MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP043199 Location: 2443910..2465584 Organism: Escherichia coli O16:H48 strain PG20180060 Replicon: chromosome
Accession: NZ_CP043199 Location: 2443910..2465584 Organism: Escherichia coli O16:H48 strain PG20180060 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA11_RS23470 () | 2439899..2439946 | + | 48 | WP_211180494.1 | protein YnaN | - |
| FYA11_RS11885 () | 2439960..2440943 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| FYA11_RS11890 () | 2441421..2442794 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| FYA11_RS11895 () | 2442923..2443858 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| FYA11_RS11900 () | 2443910..2445145 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| FYA11_RS11905 () | 2445147..2445362 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| FYA11_RS11910 () | 2445441..2445650 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2445466..2445644 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2445466..2445644 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2445466..2445644 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2445466..2445644 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| FYA11_RS11915 () | 2445643..2445837 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| FYA11_RS11920 () | 2445894..2446703 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| FYA11_RS11925 () | 2446696..2449296 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| FYA11_RS11930 () | 2449398..2449673 | - | 276 | WP_000632297.1 | protein RacC | - |
| FYA11_RS11935 () | 2449748..2449918 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| FYA11_RS11940 () | 2449918..2450139 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| FYA11_RS11945 () | 2450581..2451069 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| FYA11_RS11950 () | 2451066..2451221 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| FYA11_RS11960 () | 2451675..2452151 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| FYA11_RS11965 () | 2452275..2452571 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| FYA11_RS11970 () | 2452594..2453016 | + | 423 | WP_000693797.1 | phage protein | - |
| FYA11_RS11975 () | 2453029..2453886 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| FYA11_RS11980 () | 2453893..2454639 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| FYA11_RS11985 () | 2454662..2455114 | + | 453 | Protein_2316 | DUF1627 domain-containing protein | - |
| FYA11_RS11990 () | 2455310..2455495 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| FYA11_RS11995 () | 2455692..2457149 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| FYA11_RS12000 () | 2457287..2457550 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| FYA11_RS12005 () | 2457531..2457890 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| FYA11_RS12015 () | 2458364..2459296 | + | 933 | Protein_2321 | phage tail length tape measure family protein | - |
| FYA11_RS12020 () | 2459299..2459514 | + | 216 | Protein_2322 | Ail/Lom family outer membrane beta-barrel protein | - |
| FYA11_RS12025 () | 2459656..2460636 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| FYA11_RS12030 () | 2460706..2460894 | + | 189 | Protein_2324 | Ail/Lom family outer membrane beta-barrel protein | - |
| FYA11_RS12035 () | 2460959..2464321 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| FYA11_RS12040 () | 2464321..2464896 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FYA11_RS12045 () | 2464994..2465584 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA11_RS12050 () | 2465901..2466134 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| FYA11_RS12055 () | 2466203..2466316 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA11_RS12060 () | 2467095..2467529 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| FYA11_RS12065 () | 2467670..2468803 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |