 | DUF1778 domain-containing protein | - |
| F1748_RS25720 (74185) | 74185..75162 | + | 978 | WP_089516180.1 | RepB family plasmid replication initiator protein | - |
| F1748_RS25725 (75447) | 75447..76187 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| F1748_RS25730 (76308) | 76308..76496 | - | 189 | WP_238005213.1 | serine/threonine protein kinase | - |
| F1748_RS25740 (77538) | 77538..78044 | - | 507 | WP_024185287.1 | thiol peroxidase | - |
| F1748_RS25745 (78702) | 78702..79399 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| F1748_RS25750 (79915) | 79915..80172 | + | 258 | WP_089516329.1 | hypothetical protein | - |
| F1748_RS25755 (80753) | 80753..80989 | - | 237 | WP_236505582.1 | helix-turn-helix transcriptional regulator | - |
| F1748_RS25760 (81040) | 81040..81471 | - | 432 | WP_236505580.1 | hypothetical protein | - |
| F1748_RS25765 (81815) | 81815..82454 | - | 640 | Protein_87 | DDE-type integrase/transposase/recombinase | - |
| F1748_RS25775 (84278) | 84278..84718 | + | 441 | WP_089516256.1 | hypothetical protein | - |
| F1748_RS25780 (84766) | 84766..85473 | + | 708 | WP_236505522.1 | Chaperone protein caf1M | VF |
| F1748_RS25785 (85475) | 85475..87904 | + | 2430 | WP_236505520.1 | Outer membrane usher protein SfmD | VF |
| F1748_RS25790 (88159) | 88159..89013 | - | 855 | WP_089545489.1 | helix-turn-helix domain-containing protein | - |
| F1748_RS25795 (89300) | 89300..89806 | - | 507 | WP_157901675.1 | thiol peroxidase | - |
| F1748_RS25800 (90384) | 90384..90605 | - | 222 | Protein_94 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| F1748_RS25805 (90715) | 90715..91235 | + | 521 | Protein_95 | IS1 family transposase | - |
| F1748_RS25810 (91270) | 91270..92483 | + | 1214 | WP_089516246.1 | IS3 family transposase ISEc31 | Transposase |
| F1748_RS25815 (92494) | 92494..92937 | - | 444 | Protein_97 | IS256 family transposase IS1414 | Transposase |
| F1748_RS25820 (93206) | 93206..93346 | - | 141 | WP_238005204.1 | IS66 family transposase IS679 | Transposase |
| F1748_RS25825 (93351) | 93351..97949 | - | 4599 | WP_238005205.1 | AIDA-I autotransporter | VF |
| F1748_RS25830 (97946) | 97946..99124 | - | 1179 | WP_089565254.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| F1748_RS25835 (99260) | 99260..99957 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|